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Functional analysis of Escherichia coli RNase G and its application for construction of protein expression system

Research Project

Project/Area Number 15380059
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionTokyo Institute of Technology

Principal Investigator

WACHI Masaaki  Tokyo Institute of Technology, Department of Bioscience and Biotechnology, Associate Professor, 大学院・生命理工学研究科, 助教授 (90192822)

Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥14,500,000 (Direct Cost: ¥14,500,000)
Fiscal Year 2005: ¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 2004: ¥3,900,000 (Direct Cost: ¥3,900,000)
Fiscal Year 2003: ¥7,500,000 (Direct Cost: ¥7,500,000)
KeywordsRNase G / RNase E / Hfq / FtsZ / stress protection / RNA metabolism / adhE / アルコールデヒドロゲナーゼ / バリン / ピルビン酸 / 糖代謝 / Gad / 酸耐性 / エノラーゼ / cra / Dps / 酸化ストレス
Research Abstract

In order to elucidate the regulatory mechanism of mRNA stability by the Escherichia coli endoribonuclease RNase G, action of RNase G on adhE mRNA was investigated. As a result, it was revealed that adhE mRNA cleaved by RNase G at -17 was rapidly degraded while one cleaved by RNase III at -31 was translated. It was found that RNase G mutant strains overproduced pyruvate because of increased stability of mRNAs encoding glycolysis enzymes. According to this finding, a new method for fermentative production of pyruvate and valine was established. It was found that processing of the ftsZ mRNA encoding the essential cell division protein FtsZ was an essential reaction of RNase E required for cell viability. In the RNase E mutant cells, translation of the unprocessed ftsZ mRNA was inhibited by the RNA-binding protein Hfq. For these results, it is suggested that mRNA stability control by endoribonucleases is widely involved in the regulatory mechanism of gene expression in E.coli.

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (27 results)

All 2006 2005 2004 2003 Other

All Journal Article (23 results) Patent(Industrial Property Rights) (1 results) Publications (3 results)

  • [Journal Article] Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli2006

    • Author(s)
      Kruse, T.
    • Journal Title

      Genes & Dev. 20

      Pages: 113-124

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Actin homology MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.2006

    • Author(s)
      Kruse, T., Blagoev, B, Lobner-Olesen, A., Wachi, M., Sasaki, K., Iwai, N., Mann, M., Gerdes, K.
    • Journal Title

      Genes & Dev. 20

      Pages: 113-124

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Anucleate cell blue assay : a useful tool for identifying novel type II topoisomerase inhibitors2006

    • Author(s)
      Oyamada, Y.
    • Journal Title

      Antimicrob.Agents Chemother. 50・1

      Pages: 348-350

    • Related Report
      2005 Annual Research Report
  • [Journal Article] MreB actin^mediated segregation of a specific region of a bacterial chromosome.2005

    • Author(s)
      Gitai, Z.
    • Journal Title

      Cell 120

      Pages: 329-341

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells.2005

    • Author(s)
      Takada, A.
    • Journal Title

      Genes Cells 10

      Pages: 733-741

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] MreB actin-mediated segregation of a specific region of a bacterial chromosome.2005

    • Author(s)
      Gitai, Z., Dye, N.A., Reisenauer, A., Wachi, M., Shapiro, L.
    • Journal Title

      Cell 120

      Pages: 329-341

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells.2005

    • Author(s)
      Takada, A., Nagai, K., Wachi, M.
    • Journal Title

      Genes Cells 10

      Pages: 733-741

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A decreased level of FtsZ is responsible for inviability of RNase E-deficient cells2005

    • Author(s)
      Takada, A.
    • Journal Title

      Genes Cells 10

      Pages: 733-741

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Isolation of a new antibiotic, alaremaycin, structurally related to 5-aminolevulinic acid from Streptomyces sp.A0123042005

    • Author(s)
      Awa, Y.
    • Journal Title

      Biosci.Biotechnol.Biochem. 69・9

      Pages: 1721-1725

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Fluorescent phospholipid analogs as microscopic probes for detection of the mycolic acid-containing layer in Corynebacterium glutamicum : Detecting alterations in the mycolic acid-containing layer following ethambutol treatment2005

    • Author(s)
      Kumagai, Y.
    • Journal Title

      Biosci.Biotechnol.Biochem. 69・10

      Pages: 2051-2056

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor : structural and functional analysis of a newly identified transcription factor from genomic DNA analysis2005

    • Author(s)
      Itou, H.
    • Journal Title

      J.Biol.Chem. 280・46

      Pages: 38711-38719

    • Related Report
      2005 Annual Research Report
  • [Journal Article] MreB actin-mediated segregation of a specific region of a bacterial chromosome2005

    • Author(s)
      Gitai, Z.
    • Journal Title

      Cell 120

      Pages: 329-341

    • Related Report
      2004 Annual Research Report
  • [Journal Article] FtsZ-dependent localization of GroEL protein at possible division sites.2004

    • Author(s)
      Ogino, H.
    • Journal Title

      Genes Cells 9

      Pages: 765-771

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] FtsZ-dependent localization of GroEL protein at possible division sites.2004

    • Author(s)
      Ogino, H., Wachi, M., Ishii, A., Iwai, N., Nishida, T., Yamasa, S., Nagai, K., Sugai, M.
    • Journal Title

      Genes Cells 9

      Pages: 765-771

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] FtsZ-dependent locallzation of GroEL protein at possible division sites2004

    • Author(s)
      Ogino, H.
    • Journal Title

      Genes Cells 9

      Pages: 765-771

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structure-Activity relationship of S-Benzylisothiourea derivatives to induce spherical cells in Escherichia coli2004

    • Author(s)
      Iwai, N
    • Journal Title

      Biosci.Biotechnol.Biochem. 68

      Pages: 2265-2269

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Effects of high hydrostatic pressure on bacterial cytoskeleton FtsZ polymers in vivo and in vitro2004

    • Author(s)
      Ishii, A.
    • Journal Title

      Microbiology 150

      Pages: 1965-1972

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Synthesis and antibacterial activity of a novel series of potent DNA gyrase inhibitor. Pyrazole derivatives2004

    • Author(s)
      Tanitame, A.
    • Journal Title

      J.Med.Chem. 47

      Pages: 3693-3696

    • Related Report
      2004 Annual Research Report
  • [Journal Article] SulA-independent filamentation of Escherichia coli during growth after release from high hydrostatic pressure treatment2004

    • Author(s)
      Kawarai, T.
    • Journal Title

      Appl.Microbiol.Biotechnol. 64

      Pages: 255-262

    • Related Report
      2004 Annual Research Report
  • [Journal Article] RNase ES of Streptomyces coelicolor A3(2) can complement the rne and rng mutations in Escherichia coli.2003

    • Author(s)
      Inagawa, T.
    • Journal Title

      Biosci. Biotechnol. Biochem. 67・11

      Pages: 1767-1771

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Corynebacterium glutamicum rnhA recG double mutant showing lysozyme-sensitivity, temperature-sensitivity growth, and UV-sensitivity.2003

    • Author(s)
      Hirasawa, T.
    • Journal Title

      Biosci. Biotechnol. Biochem. 67・11

      Pages: 2416-2424

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] RNase ES of Streptomyces coelicolor A3(2) can complement the rne and rng mutations in Escherichia coli.2003

    • Author(s)
      Inagawa, T., Okamoto, S., Wachi, M., Ochi, K.
    • Journal Title

      Biosci.Biotechnol.Biochem. 67

      Pages: 1767-1771

    • NAID

      110002694299

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Corynebacterium glutamicum rnhA recG double mutant showing lysozyme-sensitivity, temperature-sensitivity growth, and UV-sensitivity.2003

    • Author(s)
      Hiwasawa, T., Kumagai, Y., Nagai, K., Wachi, M.
    • Journal Title

      Biosci.Biotechnol.Biochem. 67

      Pages: 2416-2424

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] ピルビン酸の製造方法及びL-バリンの製造方法2004

    • Inventor(s)
      和地 正明
    • Industrial Property Rights Holder
      (財)理工学振興会
    • Industrial Property Number
      2004-154989
    • Filing Date
      2004-05-25
    • Related Report
      2004 Annual Research Report
  • [Publications] Takabumi Inagawa: "RNase ES of Streptomyces coelicolor A3(2) can complement the rne and rng mutations in Escherichia coli"Biosci.Biotechnol.Biochem.. 67. 1767-1771 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takashi Hirasawa: "A Corynebacterium glutamicum rnhA recG double mutant showing lysozymesensitivity, temperature-sensitive growth, and UV-sensitivity"Biosci.Biotechnol.Biochem.. 67. 2416-2424 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Iwao Ohtsu: "Transcriptional analysis of the ostA/imp gene involved in organic solvent sensitivity in Escherichia coli"Biosci.Biotechnol.Biochem.. 68. 458-461 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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