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Molecular basis and its application of formaldehyde-fixing reactions in bacteria and Archaea.

Research Project

Project/Area Number 15380061
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

KATO Nobuo  Kyoto University, Graduate School of Agriculture, Professor, 農学研究科, 教授 (50026556)

Co-Investigator(Kenkyū-buntansha) SAKAI Yasuyoshi  Kyoto University, Graduate School of Agriculture, Associate Professor, 農学研究科, 助教授 (60202082)
YURIMOTO Hiroya  Kyoto University, Graduate School of Agriculture, Assistant Professor, 農学研究科, 助手 (00283648)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥16,200,000 (Direct Cost: ¥16,200,000)
Fiscal Year 2004: ¥3,900,000 (Direct Cost: ¥3,900,000)
Fiscal Year 2003: ¥12,300,000 (Direct Cost: ¥12,300,000)
Keywordsmethylotroph / formaldehyde / Pyrococcus horikoshii / Bacillus subtilis / Mycobacterium gastri / methanogen / Hps / Phi / メタノール / ホルムアルデヒド固定反応 / Mycobacterium gastri MB19
Research Abstract

Hexulose-6-phosphate synthase(Hps) and Phosphohexuloisomerase(Phi), two key enzymes in the ribulose monophosphate pathway, has been recently found in a number of bacterial and archaeal strains. In this study, we studied on (i)the regulation of the expresseion of hps and phi gene in bacteria, and (ii)enzymological properties and their physiological roles of hps and phi in archaea.
(i)Two regulatory proteins (RmpR from a methylotroph Mycobacterium gastri MB19 and HxlR from a non-methylotroph Bacillus subtilis) were produced in E.coli and their abilities to DNA were tested. HxlR bound to the upstream region of the hps/phi operon and was shown to act as a positive regulator of the formaldehyde-inducible gene expression.
(ii)The hyperthermophilic archaeon Pyrococcus horikoshii had a fused protein consisting of Hps and Phi. The entire fusion protein and separate Hps and Phi polypeptides were produced in E.coli, purified and biochemically characterized. The fused protein was found in a particulate fraction. It was suggested that the thermostability of the Phi moiety of the fused protein resulted from fusion with Hps. Fusion of Hps and Phi increased the catalytic efficiency of the net reaction. On the other hand the methanogenic archaeon Methanosarcina mazei Goel had a fused protein consisting of Hps and formaldehyde activating enzyme (Fae). Hps-Fae fused protein produced in E.coli exhibited both Hps and Phi activities. From the catalytic properties of Hps-Phi and Hps-Fae proteins from two archeal strains, it was suggested that these proteins are involved not only in the formaldehyde fixation (forward reaction) but also in the generation of ribose 5-phosphate (reverse reaction).

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (18 results)

All 2005 2004 2003 Other

All Journal Article (14 results) Publications (4 results)

  • [Journal Article] HxlR, a member of the DUF24 protein family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxLAB operon in Bacillus subtilis2005

    • Author(s)
      Yurimoto, H., et al.
    • Journal Title

      Mol.Microbiol. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway2005

    • Author(s)
      Orita, I., et al.
    • Journal Title

      J.Bacteriol. 187(印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] HxlR, a member of the DUF24 protein family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.2005

    • Author(s)
      Yurimoto, H., Hirai, R., Matsuno, M., Yasueda, H., Kato, N., Sakai, Y.
    • Journal Title

      Mol.Microbiol. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.2005

    • Author(s)
      Orita, I., Yurimoto, H., Hirai, R., Kawarabayasi, Y., Sakai, Y., Kato, N.
    • Journal Title

      J.Bacteriol. 187(in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway2005

    • Author(s)
      Orita, I., et al.
    • Journal Title

      J.Bacteriol. (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 微生物の新規な代謝機能の解明とその応用に関する研究2004

    • Author(s)
      加藤暢夫
    • Journal Title

      日本農芸化学会誌 78

      Pages: 548-555

    • NAID

      10013140406

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Novel metabolic functions of microorganisms and their application (in Japanese).2004

    • Author(s)
      Kato, N.
    • Journal Title

      Nippon Nogeikagaku Kaishi 78

      Pages: 548-555

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] 微生物の新規な代謝機能の解明とその応用に関する研究2004

    • Author(s)
      加藤暢夫
    • Journal Title

      日本農芸化学会誌 78・6

      Pages: 548-555

    • NAID

      10013140406

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Molecular characterization of glutathione-dependent formaldehyde dehydrogenase gene FLD1 from methylotrophic yeast Pichia methanolica2004

    • Author(s)
      Nakagawa, T., et al.
    • Journal Title

      Yeast 21・5

      Pages: 445-453

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Three new thermotolerant methylotrophic yeasts, Candida krabiensis sp.nov., Candida sithepensis sp.nov., and Pichia siamensis sp.nov., isolated in Thailand2004

    • Author(s)
      Limtong, S., et al.
    • Journal Title

      J.Gen.Appl.Microbiol. 50・3

      Pages: 119-127

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Formaldehyde fixation contributes to detoxification for growth of a nonmethylotroph, Burkholderia cepacia TM1, on vanillic acid2003

    • Author(s)
      Mitsui, R., et al.
    • Journal Title

      Appl.Environ.Microbiol. 69

      Pages: 6128-6132

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] メチロトローフのホルムアルデヒド対策2003

    • Author(s)
      由里本博也ら
    • Journal Title

      化学と生物 41

      Pages: 218-221

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Formaldehyde fixation contributes to detoxification for growth of a nonmethylotroph, Burkholderia cepacia TM1, on vanillic acid.2003

    • Author(s)
      Mitsui, R., Kusano, Y., Yurimoto, H., Sakai, Y., Kato, N., Tanaka, M.
    • Journal Title

      Appl.Environ.Microbiol. 69

      Pages: 6128-6132

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] How to cope with formaldehyde in methylotrophs (in Japanese).2003

    • Author(s)
      Yurimoto, H., Sakai, Y., Kato, N.
    • Journal Title

      Kagakutoseibutsu 41

      Pages: 218-221

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Yurimoto, H: "Alcohol dehydrogenases that catalyze methyl formate synthesis participate in formaldehyde detoxification in the methylotrophic yeast Candia boidinii"Yeast. 21(印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Komeda, T: "Cis-acting elements sufficient for induction of FDH1 expression by formate in the methylotrophic yeast Candida boidinii"Mol.Gen.Genomics. 270. 272-280 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Mitsui, R: "Formaldehyde fixation contributes to detoxification for growth of a nonmethylotrophic Burkholderia cepacia TM1"Appl.Environ.Microbiol.. 69. 6128-6132 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 由里本博也: "メチロトローフのホルムアルデヒド対策"化学と生物. 41. 218-222 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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