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Design of Novel DNAs for Gene Therapy with Nonviral Vectors

Research Project

Project/Area Number 15390034
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionHOKKAIDO UNIVERSITY

Principal Investigator

KAMIYA Hiroyuki  Hokkaido Univ., Grad.Sch.Pharm.Sci., Associate Professor, 大学院・薬学研究科, 助教授 (10204629)

Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥9,400,000 (Direct Cost: ¥9,400,000)
Fiscal Year 2005: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2004: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2003: ¥4,000,000 (Direct Cost: ¥4,000,000)
Keywordsexogenous DNA / transgene expression / gene correction / controlled intranuclear disposition / 核内動態 / DNAダンベル / ループ配列
Research Abstract

Naked luciferase-plasmid DNA was delivered into mouse liver by a hydrodynamics-based injection, and the amounts of intranuclear plasmid DNA, luciferase, and its mRNA were quantitated at various time points. Methylation of the promoter of the luciferase gene was also analyzed. Expression efficiency from one copy of the exogenous DNA dramatically decreased over time, and the DNA was methylated and degraded into fragments. Unexpectedly, methylation of the intact plasmid DNA was low and did not increase over time. Rather, the fragmented DNA was methylated more frequently than the intact plasmid. These results suggest that the CpG methylation and the degradation of exogenous DNA, and its 'silencing', occurred in parallel in the nucleus.
To control intranuclear disposition of plasmid DNA, replicating plasmid DNA was constructed. The replicating plasmid DNA was resistant to rapid decrease in its amount and expressed the luciferase gene more efficiently than the corresponding non-replicating plasmid. Plasmid DNAs containing a sequence that binds to the histone proteins were also constructed. The luciferase gene expression was enhanced when the histone-binding sequence was located in a proper position.
Additionally, single-stranded DNA fragment was prepared to control intranuclear disposition of gene correction devices. This novel DNA fragment corrected a target gene with more than 10-fold more efficiency as compared to the conventional double-stranded DNA fragment (PCR fragment). Further enhancement of the gene correction was achieved when another DNA fragment was designed based on in vitro experiments on a protein involved in homologous recombination. This would be results of improved availability of the gene correction device.
Importance of intranuclear disposition has been indicated in this study. We hope that the novel DNAs described here would be highly useful for gene therapy after further improvement.

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (35 results)

All 2006 2005 2004 2003 Other

All Journal Article (31 results) Patent(Industrial Property Rights) (2 results) Publications (2 results)

  • [Journal Article] Intranuclear disposition of exogenous DNA in vivo : Silencing, Methylation and fragmentation.2006

    • Author(s)
      H.Ochiai他
    • Journal Title

      FEBS Lett. 580(#3)

      Pages: 918-922

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transient expression of Drosophila melanogaster deoxynucleoside kinase gene enhances cytotoxicity of nucleoside analogs.2006

    • Author(s)
      H.Kamiya他
    • Journal Title

      Nucleosides Nucleotides Nucleic Acids 25(印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Intranuclear disposition of exogenous DNA in vivo : Silencing, methylation and fragmentation.2006

    • Author(s)
      H.Ochiai et al.
    • Journal Title

      FEBS Lett. 580(#3)

      Pages: 918-922

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Intranuclear disposition of exogenous DNA in vivo : Silencing, methylation and fragmentation.2006

    • Author(s)
      H.Ochiai他
    • Journal Title

      FEBS Lett. 580(#3)

      Pages: 918-922

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Cytokine induction by a bacterial DNA-specific modified base.2005

    • Author(s)
      H.Tsuchiya他
    • Journal Title

      Biochem. Biophys. Res. Commun. 326(#4)

      Pages: 777-781

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Increased SFHR gene correction efficiency with sense single-stranded DNA.2005

    • Author(s)
      H.Tsuchiya他
    • Journal Title

      J. Gene Med. 7(#4)

      Pages: 486-493

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Kinetic analysis of protein production after DNA transfection.2005

    • Author(s)
      Y.Yamada他
    • Journal Title

      Int. J. Pharm. 299(#1-2)

      Pages: 34-40

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Correction of frameshift mutations with single-stranded and double-stranded DNA fragments prepared from phagemid/plasmid DNAs.2005

    • Author(s)
      H.Tsuchiya他
    • Journal Title

      Biol. Pharm. Bull. 28(#10)

      Pages: 1958-1962

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Effect of methylated adenine in plasmid DNA on transgene expression in mice.2005

    • Author(s)
      H.Ochiai他
    • Journal Title

      Biol. Pharm. Bull. 28(#10)

      Pages: 2019-2022

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Factors affecting SFHR gene correction efficiency with single-stranded DNA fragment.2005

    • Author(s)
      H.Tsuchiya他
    • Journal Title

      Biochem. Biophys. Res. Commun. 336(#4)

      Pages: 1194-1200

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Pharmacokinetic and pharmacodynamic considerations in gene therapy.2005

    • Author(s)
      H.Kamiya他
    • Journal Title

      Drug Discovery Today 8(#21)

      Pages: 990-996

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Cytokine induction by a bacterial DNA-specific modified base.2005

    • Author(s)
      H.Tsuchiya et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 326(#4)

      Pages: 777-781

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Increased SFHR gene correction efficiency with sense single-stranded DNA.2005

    • Author(s)
      H.Tsuchiya et al.
    • Journal Title

      J.Gene Med. 7(#4)

      Pages: 486-493

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Kinetic analysis of protein production after DNA transfection.2005

    • Author(s)
      Y.Yamada et al.
    • Journal Title

      Int.J.Pharm. 299(#1-2)

      Pages: 34-40

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Correction of frameshift mutations with single-stranded and double-stranded DNA fragments prepared from phagemid/plasmid DNAs.2005

    • Author(s)
      H.Tsuchiya et al.
    • Journal Title

      Biol.Pharm.Bull. 28(#10)

      Pages: 1958-1962

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Effect of methylated adenine in plasmid DNA on transgene expression in mice.2005

    • Author(s)
      H.Ochiai et al.
    • Journal Title

      Biol.Pharm.Bull. 28(#10)

      Pages: 2019-2022

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Factors affecting SFHR gene correction efficiency with single-stranded DNA fragment.2005

    • Author(s)
      H.Tsuchiya et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 336(#4)

      Pages: 1194-1200

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Increased SFHR gene correction efficiency with sense single- stranded DNA.2005

    • Author(s)
      H.Tsuchiya他
    • Journal Title

      J.Gene Med. 7(#4)

      Pages: 486-493

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Kinetic analysis of protein production after DNA transfection.2005

    • Author(s)
      Y.Yamada他
    • Journal Title

      Int.J.Pharm. 299(#1-2)

      Pages: 34-40

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Correction of frameshift mutations with single-stranded and double-stranded DNA fragments prepared from phagemid/plasmid DNAs.2005

    • Author(s)
      H.Tsuchiya他
    • Journal Title

      Biol.Pharm.Bull. 28(#10)

      Pages: 1958-1962

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Effect of methylated adenine in plasmid DNA on transgene expression in mice.2005

    • Author(s)
      H.Ochiai他
    • Journal Title

      Biol.Pharm.Bull. 28(#10)

      Pages: 2019-2022

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Factors affecting SFHR gene correction efficiency with single-stranded DNA fragment.2005

    • Author(s)
      H.Tsuchiya他
    • Journal Title

      Biochem.Biophys.Res.Commun. 336(#4)

      Pages: 1194-1200

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Increased SFHR gene correction efficiency with sense single-stranded DNA.2005

    • Author(s)
      H.Tsuchiya他
    • Journal Title

      J.Gene Med. (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Mechanism of improved gene transfer by the N-terminal stearylation of octaarginine.2004

    • Author(s)
      I.A.Khalil他
    • Journal Title

      Gene Therapy 11(#7)

      Pages: 636-644

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transferrin-modified liposomes equipped with a pH-sensitive fusogenic peptide.2004

    • Author(s)
      T.Kakudo他
    • Journal Title

      Biochemistry 43(#19)

      Pages: 5618-5628

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Mechanism of improved gene transfer by the N-terminal stearylation of octaarginine : Enhanced cellular association by hydrophobic core formation.2004

    • Author(s)
      I.A.Khalil et al.
    • Journal Title

      Gene Therapy 11(#7)

      Pages: 636-644

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transferrin-modified liposomes equipped with a pH-sensitive fusogenic peptide : An artificial viral-like delivery system.2004

    • Author(s)
      T.Kakudo et al.
    • Journal Title

      Biochemistry 43(#19)

      Pages: 5618-5628

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] No enhancement of nuclear entry by direct conjugation of a nuclear localization signal peptide to linearized DNA.2003

    • Author(s)
      M.Tanimoto他
    • Journal Title

      Bioconjugate Chem. 14(#6)

      Pages: 1197-1202

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] No enhancement of nuclear entry by direct conjugation of a nuclear localization signal peptide to linearized DNA.2003

    • Author(s)
      M.Tanimoto et al.
    • Journal Title

      Bioconjugate Chem. 14(#6)

      Pages: 1197-1202

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Pharmacokinetic and pharmacodynamic considerations in gene therapy.2003

    • Author(s)
      H.Kamiya et al.
    • Journal Title

      Drug Discovery Today 8(#21)

      Pages: 990-996

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transient expression of Drosophila melanogaster deoxynucleoside kinase gene enhances cytotoxicity of nucleoside analogs.

    • Author(s)
      H.Kamiya et al.
    • Journal Title

      Nucleosides Nucleotides Nucleic Acids (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 核酸構築物及びそれを利用した標的領域への変異導入方法2004

    • Inventor(s)
      紙谷浩之ら
    • Industrial Property Rights Holder
      北海道大学
    • Industrial Property Number
      2004-360632
    • Filing Date
      2004-12-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 核酸構築物及びそれを利用した標的領域への変異導入方法2004

    • Inventor(s)
      紙谷 浩之ら
    • Industrial Property Rights Holder
      北海道大学
    • Industrial Property Number
      2004-360632
    • Filing Date
      2004-12-13
    • Related Report
      2004 Annual Research Report
  • [Publications] M.Tanimoto 他: "No enhancement of nuclear entry by direct conjugation of a nuclear localization signal peptide to linearized DNA"Bioconjugate Chem.. 14(6). 1197-1202 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Kamiya 他: "Pharmacokinetic and pharmacodynamic considerations in gene therapy"Drug Discivery Today. 8(21). 990-996 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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