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Design and development of therapeutic drugs for intractable diseases based on molecular recognition of aspartic proteases

Research Project

Project/Area Number 15390039
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionKyoto Pharmaceutical University

Principal Investigator

KISO Yoshiaki  Kyoto Pharmaceutical University, Faculty of Pharmaceutical Sciences, Professor (40089107)

Co-Investigator(Kenkyū-buntansha) HAYASHI Yoshio  Kyoto Pharmaceutical University, Faculty of Pharmaceutical Sciences, Associate Professor (10322562)
KIMURA Tooru  Kyoto Pharmaceutical University, Faculty of Pharmaceutical Sciences, Assistant Professor (70204980)
YAMAZAKI Toshimasa  Kyoto Pharmaceutical University, Team Leader (40360458)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥11,000,000 (Direct Cost: ¥11,000,000)
Fiscal Year 2005: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2004: ¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2003: ¥4,000,000 (Direct Cost: ¥4,000,000)
Keywordsenzyme inhibitors / aspartic protease / Alzheimer's disease / β-secretase / plasmepsin / adult T-cell leukemia / HTLV-1 protease / セクレターゼ / HIVプロテアーゼ / マラリア / 分子認識 / ドラッグデザイン / 難病治療薬
Research Abstract

Based on the substrate transition state concept, we designed and synthesized inhibitors of HIV protease that belongs to aspartic protease. We found an innovative hydroxymethylcarbonyl (HMC) isostere as an ideal transition state mimic and succeeded molecular size reduction. These small-sized HIV protease inhibitors are expected as the next generation anti-HIV drugs. HIV protease inhibitors gained epoch-making success but there are many problems left to be solved such as necessity of high dose, side effects, drug resistance.
We aimed to develop low-dose anti-HIV drugs with high tissue translocation ability by designing dipeptide-type HIV protease inhibitors containing the ideal transition state mimic, HMC isostere based on the analysis of interaction between the protease and inhibitors. Furthermore, the dipeptide-type small-sized HIV protease inhibitors exhibited effectiveness against drug-resistant virus and different mutation patterns, and thus have a potential to overcome the drug resistance and side effects. Based on the molecular recognition between mutant protease and inhibitors, we designed dipeptide-type HIV protease inhibitors and synthesized their water-soluble prodrugs as well.
We applied this useful methodology for design and synthesis of aspartic protease inhibitors to various important proteases such as plasmepsins that play important role in malaria protozoa proliferation, β-secretase that regulates formation of β-peptide and is probably involved in Alzheimer's disease pathology, and HTLV-1 protease that causes adult T-cell leukemia. These inhibitors are expected to be useful in development of therapeutic drugs for intractable diseases.

Report

(4 results)
  • 2006 Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (28 results)

All 2006 2005 2004 2003 Other

All Journal Article (18 results) (of which Peer Reviewed: 3 results) Presentation (2 results) Book (1 results) Patent(Industrial Property Rights) (1 results) Publications (6 results)

  • [Journal Article] The novel β-secretase inhibitor KMI-429 reduces amyloid β peptide production in amyloid precursor protein transeenic and wild-tune mice2006

    • Author(s)
      Masashi Asai
    • Journal Title

      J.Neurochem. 96

      Pages: 533-540

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Overcoming roadblocks in lead optimization:a thermodynamic perspective2006

    • Author(s)
      Adam J. Ruben
    • Journal Title

      Chem.Biol.Drug Design 67

      Pages: 2-4

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Small-sized BACE1 inhibitors2006

    • Author(s)
      Zyta Ziora
    • Journal Title

      Drugs of the Future 31

      Pages: 53-63

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The novel β-secretase inhibitor KMI-429 reduces amyloid β peptide production in amyloid precursor protein transgenic and wild-type mice2006

    • Author(s)
      Masashi Asai, Chinatsu Hattori, Nobuhisa Iwata, Takaomi C. Saido, Noboru Sasagawa, Beata Szabo, Yasuhiro Hasimoto, Kei Maruyama, Sei-ichi Tamura, Yoshiaki Kiso, Shoichi Ishiura
    • Journal Title

      J. Neurochem 96(2)

      Pages: 533-540

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Overcoming roadblocks in lead optimization: a thermodynamic perspective2006

    • Author(s)
      Adam J. Ruben, Yoshiaki Kiso, Ernesto Freire
    • Journal Title

      Chem. Biol. Drug. Des. 67(1)

      Pages: 2-4

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Small-sized BACE1 inhibitors2006

    • Author(s)
      Zyta Ziora, Tooru Kimura, Yoshiaki Kiso
    • Journal Title

      Drugs of the Future 31(1)

      Pages: 53-63

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The novel β-secretase inhibitor KMI-429 reduces amyloid β peptide production in amyloid precursor protein transgenic and wild-type mice2006

    • Author(s)
      Masashi Asai
    • Journal Title

      Journal of Neurochemistry 96(2)

      Pages: 553-540

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Overcoming roadblocks in lead optimization : a thermodynamic perspective.2006

    • Author(s)
      Adam J.Ruben
    • Journal Title

      Chemical Biology & Drug Design 67(l)

      Pages: 2-4

    • Related Report
      2005 Annual Research Report
  • [Journal Article] X-ray crystal structure of the aspartic protease plasmepsin 4 from the malarial parasite Plasmodium malariae bound to an allophenylnorstatine based inhibitor.2006

    • Author(s)
      Jose Clemente
    • Journal Title

      Acta Crystallographica Sect D 62(3)

      Pages: 246-252

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Small-sized BACE1 inhibitors2006

    • Author(s)
      Zyta Ziora
    • Journal Title

      Drugs of the Future 31(l)

      Pages: 53-63

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Design and synthesis of potent β-secretase (BACE1) inhibitors with P1' carboxylic acid bioisosteres.2006

    • Author(s)
      Tooru Kimura
    • Journal Title

      Bioorganic Medicinal Chemistry Letters 16(9)

      Pages: 2380-2386

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Modification of P4 position in β-secretase (BACE1) inhibitors containing phenylnorstaine.2006

    • Author(s)
      Zyta Ziora
    • Journal Title

      Peptide Science 2005(in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Design and synthesis of highly active Alzheimer's β-secretase (BACE1) inhibitors KMI-420 and KMI-429, with enhanced chemical stability.2005

    • Author(s)
      Tooru Kimura
    • Journal Title

      Bioorganic Medicinal Chemistry Letters 15(1)

      Pages: 211-215

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A structural and thermodynamic escape mechanism from a drug resistant mutation of the HIV-1 protease.2004

    • Author(s)
      Sonia Vega
    • Journal Title

      Proteins : Str.,Funct.& Bioionformatics 55(3)

      Pages: 594-602

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Design and synthesis of a novel water-soluble Aβ 1-42 isopeptide : an efficient strategy for the preparation of Alzheimer's disease-related peptide, Aβ1-42,via O-N intramolecular acyl migration reaction.2004

    • Author(s)
      Youhei Sohma
    • Journal Title

      Tetrahedron Letters 45(31)

      Pages: 5965-5968

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Identification of peptidomimetic HTLV-1 protease inhibitors containing hydroxymethylcarbonyl (HMC) isostere as the transition-state mimic.2004

    • Author(s)
      Hikoichiro Maegawa
    • Journal Title

      Bioorganic Medicinal Chemistry Letters 14(23)

      Pages: 5925-5929

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Search for substrate-based inhibitors fitting the S2' space of malarial aspartic protease plasmepsin II.2004

    • Author(s)
      Aiko Kiso
    • Journal Title

      Journal of Peptide Science 10(11)

      Pages: 641-647

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Design of inhibitors against HIV, HTLV-1,and Plasmodium falciparum aspartic proteases.2004

    • Author(s)
      Hamdy M.Abdel-Rahman
    • Journal Title

      Biological Chemsitry 385(11)

      Pages: 1035-1039

    • Related Report
      2004 Annual Research Report
  • [Presentation] Adaptive space search:Design of peptidomimetic inhibitors and prodrugs of aspartic proteases targeting intractable diseases2005

    • Author(s)
      Y. Kiso
    • Organizer
      2005 International Chemical Congress of Pacific Basin Societies(Pacifichem 2005)
    • Place of Presentation
      Honolulu,U.S.A.
    • Year and Date
      2005-12-18
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] Adaptive space search : Design of peptidomimetic inhibitors and prodrugs of aspartic proteases targeting intractable diseases.2005

    • Author(s)
      Y Kiso
    • Organizer
      2005 International Chemical Congress of Pacific Basin Societies(Pacifichem 2005)
    • Place of Presentation
      Honolulu, U.S.A.
    • Year and Date
      2005-12-18
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] 第19回大学と科学公開シンポジウム講演収録集:アルツハイマー病:治療の可能性を探る2005

    • Author(s)
      木曽 良明
    • Publisher
      クバプロ
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 水溶性プロドラッグ2003

    • Inventor(s)
      木曽 良明
    • Industrial Property Rights Holder
      木曽 良明
    • Filing Date
      2003-07-11
    • Acquisition Date
      2005-02-03
    • Related Report
      2004 Annual Research Report
  • [Publications] Yoshio Hamada: "Effect of the acyl groups on O→N acyl migration in the water-soluble prodrugs of HIV-1 protease inhibitor"Bioorganic Medicinal Chemistry Letters. 13(16). 2727-2730 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Azin Nezami: "High affinity inhibition of a family of Plasmodium falciparum proteases by a designed adaptive inhibitor"Biochemistry. 42(28). 8459-8464 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Youhei Sohma: "Development of water-soluble prodrugs of the HIV-1 protease inhibitor KNI-727 : Importance of the conversion time for higher gastrointestinal absorption of prodrugs based on spontaneous chemical cleavage"Journal of Medicinal Chemistry. 46(19). 4124-4135 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Daisuke Shuto: "KMI-008, a novel β-secretase inhibitor containing a hydroxymethylcarbonyl isostere as a transition-state mimic : design and synthesis of substrate-based octapeptides"Bioorganic Medicinal Chemistry Letters. 13(24). 4273-4276 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yoshio Hamada: "Water-soluble prodrugs of dipeptide HIV protease inhibitors based on O-N intramolelcular acyl migration : design, synthesis and kinetic study"Bioorganic Medicinal Chemistry. 12(1). 159-170 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Tooru Kimura: "KMI-358 and KMI-370, highly potent and small-sized BACE1 inhibitors containing phenylnorstatine"Bioorganic Medicinal Chemistry Letters. 14(6). 1527-1531 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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