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Positional cloning of the pathogenic gene for familial myoclonus epilepsy (BAFME) mapped to the 8q23 region

Research Project

Project/Area Number 15390276
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Neurology
Research InstitutionKeio University

Principal Investigator

ASAKAWA Shuichi  Keio University, School of Medicine, Assistant professor, 医学部, 助手 (30231872)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥9,300,000 (Direct Cost: ¥9,300,000)
Fiscal Year 2004: ¥3,200,000 (Direct Cost: ¥3,200,000)
Fiscal Year 2003: ¥6,100,000 (Direct Cost: ¥6,100,000)
Keywordschromosome 8 / epilepsy / BAFME / CSMD3 / positional cloning / non-coding RNA / 8q23 / single gene disorder / 単一遺伝子病 / ゲノム解析 / 良性家族性てんかん / FAME / ミオクローヌス / 常染色体
Research Abstract

Benign adult familial myoclonus epilepsy (BAFME) was mapped to 8q23.3-q24.1. We have performed DNA sequencing and detailed analysis of the 8q22-qter including the BAFME region. As a result, we found at least 46 protein coding genes including FOG2, OXR1, STARS, ANGPT1, MGC35555, INT6, KIAA0103, FLJ30668, TRHR, CML66, DC6, PKHDK1, EBAG9, FLJ20366, KCNV1, CSMD3, TRPS1, EIF3SC, MGC14595, RAD21, AARD, SLC30A8, THRAP6, EXT1, SAMD12, TNFRSF11B, COLEC10, MAL2, NOV, ENPP2, TAF2, MGC5528, DEPDC6, COL14A1, MRPL13, MTBP, SNTB1, HAS2, ZHX2, DER1, MGC21654, BJ-TSA-9, FLJ14825, ZHX1, ATAD2, and FBXO32. Then we preformed mutation analysis of coding exons, exons of 5'UTR regions, and promoter regions within 300-500bp upstream of the transcription starting points by PCR amplification and direct sequencing. We also performed mutation analysis of 5'non-coding RNA genes (AK025035, AK025288, BC034804, Keio_929, Keio_930). Furthermore, we preformed quantitative PCR analysis against each exon of all the genes within the BAFME region to detect some exonic deletions or insertions. In this way, we completed every items of mutation analysis listed in the initial plan of this study, but we have not yet identified the causative mutations. Therefore, we suspect that the mutations must be located within an intronic region, spacer between genes, or as yet an un-identified gene within the region.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (10 results)

All 2005 2004 2003 Other

All Journal Article (9 results) Publications (1 results)

  • [Journal Article] COH1 analysis and linkage study in two Japanese families with Cohen syndrome.2005

    • Author(s)
      Kondo I, Shimizu A, Asakawa S, Miyamoto K, Yamagata H, Tabara Y, Shimizu N.
    • Journal Title

      Glin.Genet. 67

      Pages: 270-272

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular cloning and characterization of gene for Golgi-localized syntaphilin-related protein on human chromosome 8q23.2005

    • Author(s)
      Funakoshi E, Nakagawa KY, Hamano A, Hori T, Shimizu A, Asakawa S, Shimizu N, Ito F.
    • Journal Title

      Gene. 344

      Pages: 259-271

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] COH1 analysis and linkage study in two Japanese families with Cohen syndrome.2005

    • Author(s)
      Kondo I, Shimizu A, Asakawa S, Miyamoto K, Yamagata H, Tabara Y, Shimizu N.
    • Journal Title

      Clin.Genet. 67

      Pages: 270-272

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] COH1 analysis and linkage study in two Japanese families with Cohen syndrome.2005

    • Author(s)
      Kondo I, Shimizu A, Asakawa S, Miyamoto K, Yamagata H, Tabara Y, Shimizu N.
    • Journal Title

      Clin Genet. 67

      Pages: 270-272

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Finishing the euchromatic sequence of the human genome.2004

    • Author(s)
      International Human Genome Sequencing Consortium.
    • Journal Title

      Nature. 431

      Pages: 931-945

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Finishing the euchromatic sequence of the human genome.2004

    • Author(s)
      International Human Genome Sequencing Consortium
    • Journal Title

      Nature 431

      Pages: 931-945

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Finishing the euchromatic sequence of the human genome.2004

    • Author(s)
      International Human Genome Sequencing Consortium
    • Journal Title

      Nature. 431

      Pages: 931-945

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A novel giant gene CSMD3 encoding a protein with CUB and sushi multiple domains : a candidate gene for benign adult familial myoclonic epilepsy on human chromosome 8q23.3-q24.1.2003

    • Author(s)
      Shimizu A, Asakawa S, Sasaki T, Yamazaki S, Yamagata H, Kudoh J, Minoshima S, Kondo I, Shimizu N.
    • Journal Title

      Biochem Biophys Res Commun. 309

      Pages: 143-154

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A novel giant gene CSMD3 encoding a protein with CUB and sushi multiple domains: a candidate gene for benign adult familial myoclonic epilepsy on human chromosome 8q23.3-q24.1.2003

    • Author(s)
      Shimizu A, Asakawa S, Sasaki T, Yamazaki S, Yamagata H, Kudoh J, Minoshima S, Kondo I, Shimizu N
    • Journal Title

      Biochem Biophys Res Commun. 309

      Pages: 143-154

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Shimizu A, Asakawa S, Sasaki T, Yamazaki S, Yamagata H, Kudoh J, Minoshima S, Kondo I, Shimizu N.: "A novel giant gene CSMD3 encoding a protein with CUB and sushi multiple domains : a candidate gene for benign adult familial myoclonic epilepsy on human chromosome 8q23.3-q24.1."Biochem Biophys Res Commun.. 309. 143-154 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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