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The sanitizing systems for endogenous nucleotide lesions, and their roles on spontaneous mutagenesis

Research Project

Project/Area Number 15510041
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Risk sciences of radiation/Chemicals
Research InstitutionTohoku University

Principal Investigator

NUNOSHIBA Tatsuo  Tohoku University, Graduate School of Life Sciences, Associate Professor, 大学院・生命科学研究科, 助教授 (10270802)

Co-Investigator(Kenkyū-buntansha) YAMAMOTO Kazuo  Tohoku University, Graduate School of Life Sciences, Professor, 大学院・生命科学研究科, 教授 (20093536)
NAKABEPPU Yusaku  Kyushu University, Medical Institute of Bioregulation, Professor, 生体防御医学研究所, 教授 (30180350)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2004: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2003: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsSaccharomyces cerevisiae / 8-oxodGTP / d1TP / deamination / pyrophosphatase / genome instability / Loss of heterozygosity(LOH) / ヌクレオチド損傷 / 脱アミノ化 / dITPase / Loss of Heterozygosity ; LOH / spontaneous mutanegesis / 遺伝的不安定性 / 酸化損傷ヌクレオチド浄化酵素 / 脱アミノ損傷ヌクレオチド / 自然突然変異 / pyrophosphatase活性
Research Abstract

1.We have isolated YLR151c as a candidate for a functional homologue of E.coli mutT, and characterized as a novel Nudix hydrolase for oxidative nucleotide lesions such as 8-oxodGTP and 2-OH-dATP in Saccharomyces cerevisiae. We additionally tried to isolate human homologue of YLR151c. According to the results of database search, we chose two candidates, AAH18644 and XP058753, and examined 1)if the candidates can suppress the mutator phenotype of E.coli mutT-deficient mutant, and 2)if the purified recombinant gene products have the enzymatic activity as pyrophosphatase for 8-oxodGTP and 2-OH-dATP. However, we could not conclude that both candidates are homologue of YLR151c, yeast Nudix hydrolase for oxidative nucleotide lesions.
2.We have isolated a gene HAM1 and characterized the gene product as a pyrophosphatase for the deaminated nucleotide lesions such as dITP in Saccharomyces cerevisiae, and also examined its roles on genome stability in both haploid and diploid cells. In haploid cells, the deficiency in Ham1 did not affect spontaneous mutagenesis, whereas it caused hyper-induction of loss of heterozygosity (LOH), which is one of the indicators for genome instability in diploid cells, through hyper-induction of homologous recombination. This is the first finding indicating that endogenous nucleotide lesions cause not only mutagenesis in haploid cells but also genome instability such as hyper-recombination and LOH in diploid cells. Because LOH is the most commonly reported event linked with carcinogenesis, this finding may suggest the strong relationship of endogenous nucleotide lesions with cancer.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (41 results)

All 2005 2004 2003 Other

All Journal Article (39 results) Publications (2 results)

  • [Journal Article] Absence of strand bias for deletion mutagenesis during chromosomal leading and lagging strand replication in Escherichia coli2005

    • Author(s)
      Nagata Y
    • Journal Title

      Genes Genet Syst 80

      Pages: 1-8

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A functional analysis of the DNA glycosylase activity of mouse MUTYH protein excising 2-hydroxyadenine opposite guanine in DNA2005

    • Author(s)
      Ushijima Y
    • Journal Title

      Nucleic Acids Res 33

      Pages: 672-682

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Absence of strand bias for deletion mutagenesis during chromosomal leading and lagging strand replication in Escherichia coli2005

    • Author(s)
      Nagata Y, Kawaguchi G, Tago Y, Imai M, Watanabe T, Sakurai S, Ihara M, Kawata M, Yamamoto K
    • Journal Title

      Genes Genet Syst. 80

      Pages: 1-8

    • NAID

      130000062137

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A functional analysis of the DNA glycosylase activity of mouse MUTYH protein excising 2-hydroxyadenine opposite guanine in DNA2005

    • Author(s)
      Ushijima Y, Tominaga Y, Miura T, Tsuchimoto D, Sakumi K, Nakabeppu Y
    • Journal Title

      Nucleic Acids Res. 33

      Pages: 672-682

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A novel Nudix hydrolase for oxidized purine nucleoside triphosphates encoded by ORFYLR151c(PCD1 gene) in Saccharomyces cerevisiae2004

    • Author(s)
      Nunoshiba T
    • Journal Title

      Nucleic Acids Res 32

      Pages: 5339-5348

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Spontaneous mutagenesis in haploid and diploid Saccharomyces cerevisiae2004

    • Author(s)
      Ohnishi G
    • Journal Title

      Biochem Biophys Res Commun 325

      Pages: 928-933

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Saccharomyces cerevisiae RAD27 complements its Escherichia coli homolog in damage repair but not mutation avoidance2004

    • Author(s)
      Ohnishi G
    • Journal Title

      Genes Genet Syst 79

      Pages: 183-187

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Role of the RuvAB protein in avoiding spontaneous formation of deletion mutations in the Escherichia coli K-12 endogenous tonB gene2004

    • Author(s)
      Mashimo K
    • Journal Title

      Biochem Biophys Res Commun 323

      Pages: 197-203

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Loss of heterozygosity and DNA damage repair in Saccharomyces cerevisiae2004

    • Author(s)
      Daigaku Y
    • Journal Title

      Mutation Res 556

      Pages: 183-191

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates2004

    • Author(s)
      Mishima M
    • Journal Title

      J Biol Chem 279

      Pages: 33806-33815

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Probing the substrate recognition mechanism of the human MTH1 protein by nucleotide analogs2004

    • Author(s)
      Kamiya H
    • Journal Title

      J Mol Biol 336

      Pages: 843-850

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The defense mechanisms in mammalian cells against oxidative damage in nucleic acids and their involvement in the suppression of mutagenesis and cell death2004

    • Author(s)
      Nakabeppu Y
    • Journal Title

      Free Radical Res 38

      Pages: 423-429

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A novel Nudix hydrolase for oxidized purine nucleoside triphosphates encoded by ORFYLR151c (PCD1 gene) in Saccharomyces cerevisiae2004

    • Author(s)
      Nunoshiba T, Ishida R, Sasaki M, Iwai S, Nakabeppu Y, Yamamoto K
    • Journal Title

      Nucleic Acids Res. 32

      Pages: 5339-5348

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Spontaneous mutagenesis in haploid and diploid Saccharomyces cerevisiae2004

    • Author(s)
      Ohnishi G, Endo K, Doi A, Fujita A, Daigaku Y, Nunoshiba T, Yamamoto K
    • Journal Title

      Biochem Biophys Res Commun. 325

      Pages: 928-933

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Saccharomyces cerevisiae RAD27 complements its Escherichia coli homolog in damage repair but not mutation avoidance2004

    • Author(s)
      Ohnishi G, Daigaku Y, Nagata Y, Ihara M, Yamamoto K
    • Journal Title

      Genes Genet Syst. 79

      Pages: 183-187

    • NAID

      130000062114

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Role of the RuvAB protein in avoiding spontaneous formation of deletion mutations in the Escherichia coli K-12 endogenous tonB gene2004

    • Author(s)
      Mashimo K, Nagata Y, Kawata M, Iwasaki H, Yamamoto K
    • Journal Title

      Biochem Biophys Res Commun 323

      Pages: 197-203

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Loss of heterozygosity and DNA damage repair in Saccharomyces cerevisiae2004

    • Author(s)
      Daigaku Y, Endo K, Watanabe E, Ono T, Yamamoto K
    • Journal Title

      Mutation Res. 556

      Pages: 183-191

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates2004

    • Author(s)
      Mishima M, Sakai Y, Itoh N, Kamiya H, Furuichi M, Takahashi M, Yamagata Y, Iwai S, Nakabeppu Y, Shirakawa M
    • Journal Title

      J Biol Chem. 279

      Pages: 33806-33815

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Probing the substrate recognition mechanism of the human MTH1 protein by nucleotide analogs2004

    • Author(s)
      Kamiya H, Yakushiji H, Dugue L, Tanimoto M, Pochet S, Nakabeppu Y, Harashima H
    • Journal Title

      J Mol Biol. 336

      Pages: 843-850

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The defense mechanisms in mammalian cells against oxidative damage in nucleic acids and their involvement in the suppression of mutagenesis and cell death2004

    • Author(s)
      Nakabeppu Y, Tsuchimoto D, Furuichi M, Sakumi K
    • Journal Title

      Free Radical Res. 38

      Pages: 423-429

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Spontaneous mutagenesis in haploid and diploid Saccharomyces cerevisiae.2004

    • Author(s)
      Ohnishi, G
    • Journal Title

      Biochem Biophys Res Commn 325(3)

      Pages: 928-933

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A novel Nudix hydrolase for oxidized purine nucleoside triphosphates encoded by ORFYLR151c(PCDI gene) in Saccharomyces cerevisiae.2004

    • Author(s)
      Nunoshiba, T
    • Journal Title

      Nucleic Acids Res 32(18)

      Pages: 5339-5348

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Loss of heterozygosity and DNA damage repair in Saccharomyces cerevisiae.2004

    • Author(s)
      Daigaku, Y
    • Journal Title

      Mutation Res 556(1-2)

      Pages: 183-191

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Saccharomyces cerevisiae RAD27 complements its Escherichia coli homolog in damage repair but not mutation avoidance.2004

    • Author(s)
      Ohnishi, G
    • Journal Title

      Genes Genet Syst 79(3)

      Pages: 183-187

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Probing the substrate recognition mechanism of the human MTH1 protein by nucleotide analogs.2004

    • Author(s)
      Kamiya, H
    • Journal Title

      J Mol Biol 336(4)

      Pages: 843-850

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Hydrogen peroxide-induced microsatellite instability in the Eschrichia coli K-12 endogenous tonB gene2003

    • Author(s)
      Yamamura E
    • Journal Title

      Biochem.Biophys.Res.Commun. 306

      Pages: 570-576

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Roles of the RecJ and RecQ proteins in spontaneous formation of deletion mutations in the Escherichia coli K-12 endogenous tonB gene2003

    • Author(s)
      Mashimo K
    • Journal Title

      Mutagenesis 18

      Pages: 355-363

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A gene for ClassII DNA photolyase from Oryza sativa ; Cloning the cDNAc by dilution-amplification2003

    • Author(s)
      Hirouchi T
    • Journal Title

      Mol Gen Genet 269

      Pages: 508-516

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] X-ray-induced mutations in Escherichia coli K-12 strains with altered DNA polymerase I activities2003

    • Author(s)
      Nagata Y
    • Journal Title

      Mutation Res 528

      Pages: 93-103

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of high excision capacity for 5-hydroxymethyluracil mispaired with guanine in DNA of Escherichia coli MutM, Nei and Nth DNA glycosylases2003

    • Author(s)
      Hori M
    • Journal Title

      Nucleic Acids Res 31

      Pages: 1191-1196

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Ogg1 knockout-associated lung tumorigenesis and its suppression by Mth1 gene disruption2003

    • Author(s)
      Sakumi K
    • Journal Title

      Cancer Res 63

      Pages: 902-905

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] An oxidized purine nucleoside triphosphatase, MTH1, suppresses cell death caused by oxidative stress2003

    • Author(s)
      Yoshimura D
    • Journal Title

      J Biol Chem 278

      Pages: 37965-37973

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Hydrogen peroxide-induced microsatellite instability in the Escherichia coli K-12 endogenous tonB gene.2003

    • Author(s)
      Yamamura E, Nunoshiba T, Nohmi T, Yamamoto K
    • Journal Title

      Biochem Biophys Res Commun. 306

      Pages: 570-576

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Roles of the RecJ and RecQ proteins in spontaneous formation of deletion mutations in the Escherichia coli K-12 endogenous tonB gene2003

    • Author(s)
      Mashimo K, Kawata M, Yamamoto K
    • Journal Title

      Mutagenesis 18

      Pages: 355-363

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A gene for Class II DNA photolyase from Oryza sativa ; Cloning the cDNA by dilution-amplification.2003

    • Author(s)
      Hirouchi T, Nakajima S, Najrana T, Tanaka M, Matsunaga T, Hidema J, Teranishi M, Fujino T, Kumagai T, Yamamoto K
    • Journal Title

      Molecular and General Genetics 269

      Pages: 508-516

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] X-ray-induced mutations in Escherichia coli K-12 strains with altered DNA polymerase I activities2003

    • Author(s)
      Nagata Y, Kawata M, Komura J, Ono T, Yamamoto K
    • Journal Title

      Mutation Res. 528

      Pages: 93-103

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of high excision capacity for 5-hydroxy methyluracil mispaired with guanine in DNA of Escherichia coli MutM, Nei and Nth DNA glycosylases2003

    • Author(s)
      Hori M, Yonei S, Sugiyama H, Kino K, Yamamoto K, Zhang Q
    • Journal Title

      Nucleic Acids Res. 31

      Pages: 1191-1196

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Ogg1 knockout-associated lung tumorigenesis and its suppression by Mth1 gene disruption2003

    • Author(s)
      Sakumi K, Tominaga Y, Furuichi M, Xu P, Tsuzuki T, Sekiguchi M, Nakabeppu Y.
    • Journal Title

      Cancer Res. 63

      Pages: 902-905

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] An oxidized purine nucleoside triphosphatase, MTH1, suppresses cell death caused by oxidative stress2003

    • Author(s)
      Yoshimura D, Sakumi K, Ohno M, Sakai Y, Furuichi M, Iwai S, Nakabeppu Y
    • Journal Title

      J Biol Chem. 278

      Pages: 37965-37973

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Yamamura E: "Hydrogen peroxide-induced microsatellite instability in the Escherichia coli K-12 endogenous tonB gene"Biochem Biophys Res Commun. 306(2). 570-576 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yoshimura D: "An oxidized purine nucleoside triphosphatase, MTH1, suppresses cell death caused by oxidative stress"J Biol Chem. 278(39). 37965-37973 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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