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Study on the molecular conformational equilibrium of butane for the development of an experimental model system of the hydrophobic effect

Research Project

Project/Area Number 15550020
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical chemistry
Research InstitutionRitsumeikan University

Principal Investigator

KATO Minoru  Ritsumeikan University, Faculty of Science and Engineering, Professor, 理工学部, 教授 (00241258)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 2004: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2003: ¥1,000,000 (Direct Cost: ¥1,000,000)
KeywordsConformational Equilibrium / Butane / Raman Spectroscopy / Peptide / Hydrophobic Effect / ラマン / FT-IR / 水溶液 / 鎖状分子 / 熱力学量 / ブンタン / ヘキサン / ハロアセトン / 部分モル体積
Research Abstract

It is well-known that the hydrophobic effect is a critical factor for structural stability of proteins. The purpose of this project is to develop an experimental model for the hydrophobic effect. As a model, we investigated conformational equilibrium of simple chain molecules by using Raman spectroscopy. The most simple and ideal model is the trans gauche equilibrium of butane. We first target this system in aqueous solution. However, it was difficult to observe the equilibrium by Raman spectroscopy due to the low solubility of butane into water. During this project term, we succeed to observe qualitatively the equilibrium, indicating that the relative population of the gauche conformer increased compared with the organic solvent systems. The further experiments for the quantitative analysis are in progress. As another targets we investigated trans-gauche/gauche-gauche equilibrium of diethyl disulfide, which is a model for disulfide bonds for proteins. We elucidated the effect of temperature and pressure on the equilibrium, and discuss the phenomena in comparison with the conformational change of disulfide of a protein when it unfolds. The other research results were obtained for a simple peptide system. We target a simple alanine-rich peptide as a model molecule, which is suitable to observe the helix-coil equilibrium in water. Effect of pressure on the equilibrium showed that the relative population of helix form increases with increasing pressure. This behavior is apparently inconsistent with pressure-induced unfolding of protein. Further projects for elucidating the inconsistency are in progress.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (13 results)

All 2005 2004 2003 Other

All Journal Article (10 results) Publications (3 results)

  • [Journal Article] Raman Study of Pressure and Temperature Effects on the Conformational Equilibrium of Diethyl Disulfide in Solutions2005

    • Author(s)
      M.Kato, H.Tsuchiya, Y.Taniguchi
    • Journal Title

      Bull. Chem. Soc. Jpn 78

      Pages: 1411-1416

    • NAID

      10019038824

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Pressure-tuning FT-IR spectroscopic study on the helix-coil transition of Ala-rich oligopeptide in aqueous solution2005

    • Author(s)
      T.Takekiyo, A.Shimizu, M.Kato, Y.Taniguchi
    • Journal Title

      Biochim. Biophys. Acta 1750

      Pages: 1-4

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Theoretical Study of Volume Changes Associated with the Helix-Coil Transition of an Alanine-Rich Peptide in Aqueous Solution2005

    • Author(s)
      T.Imai, T.Takekiyo, A.Kovalenko, F.Hiata, M.Kato, Y.Taniguchi
    • Journal Title

      Bioplymer 79

      Pages: 97-105

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Temperature and Pressure Effects on Conformatonal Equilibria of Alanine Dipeptide in Aqueous Solution2004

    • Author(s)
      Takahiro Takekiyo et al.
    • Journal Title

      Biopolymers 73

      Pages: 283-290

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Pressure Effect on Conformational Equilibria of Analog Peptides in Aqueous Solution by Raman Spectroscopy2004

    • Author(s)
      Takahiro Takekiyo et al.
    • Journal Title

      J.Sol.Chem. 33

      Pages: 761-775

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Effects of Pressure and Solvents on the Infrared Absorption Intensity of the O-H Stretching Mode of Phenol in Solutions2004

    • Author(s)
      Hideto Isogai et al.
    • Journal Title

      Spectrochim.Acta PartA 60

      Pages: 3135-3139

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Pressue Effect on the Helix-Coil Transition of as Ala-Rich Peptide in Aqueous Solution2004

    • Author(s)
      Takahiro Takekiyo et al.
    • Journal Title

      AIP Conference Proceedings 716

      Pages: 184-187

    • Related Report
      2004 Annual Research Report
  • [Journal Article] FT-IR Spectroscopic Study on Conformational Equilibria of [Leu]^5-Enkephalin in DMSO and ^2H_2O Solutions2004

    • Author(s)
      Takahiro Takekiyo et al.
    • Journal Title

      J.Mol.Liq. 119(1-3)

      Pages: 147-152

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Raman Study of Hydration Effect on Conformational Equilibria of Haloacetones2003

    • Author(s)
      Yosuke Shiratori et al.
    • Journal Title

      Bull.Chem.Soc.Jpn 76

      Pages: 501-507

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 「研究成果報告書概要(欧文)」より

    • Author(s)
      M.Kato, H.Tsuchiya, Y.Taniguchi
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Y.Shiratori, Y.Nanba, M.Kato, Y.Taniguchi: "Raman Study of Hydration Effect on Conformational Equilibria of Haloacetones"Bull.Chem.Soc.Jpn. 76. 501-507 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] W.Dzwolak, T.Muraki, M.Kato, Y.Taniguchi: "Chain-Length Dependence of α-Helix to β-sheet Transition in Polylysine : Model of Protein Aggregation Studied by Temperature-Tuned FTIR Spectroscopy"Biopolymers. 73. 463-469 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Isogai, M.Kato, Y.Taniguchi: "Effects of Pressure and Solvents on the Infrared Absorption Intensity of the O-H Stretching Mode of Phenol in Solutions"Spectrochim.Acta Part A. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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