• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Mechanism of organic reaction in solution : kinetics experiment and new QM/MM computations

Research Project

Project/Area Number 15550034
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Organic chemistry
Research InstitutionRikkyo University (2004)
Osaka University (2003)

Principal Investigator

YAMATAKA Hiroshi  Rikkyo University, Professor, 理学部, 教授 (60029907)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2004: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2003: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsQM / MM calculations / molecular orbital calculations / molecular dynamics simulations / solvent effect / reaction pathways / transition state / nitroalkane anomaly / Grignard reaction mechanism / 遷移状 / 非経験的分子軌道法計算 / 安定単純エノール / 遷移状態構造 / 直線自由エネルギー関係則
Research Abstract

Computational study with a QM/MM method has been carried out for S_N1-S_N2 reactions of alkyl halides in water, and the effect of solvent on the reaction pathways and the transition state structures was analyzed. The results were presented in domestic and oversea meetings. We are currently studying organic reactions in solution with Fragment MO(FMO) method as well.
Activation and reaction energies were calculated for acid-base reactions of nitromethane, nitroethane, and substituted phenyllnitromethanes in the gas phase, water-solvated cluster, and solution systems. The experimentally observed nitroalkane anomaly in the proton-transfer rate-equilibrium correlation for the nitromethane and nitroethane systems was reproduced in solution but not in the gas phase. The origin of the anomaly was analyzed, and the importance of solvation was demonstrated. However, the anomaly in the Bronsted correlation for the arylnitromethane system could not be reproduced computationally even in solution. We plan to elucidate this problem by using QM/MM and FMO methods.
Kinetic study was carried out for the carbonyl addition reactions. Stopped-flow experiment for the reactions of substituted benzaldehyde and benzopohenones with RLi and RMgX revealed that these reagents exist as aggregates (tetramer or dimer) and react as monomers. Other basic organic reactions such as molecular rearrangements and keto-enol isomerizations were studied both experimentally and computationally.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (13 results)

All 2004 2003 Other

All Journal Article (8 results) Book (1 results) Publications (4 results)

  • [Journal Article] Direct Rate Measurements of the Reactions of Benzophenone with RMgX and RLi : Effects of Substituents and Reagent Concentration on Rates2004

    • Author(s)
      M.Shimizu, H.Yamataka
    • Journal Title

      Bulletin of the Chemical Society of Japan 77

      Pages: 1757-1761

    • NAID

      10013584847

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Dual Activation in a Homolytic Coupling Reaction Promoted by an Enantioselective Dinuclear Vanadium(IV) Catalyst2004

    • Author(s)
      H.Somei, Y.Asano, T.Takizawa, H.Yamataka, H.Sasai
    • Journal Title

      Tetrahedron Letters 45

      Pages: 1841-1844

    • NAID

      130006997291

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] The Chemistry of Organo lithium Compounds : Addition of Organolithium Reagents to Double Bonds2004

    • Author(s)
      H.Yamataka, K.Yamada, K.Tomioka
    • Journal Title

      The Chemistry of Functional Group

      Pages: 901-939

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Ab Initio Molecular Dynamics Studies on Substitution vs. Electron Transfer Reactions of Substituted Ketyl Radical Anions with Chloroalkanes : How Do the Two Products Form in a Borderline Mechanism?2003

    • Author(s)
      H.Yamataka, M.Aida, M.Dupuis
    • Journal Title

      Journal of Physical Organic Chemistry 16

      Pages: 475-483

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The 1-N-(methoxycarbonyl-2-phenylethyl)imino-2,2,2-trifluoroethanephosphonate Systems are not Stable Enols of Carboxylic Esters2003

    • Author(s)
      J.Song, H.Yamataka, Z.Rappoport
    • Journal Title

      Journal of Fluorine Chemistry 124

      Pages: 119-122

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Are Linear Free Energy Relationship and Kinetic Isotope Effects Good Measures for the Transition State Variation? A Computational Study2003

    • Author(s)
      S.C.Ammal, M.Mishima, H.Yamataka
    • Journal Title

      Journal of Organic Chemistry 68

      Pages: 7772-7778

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Nitroalkane Anomaly : Computational Study with Cluster and Continuum Modeling2003

    • Author(s)
      H.Yamataka, S.C.Ammal
    • Journal Title

      ARKIVOC

      Pages: 56-68

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The 1-N-(methoxycarbonyl-2-phenylethyl)imino-2,2,2-trifluoroethane-phosphonate Systems are not Stable Enols of Carboxylic Esters2003

    • Author(s)
      J.Song, H.Yamataka, Z.Rappoport
    • Journal Title

      Journal of Fluorine Chemistry 124

      Pages: 119-122

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] The Chemistry of Organolithium Compounds : Addition of Organolithium Reagents to Double Bonds2004

    • Author(s)
      H.Yamataka, K.Yamada, K.Tomioka
    • Publisher
      John Wiley & Sons, Ltd.
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Publications] H.Yamataka: "Nitroalkane anomaly : Computational study with cluster and continuum modeling"Arkivoc. 59-68 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] S.C.Ammal: "Are Linear Free Energy Relationship and Kinetic Isotope Effects Good Measures for the Transition State Variation? A Computational Study"Journal of Organic Chemistry. 68. 7772-7778 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] J.Song: "The 1-N-(methoxycarbonyl-2-phenylethyl)imino-2,2,2-trifluoroethanephosphonate systems are not stable enols of carboxylic esters"Journal of Fluorine Chemistry. 124. 119-121 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Yamataka: "Ab Initio Molecular Dynamics Studies on Substitution vs. Electron Transfer Reactions of Substituted Ketyl Radical Anions with Chloroalkanes"Journal of Physical Organic Chemistry. 16. 475-483 (2003)

    • Related Report
      2003 Annual Research Report

URL: 

Published: 2003-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi