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Functional conversion of dinuclear metalloenzymes : Oxidase activities of metal substituted ureases

Research Project

Project/Area Number 15550147
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionOsaka University

Principal Investigator

YAMAGUCHI Kazuya  Osaka University, Graduate School of Science, Associate Professor, 理学研究科, 助教授 (80252550)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,900,000)
Fiscal Year 2004: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2003: ¥2,800,000 (Direct Cost: ¥2,800,000)
Keywordsurease / metalloenzyme / bioinorganic chemistry / nickel / oxidase / 複核金属 / 金属タンパク質
Research Abstract

Urease is a Ni-containing enzyme that catalyzes the hydrolysis of urea to form ammonia and carbamate. It possesses a dinuclear Ni active site with the protein providing a bridging carbamylated lysine residue as well as an aspartyl and four histidyl ligands. Meanwhile some metalloenzymes that have dinuclear metal ions in the active site have been known. For example, tyrosinase is believed to have coupled dinuclear copper active site similar to those of hemocyanin and catechol oxidase, where each of two copper ions is coordinated to three histidine imidazoles. Methane monooxygenase has dinuclear iron active site where each iron ion is coordinated by six atoms, they include one nitorogen derived from His and five oxygen comprised of glutamic acid residues, bridging hydroxides, and a terminal water. Manganese containing catalase has also dinuclear manganese active site. In this research project, we prepared some metal substituted ureases, and investigated the oxidase activities of the meta … More l substituted ureases. As the results, we found that the copper-substituted urease showed tyrosinase activity, which is the oxidation of phenols to o-quinones. Although native urease (Ni) and apo protein (apo) did not catalyze any reactions, Cu-urease (Cu) was observed to have mono- and di-phenolase activities. Furthermore, K217A mutant of Cu-urease, which has no bridging amino acid residue of metal ions in the active site showed higher tyrosinase activity than wild-type Cu-urease. The structure of active site in the mutant would similar as that in copper-containing catechol oxidase. We also found that iron substituted urease was observed to catalyze the peroxidation of guaiacol, although apo did not catalyze any oxidation reactions. The result suggests that iron substituted urease could be a good model for methane monooxygenase which has dinuclear iron active site. Furthermore, we found that manganese substituted urease had catalase activity that hydrogen peroxide was disproportioned into dioxygen and water. These findings suggest that the function of metalloenzyme can be changed by metal substitution. Less

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (23 results)

All 2005 2004 2003 Other

All Journal Article (18 results) Publications (5 results)

  • [Journal Article] The Intramolecular Electron Transfer between the Type 1 Cu and the Type 2 Cu Centers in a Mutant of Hyphomicrobium Nitrite Reductases2005

    • Author(s)
      Shinnichiro Suzuki
    • Journal Title

      Chem.Lett. 34

      Pages: 36-37

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structural Reorganization of Copper Binding Site Involving Thr^<15> of Mavicyanin from Cucurbita pepo medullosa (Zucchini) upon Reduction2005

    • Author(s)
      Yong Xie
    • Journal Title

      J.Biochem. (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Cu(I) and Cu(II) Complexes Containing Nitrite and Tridentate Aromatic Amine Ligand as Models for Substrate-Binding Type 2 Cu Site of Nitrite Reductases2005

    • Author(s)
      Hiroshi Yokoyama
    • Journal Title

      Eur.J.Inorg.Chem 2005

      Pages: 1435-1441

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of Two Type 1 Cu Sites of Hyphomicrobium denitrificans Nitrite Reductase : A New Class of Copper-containing Nitrite Reductases2004

    • Author(s)
      Kazuya Yamaguchi
    • Journal Title

      Biochemistry 43

      Pages: 14180-14188

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray crystallographic studies of dissimilatory nitrite reductase isolated from Hyphomicrobium denitrificans A31512004

    • Author(s)
      Yong Xie
    • Journal Title

      Acta Cryst.D. 60

      Pages: 2383-2386

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure-based engineering of Alcaligenes xylosoxidans copper-containing nitrite reductase enhances intermolecular electron transfer reaction with pseudoazurin2004

    • Author(s)
      Kunishige Kataoka
    • Journal Title

      J.Biol.Chem. 51

      Pages: 53374-53378

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray crystallographic studies of dissimilatory nitrite reductase isolated from Hyphomicrobium denitrificans A31512004

    • Author(s)
      Yong Xie
    • Journal Title

      Acta Crystal.Sect D 60

      Pages: 2383-2386

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure-based engineering of Alcaligenes xylosoxidans copper-containing nitrite reductase enhances intermolecular electron transfer reaction with pseudoazurin2004

    • Author(s)
      Kunishige Kataoka
    • Journal Title

      J.Biol.Chem 51

      Pages: 53374-53378

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of two Cu-containing protein fragments obtained by limited proteolysis of Hyphomicrobium denitrificans A3151 nitrite reductase2003

    • Author(s)
      Kazuya Yamaguchi
    • Journal Title

      Biochem.Biophys.Res.Commun. 300

      Pages: 36-40

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization and function of Met150Gln mutant of copper-containing nitrite reductase from Achromobacter cycloclastes IAM10132003

    • Author(s)
      Kunishige Kataoka
    • Journal Title

      Biochem.Biophys.Res.Commun. 303

      Pages: 519-524

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray crystallographic studies of mavicyanin from Cucurbita pepo medullosa2003

    • Author(s)
      Yong Xie
    • Journal Title

      Acta Cryst.D. 59

      Pages: 1474-1476

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of unusual multicopper nitrite reductase containing blue and green type 1 Cu ions2003

    • Author(s)
      Shinnichiro Suzuki
    • Journal Title

      J.Inorg.Biol.Chem. 96

      Pages: 26-26

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Nitrous oxide reductase from Hyphomicrobium denitrificans A31512003

    • Author(s)
      Kazuya Yamaguchi
    • Journal Title

      J.Inorg.Biol.Chem. 96

      Pages: 252-252

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The significance of the flexible loop in the azurin (Az-iso2) from obligate methylotroph Methylomonas sp. strain J2003

    • Author(s)
      Tsuyoshi Inoue
    • Journal Title

      J.Mol.Biol. 333

      Pages: 117-124

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Preparation and Characterization of Nitrous Oxide Reductase from Hyphomicrobium denitrificans A31512003

    • Author(s)
      Kazuya Yamaguchi
    • Journal Title

      J.Biochem. 134

      Pages: 853-858

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of unusual multicopper nitrite reductase containing blue and green type 1 Cu ions2003

    • Author(s)
      Shinnichiro Suzuki
    • Journal Title

      J.Inorg.Biol.Chem 96

      Pages: 26-26

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Nitrous oxide reductase from Hyphomicrobium denitrificans A31512003

    • Author(s)
      Kazuya Yamaguchi
    • Journal Title

      J.Inorg.Biol.Chem 96

      Pages: 252-252

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The significance of the flexible loop in the azurin (Az-iso2) from obligate methylotroph Methylomonas sp.strain J2003

    • Author(s)
      Tsuyoshi Inoue
    • Journal Title

      J.Mol.Biol. 333

      Pages: 117-124

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Kazuya Yamaguchi: "Characterization of two Cu-containing protein fragments obtained by limited proteolysis of Hyphomicrobium denitrifions A3151 nitrite reductase"Biochem, Biophys.Res.Commun.. 300. 36-40 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kazuya Yamaguchi: "Characterization and function of Met150Gln mutant of copper-containing nitrite reductase from Achromobactor cyclodastes IAM1013"Biochem, Biophys.Res.Commun.. 303. 519-524 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kazuya Yamaguchi: "Preparation and Characterzation of Nitrous Oxide reductase from Hyphomicrobium denitrificans A3151"J.Biochem.. 134. 853-858 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kazuya Yamaguchi: "Nitrous oxide reductase from Hyphomicrobium denitrificans A3151"J.Imorg.Biol.Chem.. 96. 26-26 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kazuya Yamaguchi: "Characterization of unusual multicopper nitrite containing blue and green type 1 Cu ions, Nitrous Oxide reductase from Hyph"J.Inorg.Biol.Chem.. 96. 252-252 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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