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The Development of the Method to Introduce the Selective Point Mutation using the Reactive Oligonucleotides

Research Project

Project/Area Number 15550148
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionKYUSHU UNIVERSITY

Principal Investigator

NAGATSUGI Fumi  Kyushu University, Faculty of Pharmaceutical Sciences, Associate Professor, 薬学研究院, 助教授 (90208025)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2004: ¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 2003: ¥2,100,000 (Direct Cost: ¥2,100,000)
Keywords2-amino-6-vinyopurine / antisense / reactive nucleic acids / genome targeted chemistry / point mutation by chemical method / double acativation / drug delivery system / 2-アミノ-6-ビニルプリン / ゲノム標的化学 / ポストモディフィケーション
Research Abstract

The selective reaction to the gene would have the potential for site-directed mutation. We already demonstrated that triple helix oligonucelotides (TFO) bearing 2-amino-6-vinypurine derivative achieved the selective point mutaitions to a target site in a shuttle vector plasmid, which replicates in mammalian cells. These reactions were very effective in vitro under acidic conditions, but the reactive derivatives to react to the target under neutral condition are necessary for application to the cell. In 2003,we have investigated the new triplex mediated cross-linking reagents with high selectivity toward the target under neutral conditions. We synthesized those reactive TFO using post modification method and studied about the reactivity of them. Unfortunately, these reactive TFO did not react to the target duplex, because these oligonucelotides having reactive molecules were not be able to form the stable triple helix with the targets. Thus, in 2004, we have attempted to develop the novel more reactive derivatives. In these results, we have exploited the more reactive derivatives, which react to cytidine selectively to give the adducts in 50 % yield only after 5 hrs. In addition, we have demonstrated that reactive oligonucelotides increase the efficiency of the antisense inhibition in the cell. These results suggest that these cross-linking reagents may react with the target in the cell. In conclusion, we have developed the high effective cross-linking reagents to react in the cell. Based on the results, we would like to investigate the development of chemical methods to occur the point mutation in the cell.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (26 results)

All 2005 2004 2003 Other

All Journal Article (22 results) Publications (4 results)

  • [Journal Article] Hybridization-Promoted and Cytidine-Selective Activation for Cross-Linking with the Use of 2-Amino-6-Vinylpurine Derivatives2005

    • Author(s)
      T.Kawasaki, F.Nagatsugi, Md.Monsur Ali, M.Maeda, K.Sugiyama, K.Hori, S.Sasaki
    • Journal Title

      J.Org.Chem. 70

      Pages: 14-23

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Smart Polyion Complex Micelles for Targeted IntracellularDelivery of PEGylated Antisense Oligonucleotide with Acid-Labile Linkag2005

    • Author(s)
      M.Oishi, F.Nagatsugi, S.Sasaki, Y.Nagasaki, K.Kataoka
    • Journal Title

      Chem Bio Chem 6

      Pages: 718-725

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Hybridization-Promoted and Cytidine-Selective Activation for Cross-Linking with the Use of 2-Amino-6-Vinylpurine Derivatives2005

    • Author(s)
      T.Kawasaki, F.Nagatsugi, Md.M.Ali, M.Maeda, K.Sugiyama, K.Hori, S.Sasaki
    • Journal Title

      J.Org.Chem. 70(1)

      Pages: 14-23

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Smart Polyion Complex Micelles for Targeted Intracellular Delivery of PEGylated Antisense Oligonucleotide with Acid-Labile Linkage2005

    • Author(s)
      M.Oishi, F.Nagatsugi, S.Sasaki, Y.Nagasaki, K.Kataoka
    • Journal Title

      Chem Bio Chem 6

      Pages: 718-725

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Smart Polyion Complex Micelled for Targeted IntracellularDelivery of PEGylated Antisense Oligonucleotide with Acid-Labile Linkag2005

    • Author(s)
      M.Oishi, F.Nagatsugi, S.Sasaki, Y.Nagasaki, K.Kataoka
    • Journal Title

      Chem Bio Chem (in press)(印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Sequence- and Base-Specific Delivery of Nitric Oxide to Cytidine and 5-Methylcytidine Leading to Efficient Deamination2004

    • Author(s)
      Md.M.Ali, Md.R.Alam, T.Kawasaki, F.Nagatsugi, S.Sasaki
    • Journal Title

      J.Am.Chem.Soc. 126

      Pages: 8864-8865

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Selective Nitrosyl Group Transfer Reaction to Cytidine Using Oligonucleotides Bearing S-Nitrosothioguanosine2004

    • Author(s)
      F.Nagatsugi, S.Nakayama, Ali Md.Monsur, S.Sasaki
    • Journal Title

      Nucleic Acids Res.Symp.Ser. 48

      Pages: 23-24

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Efficient Antisense Effect Using the Functional Oligonucleotides Containing Cross-linking Agents Conjugated PEG,2004

    • Author(s)
      Ali Md.Monsur, F.Nagatsugi, M.Ohishi, Y.Nagasaki, K.Kataoka, S.Sasak
    • Journal Title

      Nucleic Acids Res.Symp.Ser. 48

      Pages: 61-62

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Chemical Tools for Targeted Mutagenesis of DNA Based on Triple Helix Formation2004

    • Author(s)
      F.Nagatsugi, S.Sasaki
    • Journal Title

      Biol.Pharm.Bull. 27

      Pages: 463-467

    • NAID

      110003608787

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Selective Formation of Stable Triplexes Including a TA or a CG Interrupting Site with New Bicyclic Nucleoside Analogs (WNA)2004

    • Author(s)
      S.Sasaki, Y.Taniguchi, Y.Senko, K.Kodama, F.Nagatsugi, M.Maeda
    • Journal Title

      J.Am.Chem.Soc. 126

      Pages: 516-528

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Chemical Tools for Targeted Mutagenesis of DNA Based on Triple Helix Formation.2004

    • Author(s)
      F.Nagatsugi, S.Sasaki
    • Journal Title

      Biol.Pharm.Bull. 27

      Pages: 463-467

    • NAID

      110003608787

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Efficient Antisense Effect Using the Functional Oligonucleotides Containing Cross-linking Agents Conjugated PEG2004

    • Author(s)
      Ali Md.Monsur, F.Nagatsugi, M.Ohishi, Y.Nagasaki, K.Kataoka, S.Sasaki
    • Journal Title

      Nucleic Acids Res.Symp.Ser. 48

      Pages: 61-62

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Sequence-and Base-Specific Delivery of Nitric Oxide to Cytidine and 5-Methylcytidine Leading to Efficient Deamination2004

    • Author(s)
      Md.M.Ali, Md.R.Alam, T.Kawasaki, F.Nagatsugi, S.Sasaki
    • Journal Title

      J.Am.Chem.Soc. 126

      Pages: 8864-8865

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Selective Nitrosyl Group Transfer Reaction to Cytidine Using Oligonucleotides Bearing S-Nitrosothioguanosine2004

    • Author(s)
      F.Nagatsugi, S.Nakayama, Ali Md.Monsur., S.Sasaki
    • Journal Title

      Nucleic Acids Res.Suppl. 48

      Pages: 23-24

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Chemical Tools for Targeted Mutagenesis of DNA Based on Triple Helix Formation2004

    • Author(s)
      F.Nagatsugi, S.Sasaki
    • Journal Title

      Biol.Pharm.Bull.

      Pages: 463-467

    • NAID

      110003608787

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Efficient Antisense Effect Using the Functional Oligonucleotides Containing Cross-linking Agents Conjugated PEG2004

    • Author(s)
      Ali Md.Monsur, F.Nagatsugi, M.Ohishi, Y.Nagasaki, K.Kataoka, S.Sasak
    • Journal Title

      Nucleic Acids Res.Suppl. 48

      Pages: 61-62

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Site-Specific Mutagenesis by Triple-Helix Forming Oligonucleotides Containing a Reactive Nucleoside Analogue2003

    • Author(s)
      Fumi Nagatsugi et al.
    • Journal Title

      Nucleic Acids Res. 31

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Enhancement and inhibition by 2'-O-hydroxyethyl residues of gene targeting mediated by triple helix forming oligonucleotides2003

    • Author(s)
      Kundu M, Nagatsugi F et al.
    • Journal Title

      Nucleosides Nucleotides NucleicAcids. 22(10)

      Pages: 1927-1938

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Efficient cross-linking reactions by functional nucleobases capable of in situ activation under neutral conditions2003

    • Author(s)
      F.Nagatsugi, Y.Suenaga, S.Sasaki
    • Journal Title

      Nucleic Acids Res.Suppl. 3

      Pages: 155-156

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Site-Specific Mutagenesis by Triple-Helix Forming Oligonucleotides Containing a Reactive Nucleoside Analogue2003

    • Author(s)
      F.Nagatsugi, S.Sasaki, P.S.Miller, M.M.Seidman
    • Journal Title

      Nucleic Acids Res. 31

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Enhancement and inhibition by 2'-O-hydroxyethyl residues of gene targeting mediated by triple helix forming oligonucelotides2003

    • Author(s)
      Kundu M, Nagatsugi F, Majumdar A, Miller PS, Seidman MM.
    • Journal Title

      Nucleosides Nucleotides Nucleic Acids. 22(10)

      Pages: 1927-1938

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Efficient cross-linking reactions by functional nucleobases capable of in situ activation under neutral conditions2003

    • Author(s)
      F.Nagatsugi, Y.Suenaga, S.Sasaki
    • Journal Title

      Nucleic Acids Res. Suppl., 3

      Pages: 155-156

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Fumi Nagatsugi et al.: "Site-Specific Mutagenesis by Triple-Helix Forming Oligonucleotides Containing a Reactive Nucleoside Analogue"Nucleic Acids Res.. 6. e31 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kundu M, Nagatsugi F et al.: "Enhancement and inhibition by 2'-O-hydroxyethyl residues of gene targeting mediated by triple helix forming oligonucleotides"Nucleosides Nucleotides Nucleic Acids. 22(10). 1927-1938 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Fumi Nagatsugi et al.: "Efficient cross-linking reactions by functional nucleobases capable of in situ activation under neutral conditions"Nucleic Acids Res.Suppl. 3. 155-156 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sasaki, S., Taniguchi, Y, Takahashi, R., Senko, Y., Kodama, K., Nagatsugi, F., Maeda M: "Selective Formation of Stable Triplexes Including a TA or a CG Interrupting Site with New Bicyclic Nucleoside Analogs (WNA)"J.Am.Chem.Soc.. 126. 516-528 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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