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How does heme degrade ? -Studies of the catalytic mechanism of heme oxygenase based on its crystal structures-

Research Project

Project/Area Number 15550155
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionKyushu Institute of Technology (2005)
Kurume University (2003-2004)

Principal Investigator

SAKAMOTO Hiroshi  Kyushu Institute of Technology, Faculty of Computer Science and Systems Engineering, Assistant Professor, 情報工学部, 助教授 (70309748)

Co-Investigator(Kenkyū-buntansha) NOGUCHI Masato  Kurume University, school of medicine, Dept.Med.Biochem., Professor, 医学部, 教授 (10124611)
HAGASHIMOTO Yuichiro  Kurume University, school of medicine, Dept.Med.Biochem., Lecturer, 医学部, 講師 (40352124)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2005: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2004: ¥1,300,000 (Direct Cost: ¥1,300,000)
Fiscal Year 2003: ¥1,500,000 (Direct Cost: ¥1,500,000)
Keywordsheme oxygenase / heme degradation / reaction intermediate / enzyme kinetics / NADPH-cytochrome P450 reductase / electron transfer / stopped-flow analysis / reactive oxygen species / 電子スピン共鳴 / 蛋白質-蛋白質間相互作用 / 表面プラズモン共鳴 / 蛋白質-蛋白質相互作用
Research Abstract

Heme oxygenase-1 (HO-1) catalyzes the physiological degradation of heme at the expense of molecular oxygen using electrons donated by NADPH-cytochrome P450 reductase (CPR). We obtained the results (1)-(3) in this project.
(1) We investigated whether or not hydroxylamine (HA) and hydrazine (HZ) interact with heme bound to heme oxygenase-1. Anaerobic addition of either HA or HZ to the ferric heme-enzyme complex produced a low-spin heme species. Titration studies at different pHs revealed that the neutral form of each of HA and HZ selectively binds to the heme with dissociation constants of 9.8 and 1.8 mM, respectively. Electron spin resonance analysis suggested that the nitrogen atom of each amine is coordinated to the ferric heme iron.
(2) We investigated the effect of NADP(H) on the interaction of HO-1 with CPR by surface plasmon resonance and analyzed by computer modeling of the HO-1/CPR complex. The guanidino group of Arg-185 is located within the hydrogen bonding distance of 2'-phosph … More ate of NADPH, suggesting that Arg-185 contributes to the binding to CPR through an electrostatic interaction with the phosphate group. On the other hand, Lys-149 is close to a cluster of acidic amino acids near the FMN binding site of CPR. Thus, Lys-149 and Lys-153 appear to interact with CPR in such a way as to orient the redox partners for optimal electron transfer from FMN of CPR to heme of HO-1.
(3) O_2-dependent reactions of the ferric and ferrous forms of α-hydroxyheme complexed with water-soluble rat heme oxygenase-1 were examined by rapid-scan stopped-flow measurements. We demonstrate that either the ferric or ferrous form of α-hydroxyheme can be converted to verdoheme in O_2-depending manner in vitro. Ferric α-hydroxyheme is converted to ferric verdoheme by direct attack of 0_2 on the π-neutral radical form and ferrous α-hydroxyheme is converted to ferrous verdoheme via the 815-nm species. In view of the ambient oxygen concentration and efficiency of NADPH-cytochrome P450 reductase system in tissues, we consider that the ferric α-hydroxyheme to ferric verdoheme pathway prevails in vivo. Less

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (43 results)

All 2005 2004 2003 Other

All Journal Article (35 results) Book (2 results) Publications (6 results)

  • [Journal Article] Involvement of NADP(H) in the interaction between heme oxygenase-1 snd cytochrome P450 reductase2005

    • Author(s)
      Yuichiro Higashimoto
    • Journal Title

      Journal of Biological Chemistry 280・1

      Pages: 729-737

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ヘムオキシゲナーゼの立体構造からみた反応機構2005

    • Author(s)
      坂本 寛
    • Journal Title

      生化学 77・7

      Pages: 634-638

    • NAID

      10016603348

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A kinetic study of the mechanism of conversion of α-hydroxyheme to verdoheme while bound to heme oxygenase2005

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Biochemical and Biophysical Research Communications 338・1

      Pages: 578-283

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Neuroprotective mechanisms of lidocaine against in vitro ischemic insult of the rat hippocampal CA1 pyramidal neurons2005

    • Author(s)
      Shuhei Niiyama
    • Journal Title

      Neuroscience Research 53・3

      Pages: 271-278

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Involvement of NADP(H) in the interaction between heme oxygenase-1 and cytochrome P450 reductase.2005

    • Author(s)
      Yuichiro Higashimoto
    • Journal Title

      Journal of Biological Chemistry 280-1

      Pages: 729-737

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Structure and mechanism of heme oxygenase.2005

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      SEIKAGAKU 77-7

      Pages: 634-638

    • NAID

      10016603348

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A kinetic study of the mechanism of conversion of α-hydroxyheme to verdoheme while bound to heme oxygenase.2005

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Biochemical Biophysical Research Communication 338-1

      Pages: 578-583

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Neuroprotective mechanism of lidocaine against in vitro ischemic insult of the rat hippocampal CA1 pyramidal neurons.2005

    • Author(s)
      Shuhei Niiyama
    • Journal Title

      Neuroscience 53-3

      Pages: 271-278

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Involvement of NADP(H) in the interaction between heme oxygenase-1 and cytochrome P450 reductase2005

    • Author(s)
      Yuichiro Higashimoto
    • Journal Title

      Journal of Biological Chemistry 280

      Pages: 729-737

    • Related Report
      2005 Annual Research Report 2004 Annual Research Report
  • [Journal Article] A kinetic study of the mechanism of conversion of α-hydroxyheme to verdoheme while bound to heme oxygenase2005

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Biochemical and Biophysical Research Communications 338

      Pages: 578-583

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Neuroprotective mechanisms of lidocaine against in vitro ischemic insult of the rat hippocampal CA1 pyramidal neurons2005

    • Author(s)
      Shuhei.Niiyama
    • Journal Title

      Neuroscience Research 53

      Pages: 271-278

    • Related Report
      2005 Annual Research Report
  • [Journal Article] ヘムオキシゲナーゼの立体構造からみた反応機構2005

    • Author(s)
      坂本 寛
    • Journal Title

      生化学 77巻・7号

      Pages: 634-638

    • NAID

      10016603348

    • Related Report
      2005 Annual Research Report
  • [Journal Article] CO-trapping site in heme oxygenase revealed by photolysis of its CO-bound heme complex : mechanism of escaping from product inhibition2004

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Journal of Molecular Biology 341・1

      Pages: 7-13

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Characterization of rat heme oxygenase-3 gene. Implocation of processed pseudogenes drived from heme oxygenase-2 gene2004

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      GENE 336・2

      Pages: 241-250

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Hydroxyheme and hydrazine bind directly to the heme iron of the heme-heme oxygenase-1 complex2004

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Journal of Inorganic Biochemistry 98・7

      Pages: 1223-1228

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Purification and characterization of human uroporphyrinogen III synthase expressed in Eseherichia coli2004

    • Author(s)
      Yoshiaki Omata
    • Journal Title

      Journal of Biochemistry 136・2

      Pages: 211-220

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] CO-trappimg site in heme oxygenase revealed by photolysis of its CO-bound heme complex : Mechanism of escaping from product inhibition.2004

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Journal of Molecular Biology 341-1

      Pages: 7-13

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Characterization of rat heme oxygenase-3 gene. Implication of processed pseudogenes derived from heme oxygenase-2 gene.2004

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      GENE 336-2

      Pages: 241-250

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Hydrovylamine and hydrazine bind directly to the heme iron of the heme-heme oxygenase-1 complex.2004

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Journal of Inorganic Biochemistry 98-7

      Pages: 1223-1228

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Purification and characterizatin of hyman uroporphyrinogen III synthase expressed in escherichia colil.2004

    • Author(s)
      Yoshiaki Omata
    • Journal Title

      Journal of Biochemistry 136-2

      Pages: 211-220

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Hydroxyheme and hydrazine bind directly to the heme iron of the heme-heme oxygenase-1 complex2004

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Journal of Inorganic Biochemistry 98

      Pages: 1223-1228

    • Related Report
      2004 Annual Research Report
  • [Journal Article] CO-trapping site in heme oxygenase revealed by photolysis of its CO-bound heme complex : mechanism of escaping from product inhibition2004

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Journal of Molecular Biology 341

      Pages: 7-13

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal structures of ferrous and CO-, CN^--, and NO-bound forms of rat heme oxygenase-1 (HO-1) in complex with heme : structural implications for discrimination between CO and O_2 in HO-12003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Biochemistry 42・33

      Pages: 9898-9905

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      The Journal of Biological Chemistry 278・34

      Pages: 32352-32358

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structures of ferrous form and CO-, CN^--, and NO-bound forms of rat heme oxygenase (HO) : implications for discrimination between CO and O_2 in HO2003

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Biomolecular Chemistry

      Pages: 196-197

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Expression and characterization of human bifunctional peptidyiglycine α-amidating monooxygenase2003

    • Author(s)
      Manabu Satani
    • Journal Title

      Protein Expression and. Purification 28・2

      Pages: 293-302

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Purification and characterization of a soluble form of rat liver NADPH-cytochrome P-450 reductase highly expressed in Escherichia coli2003

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      Protein Expression and Purification 29・1

      Pages: 1-7

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of ferrous and CO-, CN^--, and NO-bound forms of rat heme oxygenase-1 (HO-1) in complex, with heme : Structural implication for discrimination between CO and O_2 in HO-1.2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Biochemistry 42-33

      Pages: 9898-9905

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate.2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Journal of Biological Chemistry 278-34

      Pages: 32352-32358

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structures of ferrous form and CO-, CN^--, and NO-bound forms of rat heme oxygenase (HO): implications for discrimination between CO and O_2 in HO.2003

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Biomolecular Chemistry

      Pages: 196-197

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Expression and characterization of human bifunctional peptidylglycine α-amidating monooxygenase.2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Protein Expression and Purification 28-2

      Pages: 293-302

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Purification and characterization of a soluble form of rat liver NADPH-cytochrome P-450 reductase highly expressed in Escherichia coli.2003

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      Protein Expression and Purification 29-1

      Pages: 1-7

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Purification and characterization of a soluble form of rat liver NADPH-cytochrome P-450 reductase highly expressed in Escherichia coli2003

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      Protein Expression and Purification 29

      Pages: 1-7

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      The Journal of Biological Chemistry 278

      Pages: 32352-32358

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal structures of ferrous and CO-, CN^--, and NO-bound forms of rat heme oxygenase-1 (HO-1) in complex with heme : structural implications for discrimination between CO and O_2 in HO-12003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Biochemistry 42

      Pages: 9898-9905

    • Related Report
      2004 Annual Research Report
  • [Book] 基礎医学・生物系の同位体実験-放射性同位体・安定同位体・X線結晶解析の基礎-2005

    • Author(s)
      井上 義浩
    • Total Pages
      120
    • Publisher
      慧文社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Book] Isotope experiments in medical and biological science : basics of radioisotope, stable isotope, and X-ray crystallography2005

    • Author(s)
      Yoshihiro Inoue, Yuichiro Higashimoto, Hiroshi Sakamoto, Koichi Kuwano, Kenichi Takahashi, Masato Noguchi, Keiichi Fukuyama, Masakazu Sugishima
    • Total Pages
      120
    • Publisher
      Keibunsha
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Publications] Hiroshi Sakamoto: "The reactivity of α-hydroxyhaem and verdohaem bound to haem oxygenase-1 to dioxygen and sodium dithionite"European Journal of Biochemistry. 269. 5231-5239 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Manabu Satani: "Expression and characterization of human bifunctional peptidylglycine α-amidating monooxygenase"Protein Expression and Purification. 28. 293-302 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Shunsuke Hayashi: "Purification and characterization of a soluble form of rat liver NADPH-cytochrome P-450 reductase highly expressed in Eseherichia coli"Protein Expression and Purification. 29. 1-7 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate"The Journal of Biological Chemistry. 278. 32352-32358 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal structures of ferrous and CO-, CN^-, and NO-bound forms of rat heme oxygenase-1 (HO-1) in complex with heme : structural implications for discrimination between CO and O_2 in HO-1"Biochemistry. 42. 9898-9905 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hiroshi Sakamoto: "Hydroxyheme and hydrazine bind directly to the heme iron of the heme-heme oxygenase-1 complex"Journal of Inorganic Biochemistry. 発売予定.

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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