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Structural study for the novel regulation mechanism by calcium ion

Research Project

Project/Area Number 15570101
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionYokohama City University

Principal Investigator

SHIMIZU Toshiyuki  Yokohama City University, International Graduate School of Integrated Sciences, Associate Professor (30273858)

Co-Investigator(Kenkyū-buntansha) HASHIMOTO Hiroshi  Yokohama City University, International Graduate School of Integrated Sciences, Research Assistant (40336590)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2004: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2003: ¥2,300,000 (Direct Cost: ¥2,300,000)
KeywordsCBL2 / EF-hand / calcium / X-ray analysis / CIPK / calcineurin / plant / X線結晶構造解析 / EFハンド / カルシウムセンサー
Research Abstract

Calcium signaling mechanisms are widely employed by all eukaryotic organisms to regulate gene expression and a variety of cellular processes. In plants, many extracellular signals, such as light, drought, cold, salinity, stress factors, elicit changes in cellular calcium concentration. The calcium sensor protein often changes its conformation in a calcium-dependent manner and interacts with other signaling proteins to relay the signal. Several families of calcium sensor proteins have been identified in higher plants. Recently, novel calcium sensor proteins with EF-hand motifs from Arabidopsis thaliana have been identified, referred to as AtCBL(Arabidopsis thaliana calcineurin B-like protein). A family of SNF1 has been identified as targets for CBL proteins(7-9).These are serine-threonine protein kinases, referred to as AtCIPK(Arabidopsis thaliana CBL-interacting protein kinase), that form a novel family of proteins found so far only in plants.
The crystal structure of AtCBL2 has been determined at 2.1A resolution. The protein forms a compact a-helical structure with two pairs of EF-hand motifs. The structure is similar in overall folding topology to the structures of calcineurin B and neuronal calcium sensor 1 , but differs significantly in local conformation. The two calcium ions are coordinated in the first and fourth EF-hand motifs, while the second and third EF-hand motifs are maintained in the open form by internal hydrogen bonding without coordination of calcium ions. Both a possible site and a possible mechanism for the target binding to AtCBL2 are discussed based on the three-dimensional structure.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (22 results)

All 2004 2003 Other

All Journal Article (18 results) Patent(Industrial Property Rights) (1 results) Publications (3 results)

  • [Journal Article] Arita, et. al. Structural basis for Ca^<2+>-induced activation of human PAD42004

    • Author(s)
      Arita, et. al.
    • Journal Title

      Nat Struct Mol Biol 11

      Pages: 777-783

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure of the N-terminal domain of PEX1 AAA-ATPase: Characterization of a putative adaptor-binding domain2004

    • Author(s)
      Shiozawa, et. al.
    • Journal Title

      J. Biol. Chem 279

      Pages: 50060-50068

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray crystallographic analyses of EcoO109I and its complex with DNA2004

    • Author(s)
      Imasaki, et. al.
    • Journal Title

      Acta Crystallogr D 60

      Pages: 1165-1166

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallographic characterization of the N-terminal domain of PEX12004

    • Author(s)
      Shiozawa, K., et. al.
    • Journal Title

      Acta Crystallogr D60

      Pages: 2098-2099

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure of the N-terminal domain of PEX1 AAA-ATPase: Characterization of a putative adaptor-binding domain2004

    • Author(s)
      Shiozawa, K., et. al.
    • Journal Title

      J. Biol. Chem 279

      Pages: 50060-50068

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structural basis for Ca^<2+>-induced activation of human PAD42004

    • Author(s)
      Arita, K., et. al.
    • Journal Title

      Nature Struct. Mol. Biol 11

      Pages: 777-783

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray crystallographic analyses of EcoO 109I and its complex with DNA2004

    • Author(s)
      Imasaki, T., et. al.
    • Journal Title

      Acta Crystallogr D60

      Pages: 1165-1166

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structural basis for Ca^<2+>-induced activation of human PAD42004

    • Author(s)
      Arita et al.
    • Journal Title

      Nat Struct Mol Biol 11

      Pages: 777-783

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structure of the N-terminal domain of PEX1 AAA-ATPase : Characterization of a putative adaptor-binding domain2004

    • Author(s)
      Shiozawa et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 50060-50068

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystallization and preliminary X-ray crystallographic analyses of Eco O109I and its complex with DNA2004

    • Author(s)
      Imasaki et al.
    • Journal Title

      Acta Crystallogr D. 60

      Pages: 1165-1166

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystallization and preliminary X-ray characterization of novel caIcium binding protein AtCBL2 from Arabidopsis thaliana2003

    • Author(s)
      Nagae, et. al.
    • Journal Title

      Acta Crystallogr 59

      Pages: 1079-1080

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The Crystal Structure of the Novel Calcium-bindingProtein AtCBL2 from Arabidopsis thaliana2003

    • Author(s)
      Nagae, et. al.
    • Journal Title

      J. Biol. Chem 278

      Pages: 42240-42246

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Parallel coiled-coil association of the RhoA-binding domain in Rho-kinase2003

    • Author(s)
      Shimizu, et. al.
    • Journal Title

      J. Biol. Chem 278

      Pages: 46046-46051

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The Crystal Structure of the Novel Calcium-binding Protein AtCBL2 from Arabidopsis thaliana2003

    • Author(s)
      Nagae, M., et. al.
    • Journal Title

      J. Biol. Chem 278

      Pages: 42240-42246

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray characterization of novel calcium binding protein AtCBL2 from Arabidopsis thaliana2003

    • Author(s)
      Nagae, M., et. al.
    • Journal Title

      Acta Crystallogr D59

      Pages: 1079-1080

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray crystallographic analysis of human peptidylarginine deiminase V2003

    • Author(s)
      Arita, k., et. al.
    • Journal Title

      Acta Crystallogr D59

      Pages: 2332-2333

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Parallel coiled-coil association of the RhoA-binding domain in Rho-kinase2003

    • Author(s)
      Shimizu, T., et. al.
    • Journal Title

      J.Biol.Chem 278

      Pages: 46046-46051

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structural Basis of the Rho GTPase Signaling2003

    • Author(s)
      Hakoshima, T., et. al.
    • Journal Title

      J. Biochem. (Tokyo) 134

      Pages: 327-331

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] カルシニューリンサブユニットB様蛋白質の結晶その製造方法、探索方法2003

    • Inventor(s)
      清水 敏之
    • Industrial Property Rights Holder
      横浜市
    • Industrial Property Number
      2003-305216
    • Filing Date
      2003-09-01
    • Related Report
      2004 Annual Research Report
  • [Publications] Nagae et al.: "Crystallization and preliminary X-ray characterization of novel calcium binding protein AtCBL2 from Arabidopsis thaliana"Acta Crystallogr.. D59. 1079-1080 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nagae et al.: "The Crystal Structure of the Novel Calcium-binding Protein AtCBL2 from Arabidopsis thaliana"J.Biol.Chem.. 278. 42240-42246 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Shimizu et al.: "Parallel coiled-coil association of the RhoA-binding domain in Rho-kinase"J.Biol.Chem.. 278. 46046-46051 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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