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Analyses of structures and reaction mechanisms of biosynthetic enzymes of pyrroloquinoline quinone

Research Project

Project/Area Number 15580064
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionYamaguchi University

Principal Investigator

TOYAMA Hirohide  Yamaguchi University, Biological Chemistry, Associate Professor, 農学部, 助教授 (60240884)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,200,000 (Direct Cost: ¥3,200,000)
Fiscal Year 2004: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2003: ¥2,500,000 (Direct Cost: ¥2,500,000)
Keywordspyrroloquinoline quinone / PQQ / biosynthesis
Research Abstract

Gene cluster involved in biosynthesis of pyrroloquinoline quinone, PQQ, had been determined as pqqABCDEFG. The mutant defected in pqqC produced a biosynthetic intermediate, and it was converted to PQQ in vitro by PqqC protein, which was expressed in Escherichia coli transformant and purified. This intermediate was purified and its structure was confirmed as 3a-(2-amino-2-carboxy-ethyl)-4,5-dioxio-4,5,6,7,8,9-hexahydro-quinone-7,9-dicarboxylic acid. The PqqC enzyme reaction required a protein factor (ActF) plus NADPH to show full enzyme activity, however, dithiothreitol (DTT) itself could be replaced. When mixed with PQQ, PqqC/D, a fusion protein of PqqC and PqqD, was eluted as a complex in gel filtration column chromatography, but separated each other in the presence of DTT. In the case of PqqC, part of the complex remained even in the presence of DTT. DTT has an ability to reduce PQQ, thus PqqC and PqqC/D might bind the oxidized PQQ tightly but not the reduced form so much. Association constant of PqqC or PqqC/D with PQQ was determined by measuring fluorescent quenching of the protein with titration of PQQ. Partially purified ActF showed NADPH oxidase activity in the presence of PQQ. It is suggested that DTT or ActF plus NADPH keeps PQQ in the reduced form and consequently enhances PQQ production by PqqC or PqqC/D in vitro. PqqD might work to lower the affinity of PqqC to the reduced form of PQQ. PqqE was expressed in E.coli and purified in the presence of DTT. When DTT was absent, PqqE seemed easy to be degraded. It is suggested that PqqE contained iron-sulfur cluster according to its absorption spectrum.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (10 results)

All 2004 Other

All Journal Article (9 results) Publications (1 results)

  • [Journal Article] Quinohemoprotein alcohol dehydrogenases : Structure, function and physiology.2004

    • Author(s)
      H.Toyama, F.S.Mathews, O.Adachi, K.Matsushita
    • Journal Title

      Arch.Biochem.Biophys. 428(1)

      Pages: 10-21

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Quinone biogenesis : Structure and mechanism of PqqC, the final catalyst in the production of pyrroloquinoline quinone.2004

    • Author(s)
      O.T.Magnusson, H.Toyama, et al.
    • Journal Title

      Proc.Natl.Acad.Sci.U S A. 101(21)

      Pages: 7913-7918

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] The structure of a biosynthetic intermediate of pyrroloquinoline quinone(POO) and elucidation of the final step of POO biosynthesis.2004

    • Author(s)
      O.T.Magnusson, H.Toyama, et al.
    • Journal Title

      J.Am.Chem.Soc. 126(17)

      Pages: 5342-5343

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Quinate oxidation in Gluconobacter oxydans IFO3244: purification and characterization of quinoprotein quinate dehydrogenase.2004

    • Author(s)
      A.S.Vangnai, H.Toyama, et al.
    • Journal Title

      FEMS Microbiol.Lett. 241(2)

      Pages: 157-162

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Quinone biogenesis : Structure and mechanism of PqqC, the final catalyst in the production of pyrroloquinoline quinone.2004

    • Author(s)
      O.T.Magnusson, H.Toyama, et al.
    • Journal Title

      Proc.Natl.Acad.Sci.USA. 101(21)

      Pages: 7913-7918

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The structure of a biosynthetic intermediate of pyrroloquinoline quinone (PQQ) and elucidation of the final step of PQQ biosynthesis.2004

    • Author(s)
      O.T.Magnusson, H.Toyama, et al.
    • Journal Title

      J.Am.Chem.Soc. 126(17)

      Pages: 5342-5343

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Quinate oxidation in Gluconobacter oxydans IFO3244 : purification and characterization of quinoprotein quinate dehydrogenase.2004

    • Author(s)
      A.S.Vangnai, H.Toyama, et al.
    • Journal Title

      FEMS Microbiol.Lett. 241(2)

      Pages: 157-162

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The structure of a biosynthetic intermediate of pyrroloquinoline quinone (POO) and elucidation of the final step of PQQ biosynthesis.2004

    • Author(s)
      O.T.Magnusson, H.Toyama, et al.
    • Journal Title

      J.Am.Chem.Soc. 126(17)

      Pages: 5342-5343

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Quinate oxidation in Gluconobacter oxydans IF03244 : purification and characterization of quinoprotein quinate dehydrogenase.2004

    • Author(s)
      A.S.Vangnai, H.Toyama, et al.
    • Journal Title

      FEMS Microbiol.Lett. 241(2)

      Pages: 157-162

    • Related Report
      2004 Annual Research Report
  • [Publications] O.Magnusson, et al.: "The structure of a biosynthetic intermediate of pyrroloquinoline quinone (PQQ) and elucidation of the final step of PQQ biosynthesis"Journal of American Chemical Society. (accepted). (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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