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Physiological functions of "aldoxime-nitrile pathway" in microorganisms and the use of enzymes responsible for the pathway to organic synthesis

Research Project

Project/Area Number 15580066
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionFaculty of Engineering, Toyama Prefectural University

Principal Investigator

KATO Yasuo  Toyama Prefectural University, Faculty of Engineering, Associate Professor, 工学部, 助教授 (20254237)

Co-Investigator(Kenkyū-buntansha) ASANO Yasuhisa  Toyama Prefectural University, Faculty of Engineering, Professor, 工学部, 教授 (00222589)
KOMEDA Hidenobu  Toyama Prefectural University, Faculty of Engineering, Assistant Professor, 工学部, 助手 (50285160)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2004: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2003: ¥2,900,000 (Direct Cost: ¥2,900,000)
Keywordsaldoxime dehydratase / nitrile hydratase / nitrilase / Rhodococcus / Bacillus / dehydration / enzyme / screening
Research Abstract

We examined the following experiments in order to clarify 1) reaction mechanism of aldoxime dehydratase (Oxd) and 2) physiological function of "aldoxime-nitrile pathway" in microorganisms:
1. We constructed an overexpression system of nitrilase (Nit)-linked axd gene in a recombinant E. coli and obtained large quantities of Oxd protein (OxdB) in highly pure and homogenous form.
2. We speculated a reaction mechanism of OxdB by analyzing detailed characters and spectrophotometric analysis of the enzyme.
3. We purified several hundreds mg of OxdB from the recombinant E. coli strain grown under optimized conditions at (1) and applied for a preliminary crystallization studies.
4. We screened several strains having Oxd liked with nitrile hydratase (NHase) from our stock cultures and soil samples.
5. We highly purified NHase-linked Oxd (OxdRG) from Rhodococcus globerulus A-4, which has been isolated at (4), and compared its properties with the previously characterized Oxds.
6. We cloned oxd gene from thegenomic library of R. globerulus based on an information of N-terminal amino acid sequence of OxdRG. We clarified that the oxd gene coexisted with genes coding NHase, amidase, and their regulatory proteins and activators at the genome of the strain as to form gene clusters.
7. We cloned oxd gene homologue existing at an upstream of amidase gene of Rhodococcus erythropolis N-771, which had been isolated as NHase producer. We constructed the overexpression system of the Oxd (OxdRE) in the recombinant E. coli and optimized its overexpression system. Under the optimized conditions, the recombinant E. coli was cultivated and OxdRE was purified from the strain, characterized, and compared its properties with the known Oxds.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (17 results)

All 2005 2004 2003 Other

All Journal Article (14 results) Publications (3 results)

  • [Journal Article] Regulation of aldoxime dehydratase activity by redox-dependent change in the coordination structure of the aldoxime-heme complex2005

    • Author(s)
      K.Kobayashi, S.Yoshioka, Y.Kato, Y.Asano, S.Aono
    • Journal Title

      Journal of Biological Chemistry 280

      Pages: 5486-5490

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Regulation of aldoxime dehydratase activity by redox-dependent change in the coordination structure of the aldoxime-heme complex2005

    • Author(s)
      Kobayashi, K., Yoshioka, S,.Kato, Y., Asano, Y., Aono, S.
    • Journal Title

      Journal of Biological Chemistry 280

      Pages: 5486-5490

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Aldoxime dehydratase co-existing with nitrile hydratase and amidase in the iron-type nitrile hydratase-producer Rhodococcus sp.N-7712004

    • Author(s)
      Y.Kato, Y.Yoshida, S.-X.Xie, Y.Asano
    • Journal Title

      Journal of Bioscience and Bioengineering 97

      Pages: 250-259

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure and function of amino acid ammonia-lyases2004

    • Author(s)
      Y.Asano, Y.Kato, C.Levy, P.Baker, D.Rice
    • Journal Title

      Biocatalysis and Biotransformations 22

      Pages: 133-140

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Lipase-mediated desymmetrization of glycerol with aromatic and aliphatic anhydrides2004

    • Author(s)
      D.I.Batovska, S.Tsubota, Y.Kato, Y.Asano, M.Ubukata
    • Journal Title

      Tetraherdon Asymmetry 15

      Pages: 3551-3559

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Aldoxime dehydratase co-existing with nitrile hydratase and amidase in the iron-type nitrile hydratase-producer Rhodococcus sp. N-7712004

    • Author(s)
      Kato, Y., Yoshida, S,.Xie, S.-X., Asano, Y.
    • Journal Title

      Journal of Bioscience and Bioengineering 97

      Pages: 250-259

    • NAID

      110002665293

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure and function of amino acid ammonia-lyases2004

    • Author(s)
      Asano, Y., Kato, Y., Levy, C., Baker P., Rice, D.
    • Journal Title

      Biocatalysis and Biotransformations 22

      Pages: 133-140

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Lipase-mediated desymmetrization of glycerol with aromatic and aliphatic anhydrides2004

    • Author(s)
      Batovska, D.I., Tsubota, S,.Kato, Y., Asano, Y., Ubukata, M.
    • Journal Title

      Tetraherdon Asymmetry 15

      Pages: 3551-3559

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Aldoxime dehydratase co-existing with hydratase and amidase in the iron-type nitrile hydratase-producer Rhodococcus sp.N-7712004

    • Author(s)
      Y.Kato, Y.Yoshida, S.-X.Xie, Y.Asano
    • Journal Title

      Journal of Bioscience and Bioengineering 97

      Pages: 250-259

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Lipase-mediated desymmetrization of glycerol with aromatic and aliphatic anhydrides2004

    • Author(s)
      D.I.Batovska, S.Tsubota, Y.Kato, Y.Asano, M.Ubukata
    • Journal Title

      Tetrahedron Asymmetry 15

      Pages: 3551-3559

    • Related Report
      2004 Annual Research Report
  • [Journal Article] High-level expression of a novel FMN-dependent heme-containing lyase, phenylacet-aldoxime dehydratase of Bacillus sp.strain OxB-1, in heterologous hosts2003

    • Author(s)
      Y.Kato, Y.Asano
    • Journal Title

      Protein Expression and Purification 28

      Pages: 131-139

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A gene cluster responsible for alkylaldoxime metabolism coexisting with nitrile hydratase and amidase in Rhodococcus globerulus A-42003

    • Author(s)
      S.-X.Xie, Y.Kato, H.Komeda, Y.Yoshida, Y.Asano
    • Journal Title

      Biochemistry 42

      Pages: 12056-12066

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] High-level expression of a novel FMN-dependent heme-containing lyase, phenylacetaldoxime dehydratase of Bacillus sp. strain OxB-1, in heterologous hosts2003

    • Author(s)
      Kato, Y., Asano, Y.
    • Journal Title

      Protein Expression and Purification 28

      Pages: 131-139

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A gene cluster responsible for alkylaldoxime metabolism coexisting with nitrile hydratase and amidase in Rhodococcus globerulus A-42003

    • Author(s)
      Xie, S.-X., Kato, Y., Komeda, H., Yoshida, S., Asano, Y.
    • Journal Title

      Biochemistry 42

      Pages: 12056-12066

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Y.Kato, Y.Yoshida, S.-X.Xie, Y.Asano: "Aldoxime dehydratase co-existing with nitrile hydratase and amidase in the iron-type nitrilehydratase-producer Rhodococcus sp.N-771"Journal of Bioscience and Bioengineering. (in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] S.-X.Xie, Y.Kato, H.Komeda, Y.Yoshida, Y.Asano: "A gene cluster responsible for alkylaldoxime metabolism coexisting with nitrile hydratase and amidase in Rhodococcus globerulus A-4"Biochemistry. 42. 12056-12066 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Kato, Y.Asano: "High-level expression of a novel FMN-dependent heme-containing lyase, phenyl-acetaldoxime dehydratase of Bacillus sp.strain OxB-1, in heterologous hosts"Protein Expression and Purification. 28. 131-139 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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