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Development of a rapid and general reaction-oriented method for determining enzyme activity by calorimetry

Research Project

Project/Area Number 15580076
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied biochemistry
Research InstitutionMie University

Principal Investigator

TANAKA Akiyoshi  Mie University, Faculty of Bioresources, Professor, 生物資源学部, 教授 (10155111)

Co-Investigator(Kenkyū-buntansha) KARITA Shuichi  Mie University, Faculty of Bioresources, Associate Professor, 生物資源学部, 助教授 (90233999)
SENOO Keishi  University of Tokyo, Graduate School of Agriculture and Life Sciences, Professor, 大学院・農学生命科学研究科, 教授 (40206652)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2004: ¥1,300,000 (Direct Cost: ¥1,300,000)
Fiscal Year 2003: ¥1,400,000 (Direct Cost: ¥1,400,000)
Keywordsenzyme reaction / kinetic parameter / calorimetry / rapid determination / general method
Research Abstract

We have tried to develop a convenient, general, and precise method for determining the enzyme kinetic parameters such as Michaelis constant and the molecular activity using reaction heat as a probe. For this purpose, we utilized high-sensitivity isothermal titration calorimetry. Two methods, "titration method" and "single-shot method" were employed. For the former case, a substrate concentration increases stepwise by injecting the substrate solution several times with short intervals into the enzyme solution and reaction heat was observed each time. For the latter, an enzyme solution and its substrate solution were mixed only once and the following total reaction is observed.
As model cases, ascorbate oxidase, glucoamylase, and lipase-catalyzed reactions were examined.
Satisfactory results were obtained for the cases of ascorbate oxidase and glucoamylase by the titration method, consisting with the previously reported data, indicating that this method is a promising approach for determining the enzyme kinetic parameters without skilled job. On the other hand, the single-shot method tends to give somewhat smaller k_<cat> and larger K_m values with unknown reason.
For the case of lipase, huge amount of dilution heat was observed when a substrate solution and the enzyme solution were mixed, which masked the enzyme reaction-heat. What is worse, the lipase molecules were adsorbed on the inner surface of the reaction cell of the titration calorimeter tightly, and it was not easy to remove the enzyme from the cell. As a result, the catalytic reaction started simply by filling the calorimeter cell with a substrate solution. This indicates that property of an enzymes as a protein is an important factor for this method.
We are planning to operate the data base of the parameters thus obtained, including reaction heat.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (24 results)

All 2004 2003 Other

All Journal Article (11 results) Book (9 results) Publications (4 results)

  • [Journal Article] Cohesin-dockerin interactions within and between Clostridium josui and Clostridium thermocellum2004

    • Author(s)
      Jindou, S.
    • Journal Title

      J Biol.Chem. 279

      Pages: 9867-9874

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Decontamination of Chlorate in Longan Plantation Soils by Bio-stimulation with Sugar Amendment2004

    • Author(s)
      Pathipan Sutigoolabud
    • Journal Title

      Soil Sci.Plant Nutr. 50

      Pages: 249-256

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Fluorometric Study on the Acid-Induced Denaturation of Staphylococcal Nuclease and Its Mutant Forms2004

    • Author(s)
      Tanaka, A.
    • Journal Title

      Biosci, Biotechnol.Biochem. 68

      Pages: 1293-1298

    • NAID

      10013286635

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Partial characterization of strucuture and function of a d function of a xylanase gene from the rumen hemicellulolytic bacterium Eubacterium rumimantium.2004

    • Author(s)
      Taguchi, H.
    • Journal Title

      Anim.Sci.J 75

      Pages: 325-332

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Cohesin-dockerin interactions within and between Clostridium josui and Clostridium thermocellum2004

    • Author(s)
      Jindou, S. et al.
    • Journal Title

      J.Biol.Chem. 50

      Pages: 249-256

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Partial characterization of strucuture and function of ad function a xylanase gene from the rumen hemicellulolytic bacterium Eubacterium ruminantium2004

    • Author(s)
      Taguchi, H. et al.
    • Journal Title

      Anim.Sci.J. 75

      Pages: 325-332

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Decontamination of Chlorate in Longan Plantation Soils by Bio-stimulation with Sugar Amendment2004

    • Author(s)
      Pathipan Sutigoolabud
    • Journal Title

      Soil Sci.Plant Nutr. 50・2

      Pages: 249-256

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Fluorometric Study on the Acid-Induced Denaturation of Staphylococcal Nuclease and Its Mutant Forms2004

    • Author(s)
      Akiyoshi Tanaka
    • Journal Title

      Biosci.Biotechnol.Biochem. 68・6

      Pages: 1293-1298

    • NAID

      10013286635

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Cloning of the Ruminococcus albus ce15D and ce19A genes encoding dockerin module-containing endoglucanases and expression of 15D in E.coli.2004

    • Author(s)
      Hidenori Taguchi
    • Journal Title

      Biosci.Biotechnol.Biochem. 68・7

      Pages: 1557-1564

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Genetic Diversity of Native Bradyrhizobium Populations in Soybean-Growing Areas of Northern Thailand2003

    • Author(s)
      Shutsrirung, A.
    • Journal Title

      Soil Sci.Plant Nutr. 49

      Pages: 255-265

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Genetic Diversity of Native Bradyrhizobium Populations in Soybean-Growing Areas of Northern Thailand2003

    • Author(s)
      Shutsrirung, A. et al.
    • Journal Title

      Soil Sci.Plant Nutr. 49

      Pages: 255-265

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] 生化学的に重要な熱力学量,『化学便覧基礎編 改訂5版』2004

    • Author(s)
      田中晶善
    • Total Pages
      4
    • Publisher
      丸善
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] 生化学的に重要な熱力学量,『化学便覧基礎編 改訂5版 CD-ROM』2004

    • Author(s)
      田中晶善
    • Publisher
      丸善(CD-ROM)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] 熱測定による酵素の構造と機能の分析,『食品酵素化学の最新技術と応用』2004

    • Author(s)
      田中晶善
    • Total Pages
      8
    • Publisher
      シーエムシー出版
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] Biochemically important thermodynamic properties, Handbook of chemistry-basics, 5th edition.(chapter 10, section 14)2004

    • Author(s)
      Tanaka, A.
    • Total Pages
      4
    • Publisher
      Maruzen
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] Biochemically important thermodynamic properties, Handbook of chemistry-basics, 5th edition-CD-ROM (chapter 10, section 14)2004

    • Author(s)
      Tanaka, A.
    • Publisher
      Maruzen(not applicable)
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] Calorimetric analysis of the structure and function of enzymes, Food enzyme chemistry : its most up-to-date technology and application and perspectives to food proteomics (chapter 6, section 1)2004

    • Author(s)
      A.Tanaka
    • Total Pages
      8
    • Publisher
      CMC Publishing
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] 化学便覧基礎編改訂5版CD-ROM 10章14節 生化学的に重要な熱力学量2004

    • Author(s)
      田中晶善
    • Publisher
      丸善
    • Related Report
      2004 Annual Research Report
  • [Book] Proceedings of Project Seminars In 2002 - 2003 for JSPS-NRCT/DOST/LIPI/VCC Mutual Cooperative Research Program in the Field of Biotechnology2003

    • Author(s)
      Choochad Santasup
    • Total Pages
      4
    • Publisher
      International Center for Biotechnology
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] International Center for Biotechnology Proceedings of Project Seminars In 2002-2003 for JSPS-NRCT/DOST/LIPI/VCC Mutual Cooperative Research Program in the Field of Biotechnology2003

    • Author(s)
      Choochad Santasup et al.
    • Total Pages
      4
    • Publisher
      International Center for Biotechnology
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Sendanari Jindou: "Cohesin-dockerin interactions within and between Clostridium josui and Clostridium thermocellum"J.Biol.Chem.. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Arawan Shutsrirung: "Genetic diversity of native Bradyrhizobium populations in soybean-growing areas of northern Thailand"Soil Sci.Plant Nutr.. 49(2). 255-265 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 田中 晶善: "食品酵素化学の最新技術と応用 分担執筆「熱測定による酵素の構造と機能の分析」"シーエムシー出版. 8 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 田中 晶善: "化学便覧基礎編 分担執筆:第10章14節「生化学的に重要な熱力学量」"丸善. 4 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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