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Molecular mechanism of substrate recognition of the ubiquitin-ligases that recognize sugar chain

Research Project

Project/Area Number 15580085
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied biochemistry
Research InstitutionTOKYO MRTROPOLITAN ORGANIZATION FOR MEDICAL RESEARCH

Principal Investigator

YOSHIDA Yukiko  Tokyo Metropolitan Organization for Medical Research, Tokyo Metropolitan of Medical Science, Researcher, 東京都臨床医学総合研究所, 研究員 (90271543)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2004: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2003: ¥2,300,000 (Direct Cost: ¥2,300,000)
KeywordsN-glycan / Ubiquitin-ligase / Lectin / Endoplasmic reticulum associated degaradation (ERAD)
Research Abstract

In an attempt to find novel biological functions for N-glycans, we screened mouse brain extracts for proteins bound to various sugar probes, and found Fbx2 an F-box protein, binds specifically to proteins attached with N-linked high-mannose type oligosaccharides, and subsequently contributes to ubiquitylation of N-glycosylated proteins. We propose that SCF^<Fbx2> ubiquitylaltes N-glycosylated proteins, which are translocated from the ER to the cytosol by the quality control mechanism. In this study, we found another F-box protein, Fbs6b that recognize N-glycans. Both Fbx2 and Fbx6b interacted with glycoproteins containing high-mannose oligosaccharides, whose protein modification occurs in the ER. X-ray crystallographic and nuclear magnetic resonance (NMR) studies of the substrates-binding domain of Fbx2 revealed that Fbx2 recognized the inner chitobiose of high-mannose oligosaccharides by a small hydrophobic pocket located at the top of the β-barrel. Both Fbx2 and Fbx6b proteins interacted with denatured glycoproteins, which were modified with not only high-mannose but also complex-type oligosaccharides, more efficiently than native proteins. Given that Fbs proteins interact with innermost chitobiose in N-glycans, we propose that Fbs proteins distinguish native from unfolded glycoproteins by sensing the exposed chitobiose structure.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (20 results)

All 2005 2004 2003 Other

All Journal Article (17 results) Publications (3 results)

  • [Journal Article] Glycoprotein-specific ubiquitin-ligases recognize N-glycans in unfolded substrates.2005

    • Author(s)
      Y.Yoshida, et al.
    • Journal Title

      EMBO Reports 6

      Pages: 239-244

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Expression and assay of glycoprotein-specific ubuquitin ligases2005

    • Author(s)
      Y.Yoshida
    • Journal Title

      Methods in Enzymology in press

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] N-glycosylation acts as a targeting signal ro eliminate intracellular glycoporteins2005

    • Author(s)
      Y.YOSHIDA
    • Journal Title

      Nippon Nougei kagaku Kaishi 78

      Pages: 1056-1061

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Glycoprotein-specific ubiquitin-ligases recognize N-glycans in unfolded substrates.2005

    • Author(s)
      Y.YOSHIDA, et al.
    • Journal Title

      EMBO Reports 6

      Pages: 239-244

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Glycoprotein-specific ubiquitin-ligases recognize N-glycans in unfolded substrates.2005

    • Author(s)
      Y.Yoshida, et al.
    • Journal Title

      EMBO Reports 3

      Pages: 239-244

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Expression and assay of glycoprotein-specific ubuquitin ligases2005

    • Author(s)
      Y.Yoshida
    • Journal Title

      Methods in Enzymology (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structural basis of sugar-recognizing ubiquitin ligase.2004

    • Author(s)
      T.Mizushima, et al.
    • Journal Title

      Nature Struct. Mol. Biol 11

      Pages: 365-370

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] タンパク質分解シグナルとしての糖鎖機能の発見2004

    • Author(s)
      吉田 雪子
    • Journal Title

      日本農芸化学会誌 78

      Pages: 1056-1061

    • NAID

      10013775724

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Structural basis of sugar-recognizing ubiquitin ligase.2004

    • Author(s)
      T.MIZUSHIMA, et al.
    • Journal Title

      Nature Struct.Mol.Biol 11

      Pages: 365-370

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structural basis of sugar-recognizing ubiquitin ligase.2004

    • Author(s)
      T.Mizushima, et al.
    • Journal Title

      Nature Struct.Mol.Biol 11

      Pages: 365-370

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 小胞体関連タンパク質分解2004

    • Author(s)
      吉田 雪子
    • Journal Title

      実験医学 増刊 22

      Pages: 155-162

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 糖鎖認識ユビキチンリガーゼ2004

    • Author(s)
      吉田 雪子
    • Journal Title

      蛋白質核酸酵素増刊 49

      Pages: 1040-1042

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains.2003

    • Author(s)
      Y.Yoshida, et al.
    • Journal Title

      J. Biol. Chem. 278

      Pages: 43877-43884

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A novel role for N-glycans in the ERAD system.2003

    • Author(s)
      Y.Yoshida
    • Journal Title

      J. Biochem. 134

      Pages: 183-190

    • NAID

      10012056621

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains.2003

    • Author(s)
      Y.YOSHIDA, et al.
    • Journal Title

      J.Biol.Chem. 278

      Pages: 43887-43884

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A novel role for N-glycans in the ERAD system.2003

    • Author(s)
      Y.YOSHIDA
    • Journal Title

      J.Biochem. 134

      Pages: 183-190

    • NAID

      10012056621

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Expression and assay of glycoprotein-specific ubuquitin ligases.

    • Author(s)
      Y.YOSHIDA
    • Journal Title

      Methods in Enzymology (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Y.Yoshida, et al.: "Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains"J.Biol.Chem.. 278. 43877-43884 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Yoshida: "A novel role for N-glycans in the ERAD system."J.Biochem.. 134. 183-190 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Mizushima, et al.: "Structural basis of sugar-recognizing ubiquitin ligase."Nature Struct.Mol.Biol. in press.

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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