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Structural analysis on the ligand specificity of γ-glutamylcysteine synthetase

Research Project

Project/Area Number 15580095
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionFukui Prefectural University

Principal Investigator

ODA Jun'ichi  the Graduate School of Fukui Prefectural University, Division of Bioscience, Professor, 生物資源学研究科, 教授 (50027041)

Co-Investigator(Kenkyū-buntansha) HIBI Takao  Fukui Prefectural University, Dept of Bioscience, Associate Professor, 生物資源学部, 講師 (00285181)
KUROKAWA Yoichi  Fukui Prefedural University, Dept of Bioscience, Assistant Professor, 生物資源学部, 助手 (40326088)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2004: ¥600,000 (Direct Cost: ¥600,000)
Fiscal Year 2003: ¥2,700,000 (Direct Cost: ¥2,700,000)
Keywordsglutathione / inhibitor / structural-based drug design / conformational change / substrate recognition / transition-state analogue / 酸化ストレス / 酵素反応機構 / 基質特異性
Research Abstract

γ-Glutamylcysteine synthetase (γGCS), a rate-limiting enzyme in glutathione biosynthesis, plays a central role in glutathione homeostasis and is a target for development of potential therapeutic agents against parasites and cancer.
We have determined the crystal structures of E. coli γGCS complexed with a sulfoximine-based transition-state analog inhibitor and a classical inhibitor, buthionine sulfoximine (BSO), at resolutions of 2.1 and 2.3 A, respectively. The cysteine-binding site was identified; it is formed inductively at the transition state. In the unliganded structure, an openspace exists around the representative cysteine-binding site and is probably responsible for the competitive binding of glutathione. Upon binding of the transition-state analog, the side chains of Tyr-241 and Tyr-300 turn, forming a hydrogen-bonding triad with the carboxyl group of the inhibitors cysteine moiety, allowing this moiety to fit tightly into the cysteine-binding site with concomitant accommodation of its side chain into a shallow pocket. This movement is caused by a conformational change of a switch loop (residues 240-249). The side chain of Tyr-300 gives no electron density peak in the complex with BSO that has no carboxyl group essential to the formation of the hydrogen-bonding triad.
Based on this crystal structure, the cysteine-binding sites of mammalian and parasitic γGCSs were predicted by multiple sequence alignment, although no significant sequence identity exists between the E. coli γGCS and its eukaryotic homologues. The identification of this cysteine-binding site provides important information for the rational design of novel γGCS inhibitors.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (14 results)

All 2004 2003 Other

All Journal Article (8 results) Patent(Industrial Property Rights) (2 results) Publications (4 results)

  • [Journal Article] Crystal Structure of γ-Gltutamylcysteine Synthetase : Insights into the Mechanism of Catalysis by a Key Enzyme for Glutathione Homeostasis.2004

    • Author(s)
      T.Hibi et al.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 101(42)

      Pages: 15052-15057

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Experimental setup for crystallization of Escherichia coli B g-glutamylcysteine synthetase in microgravity.2004

    • Author(s)
      H.Nii et al.
    • Journal Title

      J.Jpn.Soc.Microgravity 21

      Pages: 63-67

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Purification, crystallization and preliminary X-ray diffraction studies on pyruvate phosphate dikinase from maize.2004

    • Author(s)
      T.Nakanishi et al.
    • Journal Title

      Acta Cryst. D60

      Pages: 193-194

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal Structure of γ-Gltutamylcysteine Synthetase: Insights into the Mechanism of Catalysis by a Key Enzyme for Glutathione Homeostasis2004

    • Author(s)
      Hibi, T. et al.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 101

      Pages: 15052-15057

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Experimental setup for crystallization of Escherichia coli B γ-glutamylcysteine synthetase in microgravity2004

    • Author(s)
      Hibi, T. et al.
    • Journal Title

      J. Jpn. Soc. Mcrogravity 21

      Pages: 63-67

    • NAID

      10012049806

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Purification, crystallization and preliminary X-ray diffraction studies on pyruvate phosphate dikinase from maize2004

    • Author(s)
      Nakanishi, et al.
    • Journal Title

      Acta Cryst. D 60

      Pages: 193-194

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Capturing enzyme structure prior to reaction initiation : tropinone reductase-II-substrate complexes.2003

    • Author(s)
      A.Yamashita et al.
    • Journal Title

      Biochemistry 42(19)

      Pages: 5566-5573

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Capturing enzyme structure prior to reaction initiation: tropinone reductase-II-substrate complexes2003

    • Author(s)
      Yamashita, A. et al.
    • Journal Title

      Biochemistry. 42

      Pages: 5566-5573

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] γ-グルタミルシステイン合成酵素の阻害剤のスクリーニン2004

    • Inventor(s)
      小田順一, 日び隆雄
    • Industrial Property Rights Holder
      福井県
    • Industrial Property Number
      2004-074136
    • Filing Date
      2004-03-16
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] γ-グルタミルシステイン合成酵素の阻害剤のスクリーニング方法2004

    • Inventor(s)
      小田 順一, 日び 隆雄
    • Industrial Property Rights Holder
      福井県
    • Industrial Property Number
      2004-074136
    • Filing Date
      2004-03-16
    • Related Report
      2004 Annual Research Report
  • [Publications] A.Yamashita et al.: "Capturing enzyme structure prior to reaction initiation : tropinone reductase-II-substrate complexes"Biochemistry. 42(19). 5566-5573 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Hibi et al.: "Crystal structure of glutamate-cysteine ligase from Escherihia coil B with substrates"Broom 2003 International Crystallography Meetings. 272 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Nii et al.: "Experimental setup for crystallization of Escherichia coli B g-glutamylcystein synthetase in microgravity"J.Jpn.Soc.Microgravity. 21. 63-67 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Nakanishi et al.: "Purification, crystallization and preliminary X-ray diffraction studies on pyrvate phosphate dikinase from maize"Acta Cryst. D60. 193-194 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2025-11-20  

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