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A structure scientific study about interaction of polyamine and left-handed DNA.

Research Project

Project/Area Number 15590051
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionOsaka University of Pharmaceutical Sciences

Principal Investigator

OHISHI Hirofumi  Osaka University of Pharmaceutical Sciences, Associate Professor, 薬学部, 講師 (00211095)

Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 2005: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2004: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2003: ¥1,300,000 (Direct Cost: ¥1,300,000)
KeywordsX-ray crystallography / Z-DNA / B-Z junction / B-Z transfer / minor groove / groove binder / B-Z combination crystal / minor groove cavity / DNA / ポリアミン / モノアミン / コンフォメーション / 左巻きDNA / Z-型DNA / B-Z転移 / ポリアミンナノワイアー / 相互作用 / 結晶構造解析 / 三重螺旋 / 転写 / 高塩濃度 / スーパコイル
Research Abstract

I understood that N1-(2-(2-aminoethylamino)ethyl)ethane-1,2-diamine PA (222) and N1-(2-(2-(2-aminoethylamino)ethylamino)ethyl)ethane-1,2-diamine PA (2222) were easy to be connected in a minor groove of Z-DNA very much and stabilized Z-DNA as a minor groove binder very much. Furthermore, I crystallize at 4 degrees Celsius, 10 degrees Celsius, 20 degrees Celsius by the high salt density with these 11 kinds of polyamine and d(CG)3 as a complex and give the salt density at 20 degrees Celsius very much and crystallize. I examine a role for Z-DNA of polyamine, stabilization action in detail by examining these. I perform crystallization of a long chain of Z-DNA which it has been said to that the above-mentioned crystallization vs. eight bases is difficult till now if I understand stabilization mechanism. I think to clarify structure of DNA such as mixture type d(CGCGCGCGCGAATTCGCGCGCGCG)2, d(CGCGCGCGAATTCGCGCGCG)2 and d(CGCGCGAATTCGCGCG)2 of B type DNA and Z type DNA to clarify B-Z transfer m … More echanism, Z-B transfer mechanism. As for the structure of DNA of B-Z mixture type, crystallization is tried all over the world till now, but there is not a report besides an example of our crystallization. I think about letting we bury a cavity of the big minor groove that it is it in an element of destabilization with this polyamine with the polyamine which is a minor groove binder as DNA and a complex of these long chains and stabilize structure of the whole DNA. Therefore we succeed in X-ray crystallographic analysis of left-handed DNA of a long chain. As for the structure of DNA of B-Z mixture type, crystallization is tried all over the world till now, but there is not a report besides an example of our crystallization. The groove binder polyamine which it is crawled, and I discovered is connected in a minor groove of just Z-DNA and I bury a big minor groove and stabilize structure of the whole DNA. I apply this and perform crystallization of DNA of a long chain, crystallization of B-Z-B junction structure. I think that I bring big development in structured study of DNA if I have already succeeded in crystallization of the DNA which is the longest in the world with this method now, and structure or B-Z-B junction structure of DNA of a long chain are clarified in sequence Less

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (20 results)

All 2006 2005 2004 Other

All Journal Article (15 results) Publications (5 results)

  • [Journal Article] Intermolecular association model of antifungal polyene macrolide via concerted =C-H… O interactions : X-ray crystal structure analysis and ab initio molecular-orbital calculations of chainin.2006

    • Author(s)
      In, Yasuko, Ohishi, Hirofumi, Miyagawa, Hiroo, Kitamura, Kunihiro, Igarashi, Yasuhiro, Ishida, Toshimasa.
    • Journal Title

      Bulletin of the Chemical Society of Japan 79

      Pages: 126-133

    • NAID

      10017170346

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Synthesis and properties of 2'-0,4'-C-methylene-oxy-methylene bridged nucleic acid.2006

    • Author(s)
      Hari, Yoshiyuki, Obika, Satoshi, Ohnishi, Ryo, Eguchi, Ken, Osaki, Tomohisa, Ohishi, Hirofumi, Imanishi, Takeshi
    • Journal Title

      Bioorganic & Medicinal Chemistry 14

      Pages: 1029-1038

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Antineoplastic Agents. 551. Isolation and Structures of Bauhiniastatins 1-4 from Bauhinia purpurea.2006

    • Author(s)
      Pettit, George R., Numata, Atsushi, Iwamoto, Chika, Usami, Yoshihide, Yamada, Takeshi, Ohishi, Hirofumi, Cragg, Gordon M
    • Journal Title

      Journal of Natural Products 69

      Pages: 323-327

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 計算機科学を用いたDNAの創薬化学2006

    • Author(s)
      大石宏文
    • Journal Title

      生産と技術 印刷中

    • NAID

      40007273215

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Synthesis and properties of 2'-O,4'-C-methylene-oxy-methylene bridged nucleic acid.2006

    • Author(s)
      Hari, Yoshiyuki, Obika, Satoshi, Ohnishi, Ryo, Eguchi, Ken, Osaki, Tomohisa, Ohishi, Hirofumi, Imanishi, Takeshi
    • Journal Title

      Bioorganic & Medicinal Chemistry 14

      Pages: 1029-1038

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 計算機科学を用いたDNAの創薬化学2006

    • Author(s)
      大石宏文
    • Journal Title

      生産と技術 (印刷中)

    • NAID

      40007273215

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Intermolecular association model of antifungal polyene macrolide via concerted =C-H... O interaction : X-ray crystal structure analysis and ab initio molecular-orbital calculations of chainin.2006

    • Author(s)
      In, Yasuko, Ohishi, Hirofumi, Miyagawa, Hiroo, Kitamura, Kunihiro, Igarashi, Yasuhiro, Ishida, Toshimasa.
    • Journal Title

      Bulletin of the Chemical Society of Japan 79

      Pages: 126-133

    • NAID

      10017170346

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Synthesis and properties of 2'-O,4'-C-methylene-oxy-methylene bridged nucleic acid.2006

    • Author(s)
      Hari, Yoshiyuki, Obika, Satoshi, Ohnishi, Ryo, Eguchi, Ken, Osaki, Tomohisa, Ohishi, Hirofumi, Imanishi, Takeshi.
    • Journal Title

      Bioorganic & Medicinal Chemistry 14

      Pages: 1029-1038

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Antineoplastic Agents. 551. Isolation and Structures of Bauhiniastatins 1-4 from Bauhinia purpurea.2006

    • Author(s)
      Pettit, George R., Numata, Atsushi, Iwamoto, Chika, Usami, Yoshihide, Yamada, Takeshi, Ohishi, Hirofumi, Cragg, Gordon M.
    • Journal Title

      Journal of Natural Products 69

      Pages: 323-327

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The development of crystallization and X-ray crystallographyh method of long stem DNA2005

    • Author(s)
      Hirofumi Ohishi, Koji Tsukamoto, Mamiko Odoko, Kazimierz Grzeskowiak, Naoyoshi Maezaki, Nobuo Okabe, Tetsuaki Tanaka, Toshimasa Ishida
    • Journal Title

      Nucleic Acids Research Supplement

      Pages: 67-68

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Stabilization of the left-handed Z-DNA with monoamines and polyamines2005

    • Author(s)
      Koji Tsukamoto, Mamiko Odoko, Hirofumi Ohishi, Yoichi Hiyama, Naoyoshi Maezaki, Nobuo Okabe, Tetsuaki Tanaka, Toshimasa Ishida
    • Journal Title

      Nucleic Acids Research Supplement

      Pages: 251-252

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The development of crystallization and X-ray crystallography method of long stem DNA2005

    • Author(s)
      Hirofumi Ohishi, Koji Tsukamoto, Mamiko Odoko, Kazimierz Rzeskowiak, Naoyoshi Maezaki, Nobuo Okabe, Tetsuaki Tanaka, Toshimasa Ishida
    • Journal Title

      Nucleic Acids Research Supplement

      Pages: 67-68

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Asymmetric Intramolecular Michael Addition of α-Sulfinyl Vinylic Carbanion to Enoates.2004

    • Author(s)
      Maezaki, Naoyoshi, Sawamoto, Hiroaki, Yuyama, Sachiko, Yoshigami, Ryoko, Suzuki, Tomoko, Izumi, Mayuko, Ohishi, Hirofumi, Tanaka, Tetsuaki.
    • Journal Title

      Journal of Organic Chemistry 69

      Pages: 6335-6340

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Berberine/γ-cyclodextrin inclusion structure studied by 1H-NMR spectroscopy and molecular-dynamics calculations.2004

    • Author(s)
      Kamigauchi, Miyoko, Kanbara, Narumi, Sugiura, Makiko, Iwasa, Kinuko, Ohishi, Hirofumi, Ishida, Toshimasa.
    • Journal Title

      Helvetica Chimica Acta 87

      Pages: 264-271

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The X-ray crystallographic study of the conformation of Z-DNA which bound to polyamine for the minor groove at room temperature and low temperature2004

    • Author(s)
      Hirofumi Ohishi, Toshimasa Ishida, Kenji Suzuki, Kazimierz Grzeskowiak, Mamiko Odoko, Nobuo Okabe
    • Journal Title

      Nucleic Acids Research S2

      Pages: 256-257

    • Related Report
      2004 Annual Research Report
  • [Publications] Kamigauchi, Miyoko: "Berberine/γ-cyclodextrin inclusion structure studied by 1H -NMR spectroscopy and molecular-dynamics calculations."Helvetica Chimica Acta. 87(1). 264-271 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Maezaki, Naoyoshi: "Synthesis of chiral vinylic sulfoxides by Pd -catalyzed asymmet ric sulfinylzincation"Tetrahedron. 59(50). 9895-9906 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] In, Yasuko: "Concerted Interaction between conjugate d double bond CHs and multiplo OHs in polyene macrollde antiblotic chainin : weak : C-H・・・O interactions responsible for Intrinsic molecular assembly"Chemical Communications. 14. 1692-1693 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Harusawa, Shinya: "Synthesis of (±)-trans- or cis-(5-aminomethyltetrahydrofuranyl)imidazole by Mitsunobu cyclization : Synthetic studies toward novel histamine H3 or H4 -ligands"Chemical & Pharmaceutical Bulletin. 51(3). 325-329 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kamigauchi, Miyoko: "Difference between enzymatic and chemical N -methylations of protoberberine -type alkaloid, dependent on the stereoisomer of (-)-N-methyl-7,8,13,13a-tetrahydroberberinium salt"Bulletin of the Chemical Society of Japan. 76(3). 587-593 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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