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Study on synthesis of biologically active compounds based on modification of biological phosphates

Research Project

Project/Area Number 15590101
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionTokyo University of Pharmacy and Life Science

Principal Investigator

YOKOMATSU Tsutomu  Tokyo University of Pharmacy and Life Science, School of Pharmacy, Professor, 薬学部, 教授 (70158369)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2004: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2003: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywordspurine nucleoside phosphorylase / sphingomyelinase / inhibitors / nucleotide analogues / N-palmitoylsphingosine-1-phosphate / short-chain analogues / adenosine bisphosphates / N-glycosylation / イノシトールアナログ / P2Y1受容体拮抗剤 / MRS 2179 / プリンヌクレオシドホスホリラーゼ / スフィンゴミエリナーゼ / 酵素阻害剤
Research Abstract

1)The binary complex of the trimeric calf spleen phosphorylase, which is highly homologous to human purine nucleoside phosphorylase(PNP), with the potent ground state analogue inhibitor 9-(5,5-difuoro-5-phosphonopentyl)guanine (DFPP-G) was crystallized in the cubic space group P2_13. The crystal structure confirms that DFPP-G acts as a multi-substrate analogue inhibitor as it binds to both nucleoside-and phosphate-binding sites. The analysis also indicates that the linker connecting a purine and difluoromethylenephosphonic acid moiety is surrounded by hydrophobic amino acid residues (Ala 116 and Phe 159) of PNP. On the basis of these findings, DFPP-G and its hypoxanthine analogue(DFPP-H) were modified by introducing a methyl group to all possible positions of the linker to evaluate the hydrophobic effects of the methyl group on the binding affinity to PNP. The methyl group on the linker affected the inhibition in a positional-dependent manner.
2)A series of short-chain analogues of N-pa … More lmitoylsphingosine-1-phosphate, modified by replacement of the phosphate and the long alkenyl side chain with hydrolytically stable difluoromethylene phosphonate and phenyl, respectively, were prepared to study the structure-activity relationship for inhibition of sphingomyelinase(SMase). The study revealed that inhibition is highly dependent upon the stereochemistry of the asymmetric centers of the acylamino moiety, and resulted in identification of a non-competitive inhibitor with the same level of inhibitory activity of schyphostatin, the most potent of the few known small molecular inhibitors of N-SMase. Our SMase inhibitor inhibited the enhanced N-SMase activity in the serium/gulucose-deprived PC-12 cells, and DNA fragmentation in the nuclei. Administration of the inhibitor to mice whose middle cerebral arteries were occluded reduced significantly the size of the cerebral infarcts, compared the control mice.
3)In addition of the above results, we examined modification of adenosine bisphosphates and inositol phosphates by replacement of the phosphate group with a difluoromethylene phosphoninc acid. During the synthesis of the target molecule, we have developed a highly-selective β-glycosylation reaction of 2,3-dideoxyfuranosies having diethoxyphosphoryldifluoromethyl functionality at 3α-position and a facile method for introducing a difluoromethylenephosphonate unit to the allylic position within a cyclic array in a stereo-and regioselective manner. Less

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (18 results)

All 2005 2004 2003 Other

All Journal Article (12 results) Publications (6 results)

  • [Journal Article] Improved Synthesis of 1,3-Propanediol Derivatives having a Diethoxyphosphoryldifluoroethyl Functional Group at the 2-Position. Application to Chemo-enzymatic-----2005

    • Author(s)
      T.Murano, H.Kobayakawa, Y.Yuasa, T.Yokomatsu, S.Shibuya
    • Journal Title

      Synthesis

      Pages: 187-192

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Improved synthesis of 1,3-propanediol derivatives having a diethoxyphosphoryldifluoroethyl functional group at the 2-position. Application to chemo-enzymatic synthesis of novel acyclic nucleotide analogues of adenosine bisphosphates.2005

    • Author(s)
      T.Murano, H.Kobayakawa, Y.Yuasa, T.Yokomatsu, S.Shibuya
    • Journal Title

      Synthesis

      Pages: 187-192

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Improved Synthesis of 1,3-Propanediol Derivatives having a Diethoxyphosphoryldifluoroethyl Functional Group at the 2-Position. Application to Chemo-enzymatic Synthesis of Novel Acyclic Nucleotide Analogues of Adenosine Bisphosphates2005

    • Author(s)
      T.Murano, H.Kobayakawa, Y.Yuasa, T.Yokomatsu, S.Shibuya
    • Journal Title

      Synthesis

      Pages: 187-192

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Inhibition of Sphingomyelinase Activity Helps to Prevent Neuron Death Caused by Isehemic Stress2004

    • Author(s)
      S.Soeda, T.Yokomatsu, et al.
    • Journal Title

      Neurochem.Int. 45

      Pages: 619-626

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Calf Spleen Purine-nucleoside Phosphorylase : Crystal Structure of the Binary Complex with a Potent Multi Substrate Analogue Inhibitor2004

    • Author(s)
      M.Luic, G.Koellner, T.Yokomatsu, S.Shibuya, A.Bzowska
    • Journal Title

      Acta Cryst. D60

      Pages: 1417-1424

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Calf spleen purine-nucleoside phosphorylase : crystal structure of the binary complex with a potent multisubstrate analogue inhibitor.2004

    • Author(s)
      M.Luic, G.Koellner, T.Yokomatsu, S.Shibuya, A.Bzowska
    • Journal Title

      Acta Cryst., D 60

      Pages: 1417-1424

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Inhibition of sphingomyelinase activity enables to prevent ischemic stress-induced death of neurons.2004

    • Author(s)
      S.Soeda, Y.Tsuji, T.Ochiai, K.Mishima, K.Iwasaki, M.Fujiwara, T.Yokomatsu, T.Murano, S.Shibuya, H.Shimeno
    • Journal Title

      Neurochem.Int. 45

      Pages: 619-626

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Inhibition of Sphingomyelinase Activity Helps to Prevent Neuron Death Caused by Ischemic Stress2004

    • Author(s)
      S.Soeda, T.Yokomatsu, et al.
    • Journal Title

      Neurochem.Int. 45

      Pages: 619-626

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Stereoselective synthesis of highly-functionalized cyclohexene derivatives having a diethoxyphsphoryldifluoromethyl functionality from cyclohex-2-enyl-1-phosphates.2003

    • Author(s)
      T.Yokomatsu, J.Kato, C.Sakuma, S.Shibuya
    • Journal Title

      Synlett

      Pages: 1407-1410

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis of non-competitive inhibitors of sphingomyelinases with significant activity.2003

    • Author(s)
      T.Yokomatsu, T.Murano, T.Akiyama, J.Koizumi, S.Shibuya, Y.Tsuji, S.Soeda, H.Shimeno
    • Journal Title

      Bioorg.Med.Chem.Lett. 13

      Pages: 229-236

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] N-Glycosylation of 2,3-dideoxyfuranose derivatives having a (diethoxyphosphorothioyl) difluoromethyl group at the 3α-position.2003

    • Author(s)
      T.Murano, Y.Yuasa, S.Muroyama, T.Yokomatsu, S.Shibuya
    • Journal Title

      Tetrahedron 59

      Pages: 9059-9073

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Synthesis of acyclic nucleotide analogues possessing a difluoromethylene phosphonyl group at the side chain.2003

    • Author(s)
      T.Murano, Y.Yuasa, H.Kobayakawa, T.Yokomatsu, S.Shibuya
    • Journal Title

      Tetrahedron 59

      Pages: 10223-10230

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] T.Yokomatsu, J.Kato, C.Sakuma, S.Shibuya: "Stereoselective Synthesis of Highly-Functionalized Cyclohexene Derivatives Having a Diethoxyphosphoryldifluoromethyl Functionality from Cyclohex-2-enyl-1-phosphates"Synlett. 1407-1410 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Murano, Y.Yuasa, S.Muroyama, T.Yokomatsu, S.Shibuya: "N-Glycosylation of 2,3-Dideoxyfuranose Derivatives having a (Diethoxyphosphorothioyl) difluoromethyl Group at the 3α-Position"Tetrahedron. 59/46. 9059-9073 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Murano, Y.Yuasa, S.H.Kobayakawa, T.Yokomatsu, S.Shibuya: "Synthesis of Acyclic Nucleotide Analogues Possessing Difluoromethylene Phosphonyl Group at the Side Chain"Tetrahedron. 59/51. 10223-10230 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Murano, H.Takechi, Y.Yuasa, T.Yokomatsu et al.: "The Difluoromethylenephosphonothioic Acid Group as a Phosphate Surrogate for Obtaining PTP-1B Inhibitors. Transformation of Difluoromethylenephosphonic Acids into Difluoromethylenephosphonothioic Acids"Arkivoc part (viii), http://www.arkat-usa.org/ark/journal/2003/Fukumoto/KF-840H/KF-840H.pdf. 256-266 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.Iwanow, M.Magnowska, T.Yokomatsu, S.Shibuya, A.Bzowska: "Interactions of Potent Multisubstrate Analogue Inhibitors with Purine Nucleoside Phosphorylase from Calf Spleen - Kinetic and Spectrofluorimeric Studies"Nucleosides, Nucleotides & Nucleic Acids. 22/5-8. 1567-1570 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] S.Koyanagi, M.Kuga, S.Soeda, Y.Hosoda, T.Yokomatsu, et al.: "Elevation of De Novo Ceramide Synthesis in Tumor Masses and the Role of Microsomal Dihydroceramide Synthase"International Journal of Cancer. 105/1. 1-6 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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