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Studies of heme degradation mechanism by heme oxygenase based on the crystal structures.

Research Project

Project/Area Number 15590260
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field General medical chemistry
Research InstitutionKurume University school of Medicine

Principal Investigator

NOGUCHI Masato  Kurume University school of medicine, Dept.Med.Biochem., Professor, 医学部, 教授 (10124611)

Co-Investigator(Kenkyū-buntansha) HIGASHIMOTO Yuichiro  Kurume University school of medicine, Dept.Med.Biochem., Lecturer, 医学部, 講師 (40352124)
SAKAMOTO Hiroshi  Kyushu Institute. of Technology, Dept.Bioscience and Bioinformatics, Associate Professor, 情報工学部, 助教授 (70309748)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥2,900,000 (Direct Cost: ¥2,900,000)
Fiscal Year 2005: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 2004: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2003: ¥1,100,000 (Direct Cost: ¥1,100,000)
Keywordsheme Oxygenase / heme degradation / α-hydroxyheme / verdoheme / biliverdin / crystallography / structural biology / 蛋白質 / 酵素 / 有機化学 / 生体分子
Research Abstract

Heme oxygenase-1(HO-1)catalyzes the physiological degradation of heme at the expense of molecular oxygen using electrons donated by NADPH-cytochrome P450 reductase(CPR). We obtained the results(1)-(3)in this project. (1)we investigated the effect of NADP(H)on the interaction of HO-1 with CPR by surface plasmon resonance and analyzed by computer modeling of the HO-1/CPR complex. The guanidino group of Arg-185 is located within the hydrogen bonding distance of 2'-phosphate of NADPH, suggesting that Arg-185 contributes to the binding to CPR through an electrostatic interaction with the phosphate group. On the other hand, Lys-149 is close to a cluster of acidic amino acids near the FMN binding site of CPR. Thus, Lys-149 and Lys-153 appear to interact with CPR in such a way as to orient the redox partners for optimal electron transfer from FMN of CPR to heme of HO-1. (2)To investigate the electron transfer pathway from CPR, we examined the heme degradation by rat HO-1(rHO-1)using rat FMN-de … More pleted CPR. The FMN-depleted CPR was prepared by dialyzing the CPR mutant, Y140A/Y178A, against 2 M KBr. The first electron to reduce the ferric heme iron to the ferrous state must be supplied from FMN of CPR. The electrons for conversion of verdoheme to ferric biliverdin-iron chelate can be supplied from FAD or NADPH via heme propionates, and that the final electron to reduce ferric biliverdin, leading to the release of ferrous iron and biliverdin, should be provided from FMN of CPR. (3)O_2-dependent reactions of the ferric and ferrous forms of α-hydroxyheme complexed with water-soluble rat heme oxygenase-1 were examined by rapid-scan stopped-flow measurements. Ferric α-hydroxyheme reacted with O_2 to form ferric verdoheme with an O_2-dependent rate constant of 4x10^5 M^<-1>s^<-1> at pH 7.4 and 9.0. A decrease of the rate constant to 2.8x10^5 M^<-1>s^<-1> at pH 6.5 indicates that the reaction proceeds by direct attack of O_2 on the p-neutral radical form of α-hydroxyheme, which is generated by deprotonation of the α-hydroxy group. The reaction of ferrous α-hydroxyheme with O_2 yielded ferrous verdoheme in a biphasic fashion involving a new intermediate having absorption maxima at 415 and 815 nm. The rate constants for this two-step reaction were 68 and 145 s^<-1>. These results show that conversion of α-hydroxyheme to verdoheme is much faster than the reduction of coordinated iron(<1 s^<-1>)under physiological conditions suggesting that, in vivo, the conversion of ferric α-hydroxyheme to ferric verdoheme precedes the reduction of ferric α-hydroxyheme. Less

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (46 results)

All 2005 2004 2003 Other

All Journal Article (34 results) Book (5 results) Publications (7 results)

  • [Journal Article] Neuroprotective mechanisms of lidocaine against in vitro ischemic insult of the rat hippocampal CAI pyramidal neurons.2005

    • Author(s)
      Niiyama S.
    • Journal Title

      Neurosci Res. 53・3

      Pages: 271-8

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A kinetic study of the mechanism of conversion oh a-hydroxheme to verdoheme while bound to heme oxygenase.2005

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Biochem.Biophys.Res.Commun. 338

      Pages: 578-83

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Heme oxygenase and hme degradation2005

    • Author(s)
      Goro Kikuchi
    • Journal Title

      Biochem.Biophys.Commun 338

      Pages: 558-67

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ヒトペプチドC末端アミド化酵素-2頭酵素として発現システムの検討および精製酵素の性質-2005

    • Author(s)
      原田沙織
    • Journal Title

      久留米医学会雑誌 68・7

      Pages: 187-200

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ヘムオキシゲナーゼの立体構造からみた反応機構2005

    • Author(s)
      坂本 寛
    • Journal Title

      生化学 みにれびゅー 77・7

      Pages: 634-8

    • NAID

      10016603348

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Involvement of NADP(H)in the interaction between heme oxygenasel and cytochrome P450 reductase.2005

    • Author(s)
      Yuichiro Higashimoto
    • Journal Title

      J.Biol>Chem. 280・1

      Pages: 729-37

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Neuroprotective mechanism of lidocaine against in vitro ischemic insult of the rat hippocampal CA1 pyramidal neurons.2005

    • Author(s)
      Niiyama S.
    • Journal Title

      Neurosci. 53・3

      Pages: 271-278

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Kinetic study of the mechanism of conversion of α-hydroxyheme to verdoheme while bound to heme oxygenase.2005

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Biochem.Biophys.Res.Commun. 338

      Pages: 578-583

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Heme oxygenase and heme degradation.2005

    • Author(s)
      Goro Kikuchi
    • Journal Title

      Biochem.Biophys.Res.Commun. 338

      Pages: 558-567

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Reconstruction of the expression system and characterization of human bifunctional peptidylglycine α-amidating monooxygenase.2005

    • Author(s)
      Saori Harada
    • Journal Title

      J.Kurume Med.Assoc. 68・7

      Pages: 187-200

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Structure and mechanism of heme oxygenase.2005

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      SEIKAGAKU 77・7

      Pages: 634-638

    • NAID

      10016603348

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Involvement of NADP(H)in the interaction between heme oxygenase-1 and cytochrome P450 reductase.2005

    • Author(s)
      Yuichiro Higashimoto
    • Journal Title

      J.Biol.Chem. 280・1

      Pages: 729-737

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ヘムオキシゲナーゼの立体構造から見た反応機構2005

    • Author(s)
      坂本 寛
    • Journal Title

      生化学みにれびゅー 77・7

      Pages: 634-638

    • Related Report
      2005 Annual Research Report
  • [Journal Article] ヒトペプチドC末端アミド化酵素-2頭酵素としての発現システムの検討および精製酵素の性質-2005

    • Author(s)
      原田 沙織
    • Journal Title

      久留米医学会雑誌 68・7

      Pages: 187-200

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Heme oxygenase and heme degradation2005

    • Author(s)
      Goro Kikuchi
    • Journal Title

      BBRC 338

      Pages: 558-567

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A Kinetic study of the mechanism of conversion of α-hydroxyheme to verdoheme while bound to heme oxygenase2005

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      BBRC 338

      Pages: 578-583

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Neuroprotective mechanisms of lidocaine against in vitro ischemic insult of the rat hippocampal CA1 pyramidal neurons2005

    • Author(s)
      Niiyama S
    • Journal Title

      Neurosci Res. 53・3

      Pages: 271-278

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Involvement of NADP(H) in the interaction between heme oxygenase-1 and cytochrome P450 reductase2005

    • Author(s)
      Yuichiro Higashimoto
    • Journal Title

      J.Biol.Chem. 280・1

      Pages: 729-737

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Purification and characterization of human uroporphyrinogen 3 synthase expressed in escherichia soli.2004

    • Author(s)
      Yoshiaki Omata
    • Journal Title

      J.Biochem. 136・2

      Pages: 211-20

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Hydroxylamine and hydrazine bind directly to the heme iron of the heme-heme oxygenase-l somplex.2004

    • Author(s)
      Hiroshi sakamoto
    • Journal Title

      J.Inorg.Biochem. 98

      Pages: 1223-8

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Characterization of rat heme oxygenase-3 gene.Implication of processed pseudogenes derived from heme oxygenase-2 gene.2004

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      GENE 336

      Pages: 241-50

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] CO-trapping site in heme oxygenase revealed by photolysis of its CO-bound heme complex : Mechanism of escaping from product2004

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      J.Mol.Biol 341

      Pages: 7-13

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Purification and characterization of hyman uroporphyrinogen III synthase expressed in escherichia coliI.2004

    • Author(s)
      Yoshiaki Omata
    • Journal Title

      J.Biochem. 136・2

      Pages: 2004-2004

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Hydrovylamine and hydrazine bind directly to the heme iron of the heme-heme oxygenase-1 complex.2004

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      J.Inorg.Biochem. 98

      Pages: 1223-1228

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Characterization of rat heme oxygenase-3 gene. Implication of processed pseudogenes derived from heme oxygenase-2 gene2004

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      GENE 336

      Pages: 241-250

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary 2004 Annual Research Report
  • [Journal Article] CO-trapping site in heme oxygenase revealed by photolysis of its CO-bound heme complex : Mechanism of escaping from product inhibition.2004

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      J.Mol.Biol. 341

      Pages: 4-13

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Purification and Characterization of Human Uroporphyrinogen III Synthase Expressed in Escherichia coli2004

    • Author(s)
      Yoshiaki Omata
    • Journal Title

      J.Biochem. 136・2

      Pages: 211-220

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Hydroxylamine and hydrazine bind directly to the heme iron of the heme-heme oxygenase-1 complex2004

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      J.Inorg.Biochem. 98

      Pages: 1223-1228

    • Related Report
      2004 Annual Research Report
  • [Journal Article] CO-trapping site in heme oxygenase revealed by photolysis of its CO-bound heme complex : Mechanism of escaping from product2004

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      J.Mol.Biol. 341

      Pages: 7-13

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal structure of ferrous and CO-,CN'-,and NO-bound of rat heme oxygenase-l(HO-1)in somplex eith heme : Stuctural implication for discriminatio between CO and O2in HO-12003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Biochemistry 42・33

      Pages: 9898-905

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of rat heme oxygenase-1 in complex with biloverdin-iron chelate.2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      J.Biol.Chem 278・34

      Pages: 32352-8

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of ferrous and CO-, CN^--, and NO-bound forms of rat heme oxygenase-1(HO-1)in complex with heme : Structural implication for discrimination between CO and O_2 in HO-1.2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Biochemistry 42・33

      Pages: 9898-9905

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate.2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      J.Biol.Chem. 278・34

      Pages: 32352-32358

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal Structures of Ferrous and CO-, CN^-, and NO-Bound Forms of Rat Heme Oxygenase-1 (HO-1) in Complex with Heme : Structural Implications for Discrimination between CO and O_2 in HO-12003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Biochemistry 42・33

      Pages: 9898-9905

    • Related Report
      2004 Annual Research Report
  • [Book] 基礎医学・生物系の同位体実験-放射性同位体・安定同位体・X線結晶分析の基礎-2005

    • Author(s)
      井上 浩義ら
    • Total Pages
      120
    • Publisher
      慧文社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 基礎医学・生物系の同位体実験-放射性同位体・安定同位体・X線結晶解析の基礎-2005

    • Author(s)
      井上浩義
    • Total Pages
      120
    • Publisher
      慧文社
    • Related Report
      2005 Annual Research Report
  • [Book] 医学教育ABC-学び方・教え方-2004

    • Author(s)
      吉田一郎ら
    • Total Pages
      294
    • Publisher
      篠原出版新社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 実践PBLチュートリアルガイド2004

    • Author(s)
      吉田一郎ら
    • Total Pages
      294
    • Publisher
      南山堂
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 実践PBLチュートリアルガイド2004

    • Author(s)
      野口 正人
    • Total Pages
      294
    • Publisher
      南山堂
    • Related Report
      2004 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide"The Journal of Biological Chemistry. 277・47. 45086-45090 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kenichi Takahashi: "Expression and characterization of frog peptidylglycine α-hydroxylating monooxygenase"Protein Expression and Purification. 27. 35-41 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Manabu Satani: "Expression and characterization of human bifunctional peptidylglycine α-amidating monooxygenase"Protein Expression and Purification. 28. 293-302 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Syunsuke Hayashi: "Purification and characterization of a soluble form of rat liver NADPH-cytochrome P-450 reductase highly expressed in Escherichia coli"Protein Expression and Purification. 29. 1-7 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal Structures of Ferrous and CO-, CN^-, and NO-Bbound Forms of Rat Heme Oxygenase-1 (HO-1) in Complex with Heme : Structural Implications for Discrimination between CO and O_2 in HO-1"Biochemistry. 42・33. 9898-9905 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal Structure of Rat heme Ooxygenase-1 in Complex with Bbiliverdin-Iron Chelate"The Journal of Biological Chemistry. 278・34. 32352-32358 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 野口 正人: "医学のための基礎分子生物学"南山堂. 120 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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