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Study of nematode mitochondrial translation system using parasitic nematodes

Research Project

Project/Area Number 15590365
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Parasitology (including Sanitary zoology)
Research InstitutionThe University of Tokyo

Principal Investigator

WATANABE Yoh-ichi  The University of Tokyo, Graduate School of Medicine, Lecturer, 大学院・医学系研究科, 講師 (90323568)

Co-Investigator(Kenkyū-buntansha) OHTSUKI Takashi  Okayama University, Faculty of Engineering, Lecturer, 工学部, 講師 (80321735)
KITA Kiyoshi  The University of Tokyo, Graduate School of Medicine, Professor, 大学院・医学系研究科, 教授 (90134444)
KAMIYA Haruo  Hirosaki University, Faculty of Medicine, Professor, 医学部, 教授 (70002079)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2004: ¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 2003: ¥1,900,000 (Direct Cost: ¥1,900,000)
Keywordsnematode / mitochondria / translation / tRNA / elongation factor Tu / Caenorhabditis elegans / Trichinella britovi
Research Abstract

Most nematode mitochondria have D-armless tRNAs, which also exist in most metazoan mitochondria, and T-armless tRNAs. On the other hand, bacterial translation elongation factor Tu (EF-Tu) needs T-arm of aminoacyl-tRNA for the complex formation. In order to investigate how nematode mitochondrial EF-Tu recognizes the T-armless tRNA, we cloned EF-Tus from various nemaotdes. Nematode have two distinct EF-Tus. Two EF-Tus, namely EF-Tu1 and EF-Tu2, have novel C-terminal extensions (about 40-60 residues and about 15 residues, respectively) when compared with bacterial EF-Tu. Caernarhabditis elegans and Trichinella britovi EF-Tu1 bound to the T-armless tRNAs, while EF-Tu2 bound to D-armless tRNAs. C.elegans EF-Tus and T.britovi EF-Tu2 could not bind to conventional tRNAs, while T.britovi EF-Tu1 could bind to conventional tRNAs. These results consist well with the fact that C.elegans mitochondria do not have any conventional tRNA but Trichinella mitochondria have. Deletion of 10 residues of C-terminus of both of C.elegans EF-Tus lead to loss of binding to the D-armless or the T-armless tRNAs, suggesting the novel C-Terminal extensions may involve in interaction between EF-Tus and the truncated nematode tRNAs. In summary, the nematode mitochondrial EF-Tu adapted to the deletion of D-arm or T-arm of tRNAs by the gene duplication and aquirment of novel C-terminal extension to make a new interaction between the truncated tRNA and EF-Tu.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (20 results)

All 2005 2004 2003 Other

All Journal Article (14 results) Publications (6 results)

  • [Journal Article] Modification at position 9 with 1-methyladenosine is crucial for structure and function of nematode mitochondrial tRNAs lacking the entire T-arm2005

    • Author(s)
      Sakurai M
    • Journal Title

      Nucleic Acids Research 33

      Pages: 1653-1661

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Unusual usage of wobble modifications in mitochondrial tRNAs of the nematode Ascaris suum2005

    • Author(s)
      Sakurai M
    • Journal Title

      FEBS Letters (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] 寄生虫のmtDNA2005

    • Author(s)
      北潔
    • Journal Title

      蛋白質核酸酵素 (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Modification at position 9 with 1-methyladenosine is crucial for structure and function of nematode mitochondrial tRNAs lacking the entire T-arm2005

    • Author(s)
      Sakurai M et al.
    • Journal Title

      Nucleic Acids Research 33

      Pages: 1653-1661

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Modified sugar centrifugal flotation technique for recovering Echinococcus multilocularis eggs from soil2005

    • Author(s)
      Matsuo K. et al.
    • Journal Title

      J.Parasitol (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 寄生虫のmtDNA2005

    • Author(s)
      渡邊ら
    • Journal Title

      蛋白質核酸酵素 (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] T cell-dependent elimination of dividing Trypanosoma grosi from the bloodstream of Mongolian jirds2004

    • Author(s)
      Sato H.et al.
    • Journal Title

      Parasitology 128

      Pages: 295-304

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Transmission electron microscopy of Schistosoma mansoni cercariae treated with hinokitiol(beta-thujaplicin), a compound for potential skin application against cercarial penetration2004

    • Author(s)
      Chisty MM et al.
    • Journal Title

      Tohoku J.Exp.Med 202

      Pages: 63-67

    • Related Report
      2004 Annual Research Report
  • [Journal Article] ミトコンドリアの翻訳システム2003

    • Author(s)
      渡辺公綱
    • Journal Title

      蛋白質核酸酵素 48

      Pages: 365-374

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Quick two-step RNA ligation employing periodate oxidation2003

    • Author(s)
      Kurata S
    • Journal Title

      Nucleic Acids Research 31

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Recent topics in mitochondrial translation systems2003

    • Author(s)
      Watanabe K et al.
    • Journal Title

      Tanpakushitsu Kakusan Koso 48

      Pages: 365-374

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Quick two-step RNA ligation employing periodate oxidation2003

    • Author(s)
      Kurata S et al.
    • Journal Title

      Nucleic Acids Research 31

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Unusual usage of wobble modifications in mitochondrial tRNAs of the nematode Ascaris suum

    • Author(s)
      Sakurai M et al.
    • Journal Title

      FEBS Letters (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Mitochondrial DNA of parasites

    • Author(s)
      Kita, K, Watanabe, Y.
    • Journal Title

      Tanpakushitsu Kakusan koso (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Adachi A et al.: "Complementation of Escherichia coli ubiF mutation by Caenorhabditis elegans CLK-1, a product of the longevity gene of the nematode worm."FEBS Letters. 543. 174-178 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 渡辺, 大槻, 鈴木: "ミトコンドリアの翻訳システム"蛋白質核酸酵素. 48. 365-374 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kurahata et al.: "Quick two-step RNA ligation employing periodate oxidation"Nucleic Acids Research. 31. E145 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Higurashi et al.: "Identification and characterization of an intermediate in the alkali degradation of (6-4) photoproduct-containing DNA"Journal of Biological Chemistry. 278. 51968-51973 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ishita K. et al.: "Immunodiagonosis of trichinellosis by using muscle stage larval sections."Hirosaki Medical Journal. 53. 43-48 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Miyadera et al.: "Atpenins, potent and specific inhibitors of mitochondrial complex II (succinate-ubiquinone oxidoreductase)."Proceedings of the National Academy of Sciences, USA. 100. 473-477 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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