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Molecular dissection of a medicinal herb and identification of target genes by oligonucleotide microarray

Research Project

Project/Area Number 15590598
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field General internal medicine (including Psychosomatic medicine)
Research InstitutionYamaguchi University

Principal Investigator

IIZUKA Norio  Yamaguchi University, School of Medicine, Dept.Bioregulatory Function, Research Associate, 医学部, 寄附講座教員 (80332807)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 2004: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 2003: ¥1,200,000 (Direct Cost: ¥1,200,000)
KeywordsDNA microarray / Herb / Fingerprint / Alkaroid / Pancreatic cancer
Research Abstract

Substances derived from plants, animals and other natural sources may be useful as medicinal drugs. Since ancient times, such natural substances have been applied to medical practice, albeit somewhat empirically. It is believed that use of natural substances in medical practice will increase. However, most herbal medicines are complex mixtures of a variety of known and unknown constituents. Therefore, it remains unclear how a single molecule in a complex herbal medicines exerts a biological effect and interacts with other molecules. Thus, it is difficult to understand precisely the physiological actions of herbs because they contain a complex array of constituent molecules.
In this study we used DNA microarray data for 12600 genes to examine the anti-proliferative activity of the herb Coptidis rhizoma and eight constituent molecules against eight human pancreatic cancer cell lines. We identified 27 genes showing strong correlation with the 50% inhibitory dose (ID50) of C. rhizoma after 72-h exposure. Hierarchical cluster analysis with correlation coefficients between expression levels of these 27C. rhizoma-related genes and the ID50 of each constituent molecule classified these test molecules into two clusters, one consisting of C. rhizoma and berberine and the other consisting of the remaining seven molecules. Our results suggest that one molecule, berberine, can account for the majority of the anti-proliferative activity of C. rhizoma and that DNA microarray analyses can be used to improve our understanding of the actions of an intact herb.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (19 results)

All 2005 2004 Other

All Journal Article (11 results) Book (2 results) Publications (6 results)

  • [Journal Article] Self-organizing-map-based molecular signature representing the development of hepatocellular carcinoma.2005

    • Author(s)
      Iizuka N et al.
    • Journal Title

      FEBS Lett. 579

      Pages: 1089-1100

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Sex-based molecular profiling of hepatitis C virus-related hepatocellular carcinoma2005

    • Author(s)
      Takemoto N, Iizuka N et al.
    • Journal Title

      Int.J.Oncol. 26

      Pages: 673-678

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Tumor HLA-DR expression linked to early intrahepatic recurrence of hepatocellular carcinoma.2005

    • Author(s)
      Matoba R., Iizuka N et al.
    • Journal Title

      Int.J.Cancer 115

      Pages: 231-240

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular dissection of a medicinal herb with anti-tumor activity by oligonucleotide microarray2005

    • Author(s)
      Hara A., Iizuka N et al.
    • Journal Title

      life Sci. (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Self-organizing-map-based molecular signature representing the development of hepatocellular carcinoma.2005

    • Author(s)
      Iizuka N et al.
    • Journal Title

      FEBS Letters 579

      Pages: 1089-1100

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Tumor HLA-DR expression linked to early intrahepatic recurrence of hepatocellular carcinoma.2005

    • Author(s)
      Matoba R, Iizuka N et al.
    • Journal Title

      Int.J.Cancer (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Molecular dissection of a medicinal herb with anti-tumor activity by oligonucleotide microarray2005

    • Author(s)
      Hara A, Iizuka N et al.
    • Journal Title

      Life Sci. (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Predicting individual outcomes in hepatocellular carcinoma.2004

    • Author(s)
      Iizuka N et al.
    • Journal Title

      LANCET 364

      Pages: 1837-1839

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] 肝細胞癌のトランスクリプトームと予後予測2004

    • Author(s)
      飯塚徳男 他
    • Journal Title

      ゲノム医学 4

      Pages: 269-275

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Predicting individual outcomes in hepatocellular carcinoma.2004

    • Author(s)
      Iizuka N et al.
    • Journal Title

      Lancet 364

      Pages: 1837-1839

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular dissection of a medicinal herb with anti-tumor activity by oligonucleotide microarray

    • Author(s)
      Hara A, Iizuka N et al.
    • Journal Title

      Life Sciences (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] Hepatocellular carcinoma of differential viral origin : analysis by oligonucleotide microarray (Cancer-Handbook (edited by Prof.M.A Hayat))2005

    • Author(s)
      Iizuka N et al.
    • Publisher
      Elsevier Inc.(in press)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] Hepatocellular carcinoma of differential viral origin : analysis by oligonucleotide microarray (Cancer Handbook edited by Prof. M.A.Hayat)2005

    • Author(s)
      Iizuka N et al.
    • Publisher
      Elsevier Inc.(in press)
    • Related Report
      2004 Annual Research Report
  • [Publications] Iizuka N, et al.: "Oligonucleotide microarray for prediction of early intrahepatic recurrence of hepatocellular carcinoma after curative resection"Lancet. 361. 923-929 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Iizuka N, et al.: "Telomerase activity and Nm23-H2 protein expression in hepatocellular carcinoma"Anticancer Resarch. 23. 43-47 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Iizuka N, et al.: "Differential gene expression in distinct virologic types of hepatocellular carcinoma : association with liver cirrhosis"Oncogene. 22. 3007-3014 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Iizuka N, et al.: "Identification of common or distinct genes related to antitumor activities of a medicinal herb and its major component"International Journal of Cancer. 107. 666-672 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Okada T, Iizuka N, et al.: "Gene expression profile linked to p53 status in hepatitis C virus-related hepatocellular carcinoma"FEBS Letters. 555. 583-590 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Iizuka N, et al.: "Molecular signature in three types of hepatocellular carcinoma with different viral origin by oligonucleotide microarray"International Journal of Oncology. 24. 565-574 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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