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Structure and dynamics of the type III secretion system

Research Project

Project/Area Number 15H02386
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

Imada Katsumi  大阪大学, 理学研究科, 教授 (40346143)

Co-Investigator(Kenkyū-buntansha) 川岸 郁朗  法政大学, 生命科学部, 教授 (80234037)
Co-Investigator(Renkei-kenkyūsha) MINAMINO Tohru  大阪大学, 大学院生命機能研究科, 准教授 (20402993)
KAWAMOTO Akihiro  大阪大学, 大学院生命機能研究科, 研究員 (90631523)
KAWAGUCHI Tatsuya  大阪大学, 大学院理学研究科, 助教 (10314353)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥40,690,000 (Direct Cost: ¥31,300,000、Indirect Cost: ¥9,390,000)
Fiscal Year 2017: ¥10,140,000 (Direct Cost: ¥7,800,000、Indirect Cost: ¥2,340,000)
Fiscal Year 2016: ¥10,140,000 (Direct Cost: ¥7,800,000、Indirect Cost: ¥2,340,000)
Fiscal Year 2015: ¥20,410,000 (Direct Cost: ¥15,700,000、Indirect Cost: ¥4,710,000)
Keywords構造生物学 / 生物物理 / 細菌 / 結晶構造解析 / 電子顕微鏡 / 蛋白質輸送
Outline of Final Research Achievements

Type III secretion system (T3SS) is one of the bacterial protein transporters used to deliver virulence proteins directly into their eukaryotic host cells for infection. To elucidate the molecular mechanism of the type III secretion, we investigated the flagellar T3SS, which is used for construction of the bacterial flagellum and is the most well-studied T3SS, by X-ray crystallography, electron microscopy, atomic force microscopy and inverted membrane vesicle assay techniques. We solved the structure of the export ATPase complex and found its novel roles on T3SS export. The structure of an export chaperone was also determined and the regulation mechanism of the secretion order was revealed. In addition, we proposed novel mechanistic models on the flagellar protein export, such as the mechanism of the export substrate switching, the assembly mechanism of the export gate complex and regulation of protein export by the interaction between the export substrates.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (59 results)

All 2018 2017 2016 2015 Other

All Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 7 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (49 results) (of which Int'l Joint Research: 2 results,  Invited: 9 results) Book (2 results) Remarks (1 results)

  • [Journal Article] The Helix Rearrangement in the Periplasmic Domain of the Flagellar Stator B Subunit Activates Peptidoglycan Binding and Ion Influx2018

    • Author(s)
      Kojima Seiji, Takao Masato, Almira Gaby, Kawahara Ikumi, Sakuma Mayuko, Homma Michio, Kojima Chojiro, Imada Katsumi.
    • Journal Title

      Structure

      Volume: 26 Issue: 4 Pages: 590-598

    • DOI

      10.1016/j.str.2018.02.016

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and Preparation of the Fragment Proteins of the Flagellar Components Suitable for X-Ray Crystal Structure Analysis2017

    • Author(s)
      Imada Katsumi
    • Journal Title

      Methods Mol Biol

      Volume: 1593 Pages: 97-103

    • DOI

      10.1007/978-1-4939-6927-2_7

    • ISBN
      9781493969265, 9781493969272
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Assembly and stoichiometry of the core structure of the bacterial flagellar type III export gate complex2017

    • Author(s)
      Fukumura Takuma、Makino Fumiaki、Dietsche Tobias、Kinoshita Miki、Kato Takayuki、Wagner Samuel、Namba Keiichi、Imada Katsumi、Minamino Tohru
    • Journal Title

      PLOS Biology

      Volume: 15 Issue: 8 Pages: e2002281-e2002281

    • DOI

      10.1371/journal.pbio.2002281

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bacterial flagellar axial structure and its construction2017

    • Author(s)
      Imada Katsumi
    • Journal Title

      Biophysical Reviews

      Volume: 10 Issue: 2 Pages: 559-570

    • DOI

      10.1007/s12551-017-0378-z

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural differences in the bacterial flagellar motor among bacterial species2017

    • Author(s)
      Terashima Hiroyuki、Kawamoto Akihiro、Morimoto Yusuke V.、Imada Katsumi、Minamino Tohru
    • Journal Title

      Biophysics and Physicobiology

      Volume: 14 Issue: 0 Pages: 191-198

    • DOI

      10.2142/biophysico.14.0_191

    • NAID

      130006252950

    • ISSN
      2189-4779
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Rearrangements of α-helical structures of FlgN chaperone control the binding affinity for its cognate substrates during flagellar type III export.2016

    • Author(s)
      Kinoshita, M., Nakanishi, Y., Furukawa, Y., Namba, K., Imada, K., Minamino, T.
    • Journal Title

      Mol. Microbiol.

      Volume: 101 Issue: 4 Pages: 656-670

    • DOI

      10.1111/mmi.13415

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator.2016

    • Author(s)
      Imada, K., Minamino, T., Uchida, Y., Kinoshita, M., Namba, K.
    • Journal Title

      Proc. Natl Acad. Sci. USA

      Volume: 113(13) Issue: 13 Pages: 3633-3638

    • DOI

      10.1073/pnas.1524025113

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 蛍光を用いたべん毛III型蛋白質輸送の計測2018

    • Author(s)
      戸野侃,高田啓矢,寺島浩行,田端和仁,上野博史,野地博行,今田勝巳
    • Organizer
      第23回べん毛研究交流会
    • Related Report
      2017 Annual Research Report
  • [Presentation] べん毛先端のキャップ構造.2018

    • Author(s)
      木田葵,牧野文信,木下実紀, 宮田知子, 加藤貴之, 南野徹, 難波啓一, 今田勝巳.
    • Organizer
      第23回べん毛研究交流会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 細菌べん毛FlgGの全長構造とディスタルロッドの構造2018

    • Author(s)
      西條由見子, 松波秀行, 難波啓一, 今田勝巳.
    • Organizer
      第23回べん毛研究交流会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 反転膜小胞を用いた細菌べん毛軸構造の in vitro での構築2018

    • Author(s)
      寺島浩行, 巽千夏, 川本晃大, 南野徹, 今田勝巳
    • Organizer
      第91回日本細菌学会総会
    • Related Report
      2017 Annual Research Report
  • [Presentation] べん毛フィラメントキャップの構造2018

    • Author(s)
      木田葵、牧野文信、木下実紀、宮田知子、加藤貴之、難波啓一、南野徹、今田勝巳
    • Organizer
      第5回生命分子科学研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] X 線と電子線の相補利用で解明するべん毛軸構造2017

    • Author(s)
      今田勝巳
    • Organizer
      蛋白質研究所セミナー
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] べん毛モーターMS リングの内側部位を形成するFliF 断片の構造解析.2017

    • Author(s)
      竹川宜宏、佐久間麻由子、小嶋誠司、本間道夫、今田勝巳.
    • Organizer
      第14回21世紀大腸菌研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Structure and assembly of bacterial flagellar axial proteins2017

    • Author(s)
      Imada K
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 細菌III型輸送装置の構造と輸送のしくみ2017

    • Author(s)
      今田勝巳
    • Organizer
      第26回WSフォーラム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 細菌べん毛 III 型分泌装置によるタンパク質輸送の in vitro 再構成2017

    • Author(s)
      寺島浩行、 川本晃大、 巽千夏、 難波啓一、 南野徹、 今田勝巳
    • Organizer
      第54回日本細菌学会中部支部総会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 反転膜小胞を用いた細菌べん毛III型分泌装置によるタンパク質輸送のin vitro再構成2017

    • Author(s)
      寺島浩行、川本晃大、巽千夏、難波啓一、南野徹、今田勝巳
    • Organizer
      生命科学系学会合同年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 反転膜小胞を用いた細菌べん毛軸構造のin vitroでの構築2017

    • Author(s)
      寺島浩行、巽千夏、川本晃大、南野徹、今田勝巳
    • Organizer
      日本生体エネルギー研究会第43回討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] The role of a flexible linker of FlhA in substrate specificity switching of the bacterial flagellar type III export apparatus2017

    • Author(s)
      Inoue Y, Kida M, Kinoshita M, Imada K, Namba K, Minamino T.
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Quantitative analysis of the flagellar type III protein export using the inverted membrane vesicles.2017

    • Author(s)
      Tono T, Terashima H, Tabata K, Ueno H, Noji H, Imada K.
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Purification and reconstitution of the flagellar type III protein export apparatus.2017

    • Author(s)
      Terashima H, Imada K.
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Structural basis of the mechanical properties of the flagellar distal rod and the hook.2017

    • Author(s)
      Saijo-Hamano Y, Matsunami H, Namba K, Imada K.
    • Organizer
      日本生物物理学会第55回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 反転膜を用いたべん毛III型蛋白質輸送の定量測定.2017

    • Author(s)
      戸野侃、寺島浩行、田端和仁、上野博史、野地博行、今田勝巳
    • Organizer
      日本生体エネルギー研究会第43回討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] べん毛のin vitro構築.2017

    • Author(s)
      今田勝巳.
    • Organizer
      生体運動研究合同班会議2017
    • Place of Presentation
      神戸国際会議場(神戸市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] In vitro observation of the bacterial flagellar type III protein export.2017

    • Author(s)
      Imada K.
    • Organizer
      OIST International Workshop on Bacterial Flagella, Injectisomes and Type III Secretion Systems
    • Place of Presentation
      OIST (Onna Okinawa)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Conformational rearrangement of FlhA is critical for flagellar type III protein export.2017

    • Author(s)
      Inoue Y, Kinoshita M, Kitano A, Imada K, Namba K, Minamino T.
    • Organizer
      OIST International Workshop on Bacterial Flagella, Injectisomes and Type III Secretion Systems
    • Place of Presentation
      OIST (Onna Okinawa)
    • Related Report
      2016 Annual Research Report
  • [Presentation] In Vitro Reconstitution of the Protein Export of the Flagellar TypeIII Secretion System by Using the Inverted Membrane Vesicles.2017

    • Author(s)
      Terashima H, Kawamoto A, Tatsumi C, Namba K, Minamino T, Imada K.
    • Organizer
      OIST International Workshop on Bacterial Flagella, Injectisomes and Type III Secretion Systems
    • Place of Presentation
      OIST (Onna Okinawa)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 細菌べん毛III型輸送装置の構造と輸送機構.2017

    • Author(s)
      今田勝巳.
    • Organizer
      第4回生命分子科学研究会
    • Place of Presentation
      ホテル鹿の湯 (札幌)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 細菌べん毛III型輸送装置の構造と輸送機構.2017

    • Author(s)
      今田勝巳.
    • Organizer
      第90回日本細菌学会総会
    • Place of Presentation
      仙台国際センター (仙台)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Molecular basis for dynamic structural properties of the C ring in the bacterial flagellar motor.2016

    • Author(s)
      Kinoshita M, Furukawa Y, Imada K, Namba K, Minamino T.
    • Organizer
      Gordon research conference “Sensory transduction in microorganisms”
    • Place of Presentation
      Ventura beach Marriott (Ventura, USA)
    • Year and Date
      2016-01-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 蛋白質輸送体の中に存在する、回転分子モーターによく似た複合体.2016

    • Author(s)
      寺島浩行,川本晃大, 巽千夏, 難波啓一, 南野徹, 今田勝巳.
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 高速原子間力顕微鏡で調べる回転分子モーターの構造ダイナミクス.2016

    • Author(s)
      内橋貴之,今村元紀, 村田武士, 飯野亮太, 今田勝巳, 横山謙, 安藤敏夫.
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] III型輸送装置による蛋白質輸送の計測.2016

    • Author(s)
      今田勝巳.
    • Organizer
      産学高分子研究会
    • Place of Presentation
      大阪大学
    • Related Report
      2016 Annual Research Report
  • [Presentation] 細菌べん毛のin vitroでの再構築.2016

    • Author(s)
      今田勝巳.
    • Organizer
      第6回分子モーター討論会
    • Place of Presentation
      大阪大学
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 反転膜小胞を用いた細菌III型分泌装置による蛋白質輸送の再構成.2016

    • Author(s)
      寺島浩行,川本晃大, 巽千夏, 難波啓一, 南野徹, 今田勝巳.
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      東北大学(仙台)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 反転膜小胞を用いた細菌III型分泌装置によるタンパク質輸送の定量解析.2016

    • Author(s)
      戸野侃, 寺島浩行, 田端和仁, 上野博史, 松田知己, 永井健治, 野地博行, 今田勝巳.
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      東北大学(仙台)
    • Related Report
      2016 Annual Research Report
  • [Presentation] In vitro reconstitution of the bacterial flagellar type III protein export.2016

    • Author(s)
      Terashima H, Tatsumi C, Kawamoto A, Namba K, Minamino T, Imada K.
    • Organizer
      日本生物物理学会第54回年会
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2016 Annual Research Report
  • [Presentation] Secretion order of the Class-II flagellar axial proteins analyzed by inverted membrane vesicles (IMV).2016

    • Author(s)
      Matsumoto Y, Tatsumi C, Terashima H, Minamino T, Imada K.
    • Organizer
      日本生物物理学会第54回年会
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2016 Annual Research Report
  • [Presentation] Conformational rearrangement of FlhA is critical for ordered protein export during flagellar assembly.2016

    • Author(s)
      Inoue Y, Ogawa Y, Kinoshita M, Imada K, Namba K, Minamino T.
    • Organizer
      日本生物物理学会第54回年会
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2016 Annual Research Report
  • [Presentation] Fluorescence detection of the flagellar type III protein export using the inverted membrane vesicles.2016

    • Author(s)
      Tono T, Terashima H, Tabata K, Ueno H, Matsuda T, Nagai T, Noji H, Imada K.
    • Organizer
      日本生物物理学会第54回年会
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2016 Annual Research Report
  • [Presentation] Observation of conformational dynamics of FliI by HS-AFM.2016

    • Author(s)
      Adachi K, Kishikawa J-I, Terashim H, Uchihashi T, Imada K, Yokoyama K, Ando T.
    • Organizer
      日本生物物理学会第54回年会
    • Place of Presentation
      つくば国際会議場
    • Related Report
      2016 Annual Research Report
  • [Presentation] 蛍光ラベルした細菌べん毛蛋白質のin vitro輸送測定系を用いた検出.2016

    • Author(s)
      戸野侃, 寺島浩行, 巽千夏, 川本晃大, 田端和仁, 上野博史, 松田知己, 永井健治, 野地博行, 難波啓一, 南野徹, 今田勝巳.
    • Organizer
      日本生体エネルギー研究会第42回討論会
    • Place of Presentation
      名古屋工業大学
    • Related Report
      2016 Annual Research Report
  • [Presentation] べん毛づくりの進展.2016

    • Author(s)
      今田勝巳
    • Organizer
      第8回膜輸送体研究会
    • Place of Presentation
      新富良野プリンスホテル(富良野)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 反転膜を用いたべん毛軸構造の構築. べん毛モーター回転子リング複合体の動的機能構造.2016

    • Author(s)
      寺島浩行, 巽千夏, 南野徹, 今田勝巳.
    • Organizer
      第21回べん毛研究交流会
    • Place of Presentation
      滝の湯(天童市 山形県)
    • Related Report
      2015 Annual Research Report
  • [Presentation] 作動中のべん毛輸送装置の可視化.2016

    • Author(s)
      松本雄大, 川本晃大, 巽千夏, 寺島浩行, 南野徹, 難波啓一, 今田勝巳.
    • Organizer
      第21回べん毛研究交流会
    • Place of Presentation
      滝の湯(天童市 山形県)
    • Related Report
      2015 Annual Research Report
  • [Presentation] べん毛タンパク質輸送ゲートを構成するFliPの機能構造解析.2016

    • Author(s)
      1.福村拓真, 牧野文信, 加藤貴之, 今田勝巳, 難波啓一,南野徹.
    • Organizer
      第21回べん毛研究交流会
    • Place of Presentation
      滝の湯(天童市 山形県)
    • Related Report
      2015 Annual Research Report
  • [Presentation] 反転膜小胞を用いたIII型分泌装置のin vitroタンパク質輸送計測2015

    • Author(s)
      寺島浩行, 川本晃大, 南野徹, 難波啓一, 今田勝巳.
    • Organizer
      第12回21世紀大腸菌研究会
    • Place of Presentation
      琵琶湖グランドホテル京近江(滋賀県 大津市)
    • Related Report
      2015 Annual Research Report
  • [Presentation] バクテリアFlgN シャペロンの機能構造スイッチの分子基盤2015

    • Author(s)
      木下実紀, 中西雄紀, 難波啓一, 今田勝巳, 南野徹
    • Organizer
      第12回21世紀大腸菌研究会
    • Place of Presentation
      琵琶湖グランドホテル京近江(滋賀県 大津市)
    • Related Report
      2015 Annual Research Report
  • [Presentation] 反転膜ベシクルを用いたべん毛軸構造の構築2015

    • Author(s)
      巽千夏, 寺島浩行, 南野徹, 今田勝巳
    • Organizer
      第12回21世紀大腸菌研究会
    • Place of Presentation
      琵琶湖グランドホテル京近江(滋賀県 大津市)
    • Related Report
      2015 Annual Research Report
  • [Presentation] An energy transduction mechanism of the bacterial flagellar type III secretion apparatus.2015

    • Author(s)
      Terashima H, Kawamoto A, Tatsumi C, Minamino T, Namba K, Imada K.
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学
    • Related Report
      2015 Annual Research Report
  • [Presentation] Structure characterization of FliP, a component of flagellar type III protein export apparatus.2015

    • Author(s)
      Fukumura T, Makino F, Kato T, Imada K, Namba K, Minamino T.
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学
    • Related Report
      2015 Annual Research Report
  • [Presentation] Construction of the flagellar axial structure using inverted membrane vesicles.2015

    • Author(s)
      Tatsumi C, Terashima H, Minamino T, Imada K.
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学
    • Related Report
      2015 Annual Research Report
  • [Presentation] Molecular basis for a structural switch of FlgN that regulates its chaperone activity.2015

    • Author(s)
      Kinoshita M, Nakanishi Y, Furukawa Y, Imada K, Namba K, Minamino T.
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学
    • Related Report
      2015 Annual Research Report
  • [Presentation] Molecular mechanism of the flagellar biogenesis revealed by in vitro transport assay system.2015

    • Author(s)
      Imada K.
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 反転膜ベシクルを用いたべん毛軸構造の構築.2015

    • Author(s)
      巽千夏, 寺島浩行, 南野徹, 今田勝巳.
    • Organizer
      第38回日本分子生物学会年会 第88回日本生化学会大会 合同大会
    • Place of Presentation
      神戸ポートアイランド(神戸)
    • Related Report
      2015 Annual Research Report
  • [Book] 第15章 少数で製造をコントロール (少数性生物学)2017

    • Author(s)
      今田勝巳(永井健治、冨樫祐一 編)
    • Total Pages
      192
    • Publisher
      日本評論社
    • ISBN
      9784535788169
    • Related Report
      2017 Annual Research Report
  • [Book] 少数で製造を制御する -べん毛をいつどこで、何本生やす?-(実験医学 2017年12月号)2017

    • Author(s)
      今田勝巳, 小嶋誠司 (永井健治 企画)
    • Total Pages
      137
    • Publisher
      羊土社
    • ISBN
      9784758125024
    • Related Report
      2017 Annual Research Report
  • [Remarks] 世界初!細菌べん毛III型輸送装置ができるしくみを解明―全く新しいタイプの感染症薬の開発に期待 ―

    • URL

      http://www.sci.osaka-u.ac.jp/ja/topics/6107/

    • Related Report
      2017 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2019-10-18  

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