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Versatile biosensors with signal amplification based on dynamic programming of DNA structure

Research Project

Project/Area Number 15H03829
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Analytical chemistry
Research InstitutionKumamoto University

Principal Investigator

Ihara Toshihiro  熊本大学, 大学院先端科学研究部(工), 教授 (40253489)

Co-Investigator(Kenkyū-buntansha) 吉本 惣一郎  熊本大学, 大学院先端科学研究部(工), 准教授 (30323067)
今堀 龍志  東京理科大学, 工学部工業化学科, 准教授 (90433515)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2017: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2016: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2015: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
KeywordsDNAサーキット / HCR / 鎖交換反応 / 発光性希土類金属錯体 / フェロセン / シクロデキストリン / 電気化学 / シグナル増幅反応 / 化学的ライゲーション / DNAコンジュゲート / 電気化学法 / バイオ分析 / シグナル増幅 / 希土類錯体 / 発光性希土類錯体 / 時間分解発光測定 / 協同的シグナル生成 / 電気化学検出
Outline of Final Research Achievements

We have developed the signal amplification systems consisting of chemically-modified DNA conjugates. The luminescence and electrochemical signals were catalytically amplified with autonomous successive DNA strand exchanges such as HCR (hybridization chain reaction) and DNA circuits. The luminous signal amplification was performed with EDTA- and Phen (1,10-phenanthrorine)-modified DNA in the presence of lanthanide (Tb3+ or Eu3+) ion. The complexes formed on the certain DNA structures such as tandem duplex DNA, long tandem DNA wire, and cruciform DNA. Their luminescence lifetimes were extremely long as those of the typical luminous Ln complexes and their luminescence quantum yields were moderate, ca. 10 %. Electrochemical signals were amplified through entropy-driven DNA circuit consisting of Fc (ferrocene)- and βCyD (β-cyclodextrin)-modified DNA. We succeeded in enhancing the signals more by trapping Fc-DNA on the electrode modified with its complementary DNA.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (27 results)

All 2019 2017 2016 2015 Other

All Int'l Joint Research (2 results) Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (15 results) (of which Int'l Joint Research: 8 results,  Invited: 12 results) Book (1 results) Remarks (3 results)

  • [Int'l Joint Research] Rutgers University/Florida University(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Murdoch University(オーストラリア)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Electrochemical Sensing of Neurotoxic Agents Based on Their Electron Transfer Promotion Effect on an Au Electrode2017

    • Author(s)
      Hiroshi Shimada, Shiori Noguchi, Masahiro Yamamoto, Katsuhiko Nishiyama, Yusuke Kitamura, and Toshihiro Ihara
    • Journal Title

      Analytical Chemistry

      Volume: 89 Issue: 11 Pages: 5742-5747

    • DOI

      10.1021/acs.analchem.6b04229

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electrochemical Sensing of Neurotoxic Agents Based on Their Electron Transfer Promotion Effect on an Au Electrode2017

    • Author(s)
      H. Shimada, S. Noguchi, M. Yamamoto, K. Nishiyama, Y. Kitamura, T. Ihara
    • Journal Title

      Analytical Chemistry

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sensitive Electrochemical Detection of Nereistoxin by Reductive Desorption from Au(111) and Au(100)2016

    • Author(s)
      K. Nishiyama, K. Tsuruta, M. Ikeda, S. Yoshimoto, H. Shimada, Y. Kitamura, T. Ihara
    • Journal Title

      Electrochemistry

      Volume: 84 Issue: 5 Pages: 349-353

    • DOI

      10.5796/electrochemistry.84.349

    • NAID

      130005150422

    • ISSN
      1344-3542, 2186-2451
    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Metal Ion-directed Dynamic Splicing of DNA through Global Conformational Change by Intramolecular Complexation2015

    • Author(s)
      T. Ihara, H. Ohura, C. Shirahama, T. Furuzono, H. Shimada, H. Matsuura, Y. Kitamura
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 6640-6640

    • DOI

      10.1038/ncomms7640

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Graphene Oxide-based Amplified Fluorescence Sensor for Nucleic Acid Detection through Target-catalyzed Hairpin Assembly2015

    • Author(s)
      Y. Kitamura, T. Miyahata, H. Matsuura, K. Hatakeyama, T. Taniguchi, M. Koinuma, Y. Matsumoto, T. Ihara
    • Journal Title

      Chemistry Letters

      Volume: 44 Issue: 10 Pages: 1353-1355

    • DOI

      10.1246/cl.150564

    • NAID

      130005101443

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Oxide: A Fertile Nanosheet for Various Applications2015

    • Author(s)
      S. Obata, K. Saiki, T. Taniguchi, T. Ihara, Y. Kitamura, and Y. Matsumoto
    • Journal Title

      J. Phys. Soc. Jpn.

      Volume: 84 Issue: 12 Pages: 121012-121029

    • DOI

      10.7566/jpsj.84.121012

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 核酸を基体とするバイオセンシン グ2017

    • Author(s)
      井原敏博
    • Organizer
      高分子学会九州支部 有機材料研究グループ研究会
    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Invited
  • [Presentation] Target Recognition by Global DNA Structural Control2017

    • Author(s)
      Toshihiro Ihara
    • Organizer
      FIBER International Summit for Nucleic Acids 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 人工DNAの構造制御 バイオ分析・機能制御を目指して2017

    • Author(s)
      井原敏博
    • Organizer
      第50回 歯工連携講演会
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] DNAを鋳型とするルテニウムー白金混合錯体の形成脱離と質量分析による核酸検出への応用2017

    • Author(s)
      北村裕介、川口隼也、船木遼、井原敏博
    • Organizer
      日本分析化学会第66年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Capture of cancer cells on a gold substrate modified with DNA aptamer2017

    • Author(s)
      Y. Kitamura, A. Tashima, M. Nakamura, Y. Nakashima, K. Yasuda, M.Iwatsuki, Y. Katsuda, H. Baba, Y. Nakanishi, T. Ihara
    • Organizer
      International Symposium on Nucleic Acids Chemistry 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA circuit-based catalytic amplification of the luminescent lanthanide complexes2016

    • Author(s)
      Yukina Azuma, Rie Ozaki, Yusuke Kitamura, Toshihiro Ihara
    • Organizer
      The 43rd International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      熊本大学
    • Year and Date
      2016-09-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] DNA の動的プログラミングを利用したバイオセンシング2016

    • Author(s)
      井原敏博
    • Organizer
      日本分析化学会第65年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2016-09-14
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Metal Complexation on DNA -For DNA Structural Control and Biosensing-2016

    • Author(s)
      Toshihiro Ihara
    • Organizer
      FIBER International Summit for Nucleic Acids 2016
    • Place of Presentation
      甲南大学
    • Year and Date
      2016-07-06
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] BIOSENSING BASED ON RARE EARTH METAL COMPLEX FORMATION THROUGH DYNAMIC PROGRAMMING OF DNA STRUCTURE2016

    • Author(s)
      Toshihiro Ihara, Yukina Azuma, Rie Ozaki, Akihiro Nozaki, Takaaki Miyahata, Yusuke Kitamura
    • Organizer
      Rare Earths 2016 in Sapporo
    • Place of Presentation
      北海道大学
    • Year and Date
      2016-06-05
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cooperative formation of metal complexes on nucleic acids2016

    • Author(s)
      Yusuke Kitamura, Yukina Azuma, Shikinari Yamamoto,Toshihiro Ihara
    • Organizer
      7th International Symposium on Bioanalysis, Biomedical Engineering and Nanotechnology
    • Place of Presentation
      Hunan University
    • Year and Date
      2016-05-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] DNA上での錯生成反応 -バイオ分析・機能制御を目指して-2016

    • Author(s)
      井原敏博
    • Organizer
      名古屋大学大学院物質制御工学選考セミナー
    • Place of Presentation
      名古屋大学
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 核酸上での錯生成反応 -核酸の構造制御およびバイオ分析への応用-2015

    • Author(s)
      井原敏博
    • Organizer
      和光ライフサイエンスフォーラム
    • Place of Presentation
      熊本市
    • Year and Date
      2015-12-11
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] METAL COMPLEXATION ON DNA – FOR DNA STRUCTURE CONTROL AND BIOSENSING –2015

    • Author(s)
      Toshihiro Ihara
    • Organizer
      16th IUPAC International Symposium on MacroMolecular Complexes (MMC-16)
    • Place of Presentation
      Wroclaw
    • Year and Date
      2015-08-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 核酸の構造制御およびバイオセンシングへの応用2015

    • Author(s)
      井原敏博
    • Organizer
      核酸化学最前線フォーラム
    • Place of Presentation
      神戸市
    • Year and Date
      2015-07-09
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] DNA構造の動的プログラミングに基づくバイオセンシング2015

    • Author(s)
      井原敏博
    • Organizer
      第52回化学関連支部合同九州大会
    • Place of Presentation
      北九州市
    • Year and Date
      2015-06-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Book] Advances in Bioorganometallic Chemistry2019

    • Author(s)
      T. Ihara
    • Total Pages
      300
    • Publisher
      Elsevier
    • Related Report
      2017 Annual Research Report
  • [Remarks] 井原研究室ウェブサイト

    • URL

      http://www.analyticalchemistry-ihara.com

    • Related Report
      2017 Annual Research Report
  • [Remarks] Ihara Lab.@Kumamoto-U

    • URL

      http://133.95.131.186/~toshi/

    • Related Report
      2016 Annual Research Report
  • [Remarks] IHARA Lab@Kumamoto-U

    • URL

      http://133.95.131.186/~toshi/

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2022-08-26  

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