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Mechanistic Enzymology of Radical SAM Enzymes

Research Project

Project/Area Number 15H03834
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bio-related chemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

Eguchi Tadashi  東京工業大学, 理学院, 教授 (60201365)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2017: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2016: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2015: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
KeywordsラジカルSAM酵素 / 生合成 / 反応機構
Outline of Final Research Achievements

In this study, functional analysis of a radical S-adenosyl-L-methionine (SAM) dehydratase AprD4 and a methylcobalamin-dependent radical SAM methyltransferase Fom3 were performed.
A radical SAM dehydratase AprD4 and an NADPH-dependent reductase AprD3 are responsible for the C3′-deoxygenation of pseudodisaccharide paromamine in the biosynthesis of apramycin/tobramycin. AprD4 catalyzes the C3’-dehydration of paromamine via a radical-mediated reaction mechanism to give 4’-oxolividamine, which is then reduced by AprD3 with NADPH to afford lividamine. Further, the substrate specificity of this unique combination of enzymes has been investigated.
A methylcobalamin-dependent radical SAM methyltransferase Fom3 was found to catalyze the C-methylation of cytidylyl-2-hydroxyethylphosphonate to give cytidylyl-2-hydroxypropylphosphonate in the biosynthesis of a unique C-P bond containing antibiotic fosfomycin in Streptomyces.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (11 results)

All 2017 2016 2015 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Acknowledgement Compliant: 2 results) Presentation (5 results) (of which Int'l Joint Research: 3 results,  Invited: 2 results) Remarks (2 results)

  • [Journal Article] Methylcobalamin-Dependent Radical SAM C-Methyltransferase Fom3 Recognizes Cytidylyl-2-hydroxyethylphosphonate and Catalyzes the Nonstereoselective C-Methylation in Fosfomycin Biosynthesis2017

    • Author(s)
      Sato Shusuke、Kudo Fumitaka、Kim Seung-Young、Kuzuyama Tomohisa、Eguchi Tadashi
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 28 Pages: 3519-3522

    • DOI

      10.1021/acs.biochem.7b00472

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fosfomycin Biosynthesis via Transient Cytidylylation of 2-Hydroxyethylphosphonate by the Bifunctional Fom1 Enzyme2017

    • Author(s)
      Su-Hee Cho, Seung-Young Kim, Takeo Tomita, Taro Shiraishi, Jin-Soo Park, Shusuke Sato, Fumitaka Kudo, Tadashi Eguchi, Nobutaka Funa, Makoto Nishiyama, Tomohisa Kuzuyama
    • Journal Title

      ACS Chem. Biol.

      Volume: 12 Issue: 8 Pages: 2209-2215

    • DOI

      10.1021/acschembio.7b00419

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substrate Specificity of Radical S-Adenosyl-L-methionine Dehydratase AprD4 and Its Partner Reductase AprD3 in the C3′-Deoxygenation of Aminoglycoside Antibiotics2017

    • Author(s)
      Fumitaka Kudo, Takeshi Tsunoda, Makoto Takashima, Tadashi Eguchi
    • Journal Title

      J. Antibiot.

      Volume: 70 Issue: 4 Pages: 423-428

    • DOI

      10.1038/ja.2016.110

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Aminoglycoside Antibiotics: New Insights into the Biosynthetic Machinery of Old Drugs2016

    • Author(s)
      F. Kudo and T. Eguchi
    • Journal Title

      Chem. Rec.

      Volume: 16 Issue: 1 Pages: 4-18

    • DOI

      10.1002/tcr.201500210

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] ホスホマイシン生合成におけるラジカルS-アデノシル-L-メチオニンC-メチル化酵素の機能解析2017

    • Author(s)
      佐藤 秀亮・工藤 史貴・江口 正・葛山 智久
    • Organizer
      日本化学会第97春季年会
    • Place of Presentation
      慶應義塾大学 日吉キャンパス
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] ホスホマイシン生合成におけるC-メチル化機構2017

    • Author(s)
      佐藤 秀亮, Kim Seung-Young, 葛山 智久, 工藤 史貴, 江口 正
    • Organizer
      第59回天然有機化合物討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Radical SAM Enzymes involved in Natural Product Biosynthesis2017

    • Author(s)
      Tadashi Eguchi
    • Organizer
      9th US-Japan Seminar on the Biosynthesis of Natural Products
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biosynthesis of Aminoglycoside antibiotics2015

    • Author(s)
      Tadashi Eguchi
    • Organizer
      PACIFICHEM 2015, International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Reaction mechanisms of radical SAM enzymes involved in the biosynthesis of aminoglycoside antibiotics2015

    • Author(s)
      Fumitaka Kudo, Shota Hoshi, Tadashi Eguchi
    • Organizer
      PACIFICHEM 2015, International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Remarks] 江口正研究室

    • URL

      http://www.chemistry.titech.ac.jp/~eguchi/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 江口正研究室 東京工業大学理学院化学系

    • URL

      http://www.chem.titech.ac.jp/~eguchi/publications.html

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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