Gene regulation system by ternary chemical modifications of DNA, histone, and osmolyte
| Project/Area Number |
15H03840
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| Research Category |
Grant-in-Aid for Scientific Research (B)
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| Allocation Type | Single-year Grants |
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| Section | 一般 |
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| Research Field |
Bio-related chemistry
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| Research Institution | Konan University |
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Principal Investigator |
MIYOSHI Daisuke 甲南大学, フロンティアサイエンス学部, 教授 (50388758)
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| Co-Investigator(Kenkyū-buntansha) |
川内 敬子 甲南大学, フロンティアサイエンス学部, 講師 (40434138)
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| Project Period (FY) |
2015-04-01 – 2018-03-31
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| Project Status |
Completed (Fiscal Year 2017)
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| Budget Amount *help |
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2017: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2015: ¥9,490,000 (Direct Cost: ¥7,300,000、Indirect Cost: ¥2,190,000)
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|---|
| Keywords | オスモライト / ヒストン / 分子クラウディング / DNA / 熱力学 / 核酸 / がん / 浸透圧調節分子 / エピジェネティクス / 生体分子 / 癌 |
|---|
| Outline of Final Research Achievements |
In cell nucleus, DNA exists with histone proteins, which form nucleosome complex. Binding affinity between DNA and the histone proteins is one of the critical factors for epigenetic regulation of gene expression. Moreover, there are highly concentrated osomolytes inside cells, which may also affect the binding affinity of DNA with the histone proteins. Therefore, to elucidate the epigenetics, it is important to study combination effects of the epigenetic modifications on the histone proteins and on DNA, and osmolytes, on DNA structures and their thermodynamic stability.
In this project, we utilized peptides and synthetic polymers to mimic the histone tails, and TMAO and urea to mimic the osmolytes. It was found that histone-mimicking polymers drastically change DNA structures and thermodynamics. Moreover, it was found for the first time that TMAO directly binds and stabilizes DNA duplex at lower concentration, whereas it destabilizes it because of dehydration from DNA structure.
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Report
(4 results)
Research Products
(74 results)
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[Journal Article] Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes2017
Author(s)
Zhou Jun、Amrane Samir、Rosu Frederic、Salgado Gilmar F.、Bian Yunqiang、Tateishi-Karimata Hisae、Largy Eric、Korkut Dursun Nizam、Bourdoncle Anne、Miyoshi Daisuke、Zhang Jian、Ju Huangxian、Wang Wei、Sugimoto Naoki、Gabelica Valerie、Mergny Jean-Louis
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Journal Title
Journal of the American Chemical Society
Volume: 139
Issue: 23
Pages: 7768-7779
DOI
Related Report
Peer Reviewed / Int'l Joint Research
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[Journal Article] DNA G-wire formation using an artificial peptide is controlled by protease activity2017
Author(s)
Usui, K., Okada, A., Sakashita, S., Shimooka, M., Tsuruoka, T., Nakano, S., Miyoshi, D., Mashima, T., Katahira, M., Hamada, Y.
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Journal Title
Molecules
Volume: 22
Issue: 11
Pages: 1991-1991
DOI
NAID
Related Report
Peer Reviewed / Open Access
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