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Molecular mechanism of enzyme complexes catalyzing two-step reaction for Cys-tRNA synthesis

Research Project

Project/Area Number 15H04334
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionHokkaido University

Principal Investigator

Tanaka Isao  北海道大学, 先端生命科学研究院, 名誉教授 (70093052)

Co-Investigator(Kenkyū-buntansha) 姚 閔  北海道大学, 先端生命科学研究院, 教授 (40311518)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,380,000 (Direct Cost: ¥12,600,000、Indirect Cost: ¥3,780,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2015: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
KeywordsX線結晶構造解析 / tRNA修飾 / アミノアシル合成酵素 / X線結晶構造解析 / rRNA修飾 / X線結晶解析 / アミノアシル化反応 / tRNA
Outline of Final Research Achievements

For synthesizing a protein from DNA base sequence, it is necessary to correctly bind the amino acid to the transfer RNA (aminoacylation reaction), and usually the enzyme called aminoacyl tRNA synthetase (aaRS) plays its role. However, in methanogenic archaebacteria, an enzyme complex called transsulfursome (SepRS: SepCysE: SepCysS) does.
In this study, the reaction mechanism of this system was clarified using X-ray crystal structure analysis method, X-ray small angle scattering method, electron microscope observation and other biochemical methods.
Transsulfursome is thought to be the ancestral aminoacylation system. Therefore, it is expected that this research will go a step further to elucidate the mystery related to the birth of the genetic code in the future.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (16 results)

All 2017 2016 Other

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (9 results) (of which Int'l Joint Research: 5 results,  Invited: 2 results) Remarks (5 results)

  • [Journal Article] Structural basis for tRNA-dependent cysteine biosynthesis2017

    • Author(s)
      Chen Meirong、Kato Koji、Kubo Yume、Tanaka Yoshikazu、Liu Yuchen、Long Feng、Whitman William B.、Lill Pascal、Gatsogiannis Christos、Raunser Stefan、Shimizu Nobutaka、Shinoda Akira、Nakamura Akiyoshi、Tanaka Isao、Yao Min
    • Journal Title

      Nature Commun.

      Volume: 8 Issue: 1 Pages: 1521-1521

    • DOI

      10.1038/s41467-017-01543-y

    • NAID

      120006370606

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Crystallographic analysis of a subcomplex of the transsulfursome with tRNA for Cys-tRNA(Cys) synthesis2016

    • Author(s)
      Meirong Chen, Yuto Nakazawa, Yume Kubo, Nozomi Asano, Koji Kato, Isao Tanaka and Min Yao
    • Journal Title

      Acta Crystallographica Section F

      Volume: 72 Issue: 7 Pages: 569-572

    • DOI

      10.1107/s2053230x16009559

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] SAXS解析によるtranssulfursome のダイナミクス研究の事例2017

    • Author(s)
      姚閔
    • Organizer
      第4回タンパク質X線溶液散乱講習会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Structural basis of transsulfursome for Cys-tRNA(Cys) synthesis in indirect pathway2016

    • Author(s)
      Meirong Chen, Yume Kubo, Koji Kato, Yoshikazu Tanaka, Isao Tanaka, Min Yao
    • Organizer
      The 4th International Life-Science Symposium (ILSS)
    • Place of Presentation
      北海道大学学術交流会館(北海道札幌市)
    • Year and Date
      2016-11-18
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cys tRNA(Cys) synthesis requires a huge transsulfursome in Methanogenic archaea2016

    • Author(s)
      Meirong Chen, Yume Kubo, Yuto Nakazawa, Nozomi Asano, Koji Kato, Akiyoshi Nakamura, Isao Tanaka, Min Yao
    • Organizer
      The 42nd NAITO CONFERENCE on “in the Vanguard of Structural Biology: Revolutionizing Life Sciences”
    • Place of Presentation
      シャトレーゼ ガトーキングダム サッポロ(北海道札幌市)
    • Year and Date
      2016-10-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural Basis of Transsulfursome: A Huge Complex Produces Cys-tRNA(Cys) in Methanogenic Archaea2016

    • Author(s)
      Meirong Chen, Yume Kubo, Koji Kato, Akira Shinoda, Akiyoshi Nakamura, Isao Tanaka, Min Yao
    • Organizer
      The 26th tRNA Conference
    • Place of Presentation
      Jeju (Korea)
    • Year and Date
      2016-09-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] TranssulfursomeにおけるCys-tRNA(Cys) 生合成の分子基盤解明2016

    • Author(s)
      陳美容,久保結女,中澤祐人,朝野希美,加藤公児,中村彰良,田中勲,姚閔
    • Organizer
      RNAフロンティアミーティング2016
    • Place of Presentation
      ニセコ温泉郷 いこいの湯宿 いろは(北海道ニセコ町)
    • Year and Date
      2016-08-31
    • Related Report
      2016 Annual Research Report
  • [Presentation] Multidomain architecture of SepCysE confers transsulfursome flexibility to synthesize Cys-tRNA(Cys) in two-step indirect pathway2016

    • Author(s)
      Meirong Chen, Yume Kubo, Koji Kato, Yoshikazu Tanaka, Isao Tanaka, Min Yao
    • Organizer
      第53回日本生化学会北海道支部例会 日本生化学会北海道支部・日本生物物理学会北海道支部 合同シンポジウム
    • Place of Presentation
      北海道大学工学部 鈴木章ホール(北海道札幌市)
    • Year and Date
      2016-07-08
    • Related Report
      2016 Annual Research Report
  • [Presentation] Structural basis of cysteine-tRNA(Cys) synthesis in the second step by SepCysS-SepCysE2016

    • Author(s)
      Meirong Chen, Yume Kubo, Yuto Nakazawa, Nozomi Asano, Koji Kato, Akiyoshi Nakamura, Isao Tanaka, Min Yao
    • Organizer
      The 2016 joint annual meeting of the RNA Society and the RNA Society of Japan (RNA2016)
    • Place of Presentation
      京都国際会議場(京都府京都市)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular base of transsulfursome for synthesizing Cys-tRNA(Cys) by indirect pathway2016

    • Author(s)
      Min Yao
    • Organizer
      2016 Taiwan-Japan Joint Symposium of Crystallography -Frontier of Protein Crystallography-
    • Place of Presentation
      北海道大学学術交流会館(北海道札幌市)
    • Year and Date
      2016-06-23
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] SepCysE possesses non-specific tRNA binding domain2016

    • Author(s)
      Meirong Chen, Yuto Nakazawa, Yume Kubo, Nozomi Asano, Koji Kato, Yoshikazu Tanaka, Min Yao
    • Organizer
      2015年度量子ビームサイエンスフェスタ・第7回MLFシンポジウム・第33回PFシンポジウム
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-03-15
    • Related Report
      2015 Annual Research Report
  • [Remarks] 研究室のホームページ

    • URL

      http://altair.sci.hokudai.ac.jp/g6/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 研究室の研究トピックスとして本研究成果の紹介(日本語)

    • URL

      http://altair.sci.hokudai.ac.jp/g6/Topics/2017/Transulfursome.pdf

    • Related Report
      2017 Annual Research Report
  • [Remarks] 研究室の研究トピックスとして本研究成果の紹介(英語)

    • URL

      http://altair.sci.hokudai.ac.jp/g6/Topics/2017/Transsulfursome2017_English.pdf

    • Related Report
      2017 Annual Research Report
  • [Remarks] 北海道大学 X線構造生物学研究室 ホームページ

    • URL

      http://altair.sci.hokudai.ac.jp/g6/index.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 北海道大学 X線構造生物学研究室 ホームページ

    • URL

      http://altair.sci.hokudai.ac.jp/g6/

    • Related Report
      2015 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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