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Structural biology of Shigella effectors to elucidate the molecular mechanisms of substrate recognition and infection

Research Project

Project/Area Number 15H04341
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionUniversity of Hyogo

Principal Investigator

MIZUSHIMA TSUNEHIRO  兵庫県立大学, 生命理学研究科, 教授 (90362269)

Co-Investigator(Renkei-kenkyūsha) KIM Minsoo  京都大学, 白眉センター, 特定准教授 (50466835)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,380,000 (Direct Cost: ¥12,600,000、Indirect Cost: ¥3,780,000)
Fiscal Year 2017: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Keywordsエフェクター / X線結晶構造解析 / ユビキチン修飾経路 / 赤痢菌 / ユビキチンリガーゼ / 蛋白質 / 細菌 / IpaH / X線結晶構造解析
Outline of Final Research Achievements

Pathogenic bacteria such as Shigella, deliver a variety of virulence factors, called effectors, into host cells via the type III secretion system. These effectors mimic or hijack host proteins and modulate host signaling pathways to promote bacterial infection. To elucidate the molecular mechanisms of Shigella flexneri effectors such as OspI and IpaH9.8, we performed the structural and functional analyses of them. OspI deamidates of Ubc13, thereby disrupting TRAF6 activation and dampening host inflammatory responses. IpaH9.8 and IpaH1.4 possessing E3 ligase activity, dampen the NF-kappaB-mediated inflammatory response. We determined the crystal structures of deamidated Ubc13 and substrate recognition domain of IpaH9.8. These structures provide the substrate recognition and inhibition mechanisms of immune response.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (21 results)

All 2018 2017 2016 2015

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 1 results) Presentation (19 results) (of which Int'l Joint Research: 4 results,  Invited: 5 results)

  • [Journal Article] Shigella hijacks the glomulin?cIAPs?inflammasome axis to promote inflammation2018

    • Author(s)
      Suzuki Shiho、Suzuki Toshihiko、Mimuro Hitomi、Mizushima Tsunehiro、Sasakawa Chihiro
    • Journal Title

      EMBO Rep

      Volume: 19 Issue: 1 Pages: 89-101

    • DOI

      10.15252/embr.201643841

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the substrate-recognition domain of the Shigella E3 ligase IpaH9.82016

    • Author(s)
      K Takagi, et al
    • Journal Title

      Acta Cryst

      Volume: F72 Issue: 4 Pages: 269-275

    • DOI

      10.1107/s2053230x16002715

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] ユビキチン修飾経路の新しい制御メカニズムの解析2017

    • Author(s)
      水島恒裕
    • Organizer
      さきがけ「生体分子の形と機能」10年間の展開
    • Related Report
      2017 Annual Research Report
  • [Presentation] Structural Insight into the Molecular Mechanisms of Bacterial Effectors2017

    • Author(s)
      Mizushima, T
    • Organizer
      2nd Joint International Symposium of NSRRC, Taiwan, IPR, Osaka University, Japan, Establishment of Structural Biology Network in Asia and Oceania
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] バクテリアの感染戦略:エフェクターによる宿主防御経路の阻害機構2017

    • Author(s)
      水島恒裕
    • Organizer
      県立健康生活科学研究所・理学部合同研究発表会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] ユビキチン-プロテアソーム経路による生命制御の分子メカニズム2017

    • Author(s)
      水島恒裕
    • Organizer
      徳島大学薬学部講演会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Structure and substrate recognition mechanism of IpaH9.8 LRR.2016

    • Author(s)
      Takagi, K., Kim, M., Sasakawa, C., Mizushima, T.
    • Organizer
      The Annual Evaluation Conference of the Leading Program, University of Hyogo for the School Year of 2015
    • Place of Presentation
      先端科学技術支援センター (兵庫・赤穂郡上郡町)
    • Year and Date
      2016-03-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Structural Analysis of Reaction Mechanism of Shigella flexneri effector OspI2016

    • Author(s)
      Nishide, A., Kim, M., Takagi, K., Sasakawa, C., Mizushima, T.
    • Organizer
      The Annual Evaluation Conference of the Leading Program, University of Hyogo for the School Year of 2015
    • Place of Presentation
      先端科学技術支援センター (兵庫・赤穂郡上郡町)
    • Year and Date
      2016-03-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] 赤痢菌エフェクターOspI触媒機構の解明2016

    • Author(s)
      西出旭, Kim Minsoo, 高木賢治, 古田徹郎, 笹川千尋, 水島恒裕
    • Organizer
      第16回 日本蛋白質科学会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] 赤痢菌エフェクターIpaH9.8によるNEMO認識機構の解析2016

    • Author(s)
      高木賢治, 大津彩織, Kim Minsoo, 水島恒裕
    • Organizer
      第16回 日本蛋白質科学会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] 赤痢菌エフェクター IpaH1880 反応機構の解析2016

    • Author(s)
      西出旭, Minsoo Kim, 水島恒裕
    • Organizer
      新学術領域「ユビキチンネオバイオロジー」領域班会議
    • Related Report
      2016 Annual Research Report
  • [Presentation] 赤痢菌エフェクターOspIによるTRAF6阻害機構の構造生物学解析2016

    • Author(s)
      高木賢治, 西出旭, Kim Minsoo, 笹川千尋, 水島恒裕
    • Organizer
      新学術領域「ユビキチンネオバイオロジー」領域班会議
    • Related Report
      2016 Annual Research Report
  • [Presentation] 構造学的手法を用いた赤痢菌エフェクター IpaH ファミリーの反応機構の解析2016

    • Author(s)
      西出旭, Minsoo Kim, 桑原直之, 加藤龍一, 笹川千尋, 水島恒裕
    • Organizer
      第39回日本分子生物学会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] 病原細菌エフェクターによる宿主防御経路阻害の分子メカニズム2016

    • Author(s)
      水島恒裕
    • Organizer
      神戸大学/兵庫県立大学間交流セミナー
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Structure and substrate recognition mechanism of IpaH9.8 LRR2015

    • Author(s)
      Takagi, K., Kim, M.., Mizushima, T.
    • Organizer
      3rd International Picobiology Institute Symposium Structural and biological studies on pathogenic and therapeutic targets
    • Place of Presentation
      先端科学技術支援センター (兵庫・赤穂郡上郡町)
    • Year and Date
      2015-12-08
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural Analysis of Reaction Mechanism of Shigella flexneri effector OspI2015

    • Author(s)
      Nishide, A., Kim, M., Takagi, K., Sasakawa, C., Mizushima, T.
    • Organizer
      3rd International Picobiology Institute Symposium Structural and biological studies on pathogenic and therapeutic targets
    • Place of Presentation
      先端科学技術支援センター (兵庫・赤穂郡上郡町)
    • Year and Date
      2015-12-08
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural analysis of the recognition mechanism of NEMO by shigella effector IpaH9.82015

    • Author(s)
      Otsu, S., Takagi, K., Kim, M., Mizushima, T.
    • Organizer
      3rd International Picobiology Institute Symposium Structural and biological studies on pathogenic and therapeutic targets
    • Place of Presentation
      先端科学技術支援センター (兵庫・赤穂郡上郡町)
    • Year and Date
      2015-12-08
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 赤痢菌エフェクタータンパク質IpaH9.8によるNEMOの認識機構の解析2015

    • Author(s)
      大津彩織,高木賢治, Kim Minsoo, 水島恒裕
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      大阪府立大学 (大阪・堺市)
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] 赤痢菌エフェクターOspI触媒機構の解明2015

    • Author(s)
      西出旭,高木賢治, Kim Minsoo, 水島恒裕
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      大阪府立大学 (大阪・堺市)
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] 赤痢菌エフェクターOspIによる 免疫阻害機構の解析2015

    • Author(s)
      水島恒裕
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      大阪大学蛋白研(大阪・吹田市)
    • Year and Date
      2015-08-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 赤痢菌エフェクターIpaH9.8基質認識ドメインのX線結晶構造解析2015

    • Author(s)
      高木賢治、Kim Minsoo、水島恒裕
    • Organizer
      第15回 日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール(徳島・徳島市)
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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