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Structure basis of lipophilic ligand binding of membrane protein involving in lipid mediator biosynthesis

Research Project

Project/Area Number 15H04343
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Ago Hideo  国立研究開発法人理化学研究所, 放射光科学総合研究センター, 専任研究員 (70360477)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2017: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2015: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
KeywordsProtein crystallography / membrane protein / lipid mediator / 膜タンパク質 / 放射光構造生物 / 脂質メディエータ / X線結晶構造解析 / 放射光 / 蛋白質 / 膜蛋白質
Outline of Final Research Achievements

Structure basis of lipophilic ligand recognition of human membrane proteins involving in lipid mediator biosynthesis was the subject of this study. The membrane proteins utilize hydrophilic GSH and lipophilic arachidonic acid metabolites. In comparison to GSH whose binding architecture was elucidated in detail by X-ray crystallography, limited information about lipophilic ligand was available. This study used two methods to get the lipophilic ligand / protein complex, one was the soaking method on the crystals grown in surfo and the other was the co-crystallization in meso. In addition to making lipophilic ligand / protein complex, a method spreading thinly a highly viscus vehicle in which a large number of micro-crystals were dispersed was developed. Crystal overlap along X-ray beam causes the double hit which makes the diffraction image unavailable. The thin spreading reduces the crystal overlap; thus, resulting in the efficient data collection from micro crystals.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (3 results)

All 2017

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (1 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Protein microcrystallography using synchrotron radiation2017

    • Author(s)
      Yamamoto Masaki、Hirata Kunio、Yamashita Keitaro、Hasegawa Kazuya、Ueno Go、Ago Hideo、Kumasaka Takashi
    • Journal Title

      IUCrJ

      Volume: 4 Issue: 5 Pages: 529-539

    • DOI

      10.1107/s2052252517008193

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography2017

    • Author(s)
      Hasegawa Kazuya、Yamashita Keitaro、Murai Tomohiro、Nuemket Nipawan、Hirata Kunio、Ueno Go、Ago Hideo、Nakatsu Toru、Kumasaka Takashi、Yamamoto Masaki
    • Journal Title

      Journal of Synchrotron Radiation

      Volume: 24 Issue: 1 Pages: 29-41

    • DOI

      10.1107/s1600577516016362

    • NAID

      120005947170

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Fixed target serial crystallography at SACLA2017

    • Author(s)
      Masaki Yamamoto, Hideo Ago, Kunio Hirata, Keitaro Yamashita, Go Ueno, Minoru Kubo, Seiki Baba, Kazuya Hasegawa, Takashi Kumasaka, Atsuhiro Shimada, Kyoko Shinzawa-Itoh, Tomitake Tsukihara, Shinya Yoshikawa, Michihiro Suga, Fusamichi Akita, Jian-Ren Shen
    • Organizer
      ACA2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2025-11-17  

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