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Investigation for novel circadian clock reactions independent of the transcription-translation feedback loop of clock genes

Research Project

Project/Area Number 15H04349
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionNagoya University

Principal Investigator

Take Ohkawa  名古屋大学, 生命農学研究科, 准教授 (30432230)

Co-Investigator(Kenkyū-buntansha) 望田 啓子 (桑田啓子)  名古屋大学, トランスフォーマティブ生命分子研究所, 特任助教 (70624352)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,380,000 (Direct Cost: ¥12,600,000、Indirect Cost: ¥3,780,000)
Fiscal Year 2017: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2016: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2015: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Keywords概日時計 / ケミカルバイオロジー / 翻訳後修飾 / 概日リズム / プロテオミクス / プロテオーム / 蛋白質 / 質量分析 / 自律振動
Outline of Final Research Achievements

The widely accepted models for circadian clocks are based on transcriptional-translational negative feedback loops composed of circadian clock genes. However, some important aspects, such as how the periods are adjusted around 24 h and how the phase of the rhythms are determined, are not fully incorporated into these models. On the other hand, there are several examples of protein posttranscriptional modification rhythms independent of the feedback loops, though their exact roles in the circadian clock systems are still unknown. In this study we tried to elucidate these points by proteomic and chemical biology approach. We obtained compounds that affect period and phase and the potential candidates of their target proteins. We also set up the system to study posttranslational modification rhythms including phosphorylation. By these bidirectional approaches, we are now trying to understand the whole circadian clock systems.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (20 results)

All 2018 2017 2016 2015

All Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (11 results) (of which Int'l Joint Research: 1 results,  Invited: 3 results) Book (1 results)

  • [Journal Article] Identification of circadian clock modulators from existing drugs2018

    • Author(s)
      T. Katherine Tamai, Yusuke Nakane, Wataru Ota, Akane Kobayashi, Masateru Ishiguro, Naoya Kadofusa, Keisuke Ikegami, Kazuhiro Yagita, Yasufumi Shigeyoshi, Masaki Sudo, Taeko Nishiwaki-Ohkawa, Ayato Sato, & Takashi Yoshimura
    • Journal Title

      EMBO Molecular Medicine

      Volume: - Issue: 5

    • DOI

      10.15252/emmm.201708724

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular basis for regulating seasonal reproduction in vertebrates2016

    • Author(s)
      Nishiwaki-Ohkawa T, Yoshimura T
    • Journal Title

      Journal of Endocrinology

      Volume: 229 Issue: 3 Pages: R117-R127

    • DOI

      10.1530/joe-16-0066

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Combination of synthetic chemistry and live-cell imaging identified a rapid cell division inhibitor in tobacco and Arabidopsis thaliana2016

    • Author(s)
      Nambo, M., Kurihara, D., Yamada, T., Nishiwaki-Ohkawa, T., Kadofusa, N., Kimata, Y., Kuwata, K., Umeda, M. and Ueda, M.
    • Journal Title

      Plant Cell Physiol.

      Volume: 57 Issue: 11 Pages: 2255-2268

    • DOI

      10.1093/pcp/pcw140

    • NAID

      120006220249

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Peptide Nucleic Acid with a Lysine Side Chain at the β-Position: Synthesis and Application for DNA Cleavage2016

    • Author(s)
      Toru Sugiyama, Keiko Kuwata, Yasutada Imamura, Yosuke Demizu, Masaaki Kurihara, Masashi Takano, and Atsushi Kittaka
    • Journal Title

      Chemical and Pharmaceutical Bulletin

      Volume: 64 Issue: 7 Pages: 817-823

    • DOI

      10.1248/cpb.c16-00191

    • NAID

      130005160035

    • ISSN
      0009-2363, 1347-5223
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A set of organelle-localizable reactive molecules for mitochondrial chemical proteomics in living cells and brain tissues2016

    • Author(s)
      Yuki Yasueda, Tomonori Tamura, Alma Fujisawa, Keiko Kuwata, Shinya Tsukiji, Shigeki Kiyonaka, Itaru Hamachi
    • Journal Title

      Journal of the American Chemical Society

      Volume: 138 Issue: 24 Pages: 7592-7592

    • DOI

      10.1021/jacs.6b02254

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phosphorylation of the C Terminus of RHD3 Has a Critical Role in Homotypic ER Membrane Fusion in Arabidopsis.2016

    • Author(s)
      Ueda, H., Yokota, E., Kuwata, K., Kutsuna, N., Mano, S., Shimada, T., Tamura, K., Stefano, G., Fukao, Y., Brandizzi, F., Shimmen, T., Nishimura, M., Hara-Nishimura, I.
    • Journal Title

      Plant Physiol.

      Volume: 170 Issue: 2 Pages: 867-880

    • DOI

      10.1104/pp.15.01172

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Electrochemical Detection of Circadian Redox Rhythm in Cyanobacterial Cells via Extracellular Electron Transfer2015

    • Author(s)
      K. Nishio, S. Kato, S. Izawa, T. Pornpitra, T. Nishiwaki-ohkawa, K. Hashimoto, S. Nakanishi
    • Journal Title

      Plant and Cell Physiology

      Volume: 56 Issue: 6 Pages: 1053-1058

    • DOI

      10.1093/pcp/pcv066

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] C-H activation generates period-shortening molecules that target crptochrome in the mammalian circadian clock2015

    • Author(s)
      Tsuyoshi Oshima, Iori Yamanaka, Anupriya Kumar, Junichiro Yamaguchi, Taeko Nishiwaki-Ohkawa, Kei Muto, Rika Kawamura, Tsuyoshi Hirota, Kazuhiro Yagita, Stephan Irle, Steve A. Kay Takashi Yoshimura, Kenichiro Itami
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 54 Pages: 7193-7197

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Presentation] グループディスカッション「やさしい質量分析」: ・安定して質量分析装置を使用するために必要な日常的な留意点 ・分析結果の質に影響をおよぼす容器、溶媒、イオン化の選択 ・プロダクトイオンスペクトル解釈法 ・リン酸化ペプチド分析法 ・質量分析用語2017

    • Author(s)
      阿久津弘明,浅川直樹,岡征子,桑田啓子,津川裕司,西川嘉子,堀山志朱代,三宅里佳,吉野健一
    • Organizer
      第44回BMSコンファレンス
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 新規イオン化法DIUTHAMEによるMALDI-TOFMS測定2017

    • Author(s)
      桑田啓子,伊藤佳世子,大村孝幸,小谷政弘,内藤康秀
    • Organizer
      日本質量分析学会第65回質量分析総合討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 新規イオン化法DIUTHAMEを用いたイメージング質量分析手法の開発2017

    • Author(s)
      伊藤佳世子,大村孝幸,小谷政弘,内藤康秀,桑田啓子
    • Organizer
      第35回メディシナルケミストリーシンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 甲状腺ホルモンアナログの開発2016

    • Author(s)
      大川妙子、加藤優季、伊藤有花、Muhammad Yar、Zachary Ariki、 Anupriya Kumar、 Jacky Yim、 佐藤綾人、南保正和、Stephan Irle、 Cathleen Crudden、吉村崇
    • Organizer
      第23回日本時間生物学会学術大会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2016-11-12
    • Related Report
      2016 Annual Research Report
  • [Presentation] 哺乳類の概日リズムの周期を延長する化合物の探索2016

    • Author(s)
      小林茜、Katherine Tamai、上園悠真、佐藤綾人、大松亨介、大川妙子、大井貴史、吉村崇
    • Organizer
      第23回日本時間生物学会学術大会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2016-11-12
    • Related Report
      2016 Annual Research Report
  • [Presentation] ITbM化合物ライブラリーを用いた概日リズム調節分子の探索2016

    • Author(s)
      石黒将照、小林茜、上園悠真、角房直哉、佐藤綾人、大松亨介、大川妙子、大井貴史、吉村崇
    • Organizer
      第23回日本時間生物学会学術大会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2016-11-12
    • Related Report
      2016 Annual Research Report
  • [Presentation] Highly Efficient Enrichment of Phosphopeptide by use of Automated Technology.2016

    • Author(s)
      Keiko Kuwata, Kayoko Itou, Keiko Takahashi, Masahiko Kinoshita, Tomoyuki Hosono, Hiroyuki Fukuda
    • Organizer
      JPrOS 2016 (14th JHUPO Conference)
    • Place of Presentation
      東京
    • Year and Date
      2016-07-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 哺乳類の概日リズムの周期を調節する化合物の探索2015

    • Author(s)
      大川(西脇)妙子、小林茜、山中衣織、佐藤綾人、大島豪、Anupriya Kumar、山口潤一郎、川邑里佳、武藤慶、廣田豪、八木田和弘、Steve A. Kay、Stephan Irle、伊丹健一郎、吉村崇
    • Organizer
      第22回日本時間生物学会学術大会
    • Place of Presentation
      東京大学 本郷キャンパス
    • Year and Date
      2015-11-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] TbMの紹介およびFAB-TOFとMALDI-oaTOFの測定2015

    • Author(s)
      桑田啓子
    • Organizer
      第6回質量分析中部談話会
    • Place of Presentation
      名古屋大学 東山キャンパス
    • Year and Date
      2015-10-23
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Miniaturization of MULTUM-FAB mass spectrometer and accurate mass measurement2015

    • Author(s)
      Keiko Kuwata, Hirofumi Nagao, Shinichi Miki
    • Organizer
      The 63rd Annual Conference on Mass Spectrometry
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2015-06-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] ケミカルバイオロジーを牽引する質量分析~有機合成からタンパク質相互作用構造解析まで~2015

    • Author(s)
      桑田啓子
    • Organizer
      第81回北陸質量分析談話会
    • Place of Presentation
      福井県立大学 福井キャンパス
    • Year and Date
      2015-06-06
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Book] Photoaffinity Labeling for Structural Probing Within Protein2017

    • Author(s)
      Gen Tanaka, Yoshimasa Kawaguchi, Keiko Kuwata, Toshihide Takeuchi, Ikuhiko Nakase, Shiroh Futaki
    • Total Pages
      265
    • Publisher
      Springer Japan
    • ISBN
      9784431565680
    • Related Report
      2017 Annual Research Report

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Published: 2015-04-16   Modified: 2022-11-04  

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