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Elucidation of translational regulatory mechanism by RNA-protein complex

Research Project

Project/Area Number 15H04358
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

Funatsu Takashi  東京大学, 大学院薬学系研究科(薬学部), 教授 (00190124)

Co-Investigator(Renkei-kenkyūsha) OKABE Kohki  東京大学, 大学院薬学系研究科, 助教 (20455398)
IIZUKA Ryo  東京大学, 大学院薬学系研究科, 助教 (90541954)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2017: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2015: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Keywords1分子計測(SMD) / ナノバイオ / 蛋白質 / 1分子計測(SMD) / 光ピンセット / リボソーム / 1分子生理学・生化学 / 1分子イメージング / ナノ計測 / 1分子計測(SMD)
Outline of Final Research Achievements

1. Fluorescently labeled miRNA precursors were microinjected into a cell. They were matured by endogenous biosynthetic pathway and they were incorporated into RISC. Single-molecule imaging technique revealed that miRNAs move on actin filaments.
2. Localization of mRNAs labeled with Cy5-linear antisense DNA probe was investigated under the stress conditions. Super-resolution microcopy revealed that mRNAs are not uniformly present in the stress granule (SG) but are accumulated to form high density regions with a diameter of about 100 nm.
3. The lifetimes of translational arrest of SecM mutants, whose amino acids outside ribosome were partially truncated, were investigated. Amino acid residues 57-73 and 57-98 contributed to the stabilization of translational arrest.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (46 results)

All 2017 2016 2015 Other

All Journal Article (5 results) (of which Peer Reviewed: 3 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (40 results) (of which Int'l Joint Research: 10 results,  Invited: 6 results) Remarks (1 results)

  • [Journal Article] マイクロ・ナノデバイスを用いた生体分子の機能解析と有用遺伝子の探索・回収2017

    • Author(s)
      藤井聡一郎、中村和貴、飯塚怜、船津高志
    • Journal Title

      Molecular Electronics and Bioelectronics

      Volume: 28 Pages: 165-168

    • Related Report
      2017 Annual Research Report
  • [Journal Article] 全反射蛍光顕微鏡による細胞膜受容体MPL二量体の1分子イメージング2017

    • Author(s)
      坂本明彦、船津高志
    • Journal Title

      生体の科学

      Volume: 68 Pages: 386-387

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Live-cell single-molecule imaging of the cytokine receptor MPL for analysis of dynamic dimerization2016

    • Author(s)
      *Sakamoto A, Tsukamoto T, Furutani Y, Sudo Y, Shimada K, Tomita A, Kiyoi H, Kato T, Funatsu T.
    • Journal Title

      J. Mol. Cell Biol.

      Volume: 8 Issue: 6 Pages: 553-555

    • DOI

      10.1093/jmcb/mjw027

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chaperonin GroEL uses asymmetric and symmetric reaction cycles in response to the concentration of non-native substrate proteins2016

    • Author(s)
      Ryo Iizuka, Takashi Funatsu
    • Journal Title

      Biophysics and Physicobiology

      Volume: 13 Issue: 0 Pages: 63-69

    • DOI

      10.2142/biophysico.13.0_63

    • NAID

      130005148429

    • ISSN
      2189-4779
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Culture-independent method for identification of microbial enzyme-encoding genes by activity-based single-cell sequencing using a water-in-oil microdroplet platform2016

    • Author(s)
      Kazuki Nakamura, Ryo Iizuka, Shinro Nishi, Takao Yoshida, Yuji Hatada, Yoshihiro Takaki, Ayaka Iguchi, Dong Hyun Yoon, Tetsushi Sekiguchi, Shuichi Shoji and Takashi Funatsu
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 22259-22259

    • DOI

      10.1038/srep22259

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 液滴を利用したバイオマス分解酵素産生微生物の探索法の開発2017

    • Author(s)
      鴫原永之、飯塚怜、川久保渉、尹棟鉉、関口哲志、庄子習一、船津高志
    • Organizer
      第17回東京大学生命科学シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] SecM翻訳途上鎖のリボソーム外領域による翻訳アレスト安定化機構の解明2017

    • Author(s)
      牟田幹悠、飯塚怜、船津高志
    • Organizer
      第17回東京大学生命科学シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] Single-molecule observation of actin polymerizationusing linear zero-mode waveguides2017

    • Author(s)
      Soichiro Fujii, Ryo Iizuka, Masamichi Yamamoto, Makoto Tsunoda, Takashi Tanii, Takashi Funatsu
    • Organizer
      Joint Symposium on Bioimaging between Singapore and Japan
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of a method of heating a single cell using gold nanoparticles2017

    • Author(s)
      Takaaki Honda, Kohki Okabe, Takashi Funatsu
    • Organizer
      Joint Symposium on Bioimaging between Singapore and Japan
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Identification of residues in SecM important for stabilizing translation arrest2017

    • Author(s)
      Takashi Funatsu, Mikihisa Muta, Ryo Iizuka
    • Organizer
      nternational Symposium on Protein Quality Control
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Culture-Independent Method for Identification of Microbial Enzyme-Encoding Genes by Single-Cell Sequencing Using a Water-in-oil Microdroplet Platform2017

    • Author(s)
      Kazuki Nakamura, Ryo Iizuka, Shinro Nishi, Takao Yoshida, Yuji Hatada, Yoshihiro Takaki, Ayaka Iguchi, Dong H. Yoon, Tetsushi Sekiguchi, Shuichi Shoji, TakashiFunatsu
    • Organizer
      Single-Cell Biophysics: Measurement, Modulation, and Modeling
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Intracellular local temperature as a novel variable in cell biology2017

    • Author(s)
      Kohki Okabe, Masahiro Takinoue, Kazuhito V. Tabata, Takashi Funatsu
    • Organizer
      The joint 19th International Union of Pure and Applied Biophysics (IUPAB) and 11th European Biophysical Societies' Association (EBSA) Congress
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Intracellular local termogemnesis initiates stress granule formation2017

    • Author(s)
      Shi Beini, Kouki Okabe, Takashi Funatsu
    • Organizer
      The joint 19th International Union of Pure and Applied Biophysics (IUPAB) and 11th European Biophysical Societies' Association (EBSA) Congress
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] マイクロ・ナノデバイスを用いた生体分子の機能解析と有用遺伝子の探索・回収2017

    • Author(s)
      船津高志
    • Organizer
      新分野開拓研究会「有機・バイオエレクトロニクスにおける先端計測技術の進展」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 簡便かつ迅速にマイクロRNAのプロファイリングを実現する2017

    • Author(s)
      飯塚怜、土屋章一、上野太郎、一木隆範、船津高志
    • Organizer
      第30回バイオメディカル分析科学シンポジウム(BMAS2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 蛍光分子の明滅計測による細胞内微小環境のマルチモーダルイメージング2017

    • Author(s)
      高田涼子、岡部弘基、菅原皓、船津高志
    • Organizer
      第30回バイオメディカル分析科学シンポジウム(BMAS2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 環境中の微生物を培養することなく「見える化」して酵素遺伝子を取得する2017

    • Author(s)
      飯塚怜、中村和貴、西真郎、吉田尊雄、秦田勇二、高木善弘、井口彩香、尹棟鉉、関口哲志、庄子習一、船津高志
    • Organizer
      第26回日本バイオイメージング学会学術集会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Single-molecule analysis of actin polymerization using linear zero-mode waveguides2017

    • Author(s)
      Soichiro Fujii, Ryo Iizuka, Masamichi Yamamoto, Makoto Tsunoda, Takashi Tanii, Takashi Funatsu
    • Organizer
      第26回日本バイオイメージング学会学術集会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Intercellular temperature measurement during RNA granule formation2017

    • Author(s)
      Beini Shi, Kohki kabe, Takashi Funatsu
    • Organizer
      第26回日本バイオイメージング学会学術集会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Investigating the contribution of microtubules on intracellular temperature variation2017

    • Author(s)
      Takashi Yanagi, Kohki Okabe, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Photo-control of the ribosome movement along mRNA using a reversible photo-crosslinking probe2017

    • Author(s)
      Shunsuke Yamashiro, Ryo Iizuka, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Action of release factors on the stalled ribosome during translation of TnaC2017

    • Author(s)
      Tomoki Shinozawa, Ryo Iizuka, Zhuohao Yang, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ntracellular temperature measurement during RNA granule formation2017

    • Author(s)
      Beini Shi, Kohki Okabe, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Development of a method of local heating a single cell using gold nanoparticles2017

    • Author(s)
      Takaaki Honda, Kohki Okabe, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Single-molecule analysis of actin polymerization mechanism using linear zero-mode waveguides2017

    • Author(s)
      Soichiro Fujii, Ryo Iizuka, Masamichi Yamamoto, Makoto Tsunoda, Takashi Tanii, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Microdroplet-based screening method for microbes producing polymer-degrading enzymes2017

    • Author(s)
      Kai Saito, Ryo Iizuka, Eiji Shigihara, Wataru Kawakubo, Dong Hyun Yoon, Tetsuji Sekiguchi, Shuichi Shoji, Yuji Hatada, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Investigating contribution of transcription to temperature in nucleus2017

    • Author(s)
      Shunsuke Takeda, Kohki Okabe, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Development of an automated microarray system for rapid microRNA profiling2017

    • Author(s)
      Ryo Iizuka, Shoichi Tsuchiya, Taro Ueno, Takanori Ichiki, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Investigating molecular mechanism of intracellular temperature dependent cell functions2017

    • Author(s)
      Yu Bi, Kohki Okabe, Takashi Funatsu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 1蛍光分子の明滅計測による細胞内微小環境のマルチモーダルイメージング2017

    • Author(s)
      高田涼子、岡部弘基、菅原皓、船津高志
    • Organizer
      生命科学系学会合同年次大会(ConBio2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 細胞内微小空間における温度の計測と操作から解明する温度シグナリング2017

    • Author(s)
      岡部弘基、時ベイニ、船津高志
    • Organizer
      生命科学系学会合同年次大会(ConBio2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] Photo-control of the ribosome movement along mRNA using a reversible phot-cross-linking probe2016

    • Author(s)
      Shunsuke Yamashiro, Ryo Iizuka, Takashi Funatsu
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場、つくば市、茨城県
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Intercellular local thermogenesis initiates stress granule formation2016

    • Author(s)
      Beini Shi, Kohki Okabe, Takashi Funatsu
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場、つくば市、茨城県
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Nanoscle fluorescence imaging endogenous mRNAs in stress granules2016

    • Author(s)
      Ko Sugawara, Kohki Okabe, Takashi Funatsu
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場、つくば市、茨城県
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Investigating initiation mechanism of stress granule formation by tracking single mRNA particles2016

    • Author(s)
      Masamichi Imaseki, Ko Sugawara, Kohki Okabe, Takashi Funatsu
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場、つくば市、茨城県
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Nanoscle investigation of mRNA localization and dynamics in stress granule2016

    • Author(s)
      Ko Sugawara, Kouhi Okabe, Takashi Funatsu
    • Organizer
      情報計算化学生物学会(CBI学会)2016年大会
    • Place of Presentation
      タワーホール船堀、江戸川区、東京都
    • Year and Date
      2016-10-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] Development of fluorescent thermometers for mapping intercellular temperature2016

    • Author(s)
      Takashi Funatsu, Kohki Okabe
    • Organizer
      The 12th IUPAC International Conference on Novel Materials and their Synthesis (NMS-XII)
    • Place of Presentation
      Huna Agricultural University, Changsha, China
    • Year and Date
      2016-10-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 1分子力学測定によるSecM 翻訳アレスト解除機構の解析2016

    • Author(s)
      楊倬皓、飯塚怜、船津高志
    • Organizer
      第4回Ribosome Meeting
    • Place of Presentation
      大阪医科大学、高槻市、大阪府
    • Year and Date
      2016-09-17
    • Related Report
      2016 Annual Research Report
  • [Presentation] Single-molecule fluorescence imaging by zero-mode waveguides2016

    • Author(s)
      Takashi Funatsu
    • Organizer
      Energy, Material & Nanotechnology Meeting On Light Matter Interactions
    • Place of Presentation
      Peninsula Excelsior Hotel, Singapore
    • Year and Date
      2016-05-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Live-cell single-molecule imaging of endogenous mRNA in stress granules2016

    • Author(s)
      Ko Sugawara, Kohki Okabe, Takashi Funatsu
    • Organizer
      The 60th Annual Meeting of the Biophysical Society
    • Place of Presentation
      Los Angeles (USA)
    • Year and Date
      2016-02-27
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The mechanism of stress granule formation induced by intracellular local thermogenesis2016

    • Author(s)
      Beini Shi, Kohki Okabe, Takashi Funatsu
    • Organizer
      The 60th Annual Meeting of the Biophysical Society
    • Place of Presentation
      Los Angeles (USA)
    • Year and Date
      2016-02-27
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 3つの生命現象を見えるようにする挑戦:細胞温度、アクチン重合、ストレス顆粒2016

    • Author(s)
      船津高志
    • Organizer
      レーザ顕微鏡研究会 第42回講演会(SLM-42)
    • Place of Presentation
      理化学研究所和光キャンパス、和光市、埼玉県
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] SecMによる翻訳停止の分子メカニズム2015

    • Author(s)
      楊倬皓、飯塚怜、郭遠芳、山城竣介、船津高志
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県・神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Study on the molecular mechanism of translation arrest by SecM2015

    • Author(s)
      Zhuohao Yang, Ryo Iizuka, Yuanfang Guo, Takashi Funatsu
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学 角間キャンパス(石川県・金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Design and evaluation of potent antisense probes for imaging individual endogenous mRNA in live cells2015

    • Author(s)
      Shunsuke Takeda, Kohki Okabe, Takashi Funatsu
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学 角間キャンパス(石川県・金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Remarks] 生体分析化学教室 研究業績

    • URL

      http://www.f.u-tokyo.ac.jp/~funatsu/jp/publication.html

    • Related Report
      2017 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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