• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Exploring of a new molecular motor in archaeal flagella

Research Project

Project/Area Number 15H04364
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionGakushuin University

Principal Investigator

Nishizaka Takayuki  学習院大学, 理学部, 教授 (40359112)

Project Period (FY) 2015-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2018: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2017: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Keywordsアーキア / 分子モーター / 光学顕微鏡 / アーキアべん毛 / アーキアラ / ハロアーキア / IV型分泌装置 / ATP駆動型回転モーター / ハロバクテリウム / クロスカイモグラフィー / クロス・カイモグラフィー / archaella / 遊泳運動 / 回転分子モーター / アーキアモーター / archaea / Halobacterium salinarum
Outline of Final Research Achievements

Motile archaea swim using a rotary filament, the archaellum, a surface appendage that resembles bacterial flagella structurally. Little is known about the mechanism by which archaella produce motility. In a series of studies supported by this grant, we characterized archaellar function in the model organism Halobacterium salinarum. Three-dimensional tracking of quantum dots enabled visualization of the left-handed corkscrewing of archaea in detail. An advanced analysis method was developed and revealed a right-handed helical structure of archaella with a rotation speed of 23 Hz. We also determined motor torque by imposition of various loads on archaella; markers of different sizes were attached to single archaella, and their trajectories were quantified. We show that rotation slows as the viscous drag of markers increases, but torque remains constant at 160 pN nm independent of rotation speed. A new and general model for the mechanism of ATP-driven rotary motors are finally suggested.

Academic Significance and Societal Importance of the Research Achievements

分子モーターは化学エネルギーを力学運動に変換する機能を持つ蛋白質である。究極のナノマシンであるという認識から、モーターの研究はここ20年で飛躍的な進歩を遂げたが、アーキア遊泳を生み出す装置は手つかずのまま残されていた。この分子メカニズムは、細菌学のみならず生物物理・進化・タンパク質科学からも注目すべき課題であるはずだが、培養条件や実験の再現性の難しさから、世界的に見てもドイツの1グループを除いて大きな進展は見られなかったのである。本課題では、遊泳の仕組みを分子メカニズムにまで踏み込んで明らかにすることに成功した。生物物理においてアーキアモーターという新しい研究分野が開拓されたことになる。

Report

(5 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (40 results)

All 2019 2018 2017 2016 2015 2014

All Journal Article (18 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 17 results,  Open Access: 13 results,  Acknowledgement Compliant: 5 results) Presentation (21 results) (of which Int'l Joint Research: 15 results,  Invited: 15 results) Book (1 results)

  • [Journal Article] Structural Biology, ASB/ABA meeting, Melbourne2019

    • Author(s)
      Sani Marc-Antoine、Nishizaka Takayuki
    • Journal Title

      Biophysical Reviews

      Volume: NA Issue: 3 Pages: 275-276

    • DOI

      10.1007/s12551-019-00518-1

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Single-molecule pull-out manipulation of the shaft of the rotary motor F1-ATPase2019

    • Author(s)
      Naito Tatsuya M.、Masaike Tomoko、Nakane Daisuke、Sugawa Mitsuhiro、Okada Kaoru A.、Nishizaka Takayuki
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41598-019-43903-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of zoospore type IV pili in Actinoplanes missouriensis2019

    • Author(s)
      Kimura Tomohiro、Tezuka Takeaki、Nakane Daisuke、Nishizaka Takayuki、Aizawa Shin-Ichi、Ohnishi Yasuo
    • Journal Title

      Journal of Bacteriology

      Volume: in press Issue: 14

    • DOI

      10.1128/jb.00746-18

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Circular orientation fluorescence emitter imaging (COFEI) of rotational motion of motor proteins2018

    • Author(s)
      Mitsuhiro Sugawa, Tomoko Masaike, Nagisa Mikami, Shin Yamaguchi, Keitaro Shibata, Kei Saito, Fumihiko Fujii, Yoko Y Toyoshima, Takayuki Nishizaka, Junichiro Yajima.
    • Journal Title

      Biochemical and biophysical research communications

      Volume: 504 Issue: 4 Pages: 709-714

    • DOI

      10.1016/j.bbrc.2018.08.178

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Detailed analyses of stall force generation in Mycoplasma mobile gliding.2018

    • Author(s)
      Mizutani M, Tulum I, Kinosita Y, Nishizaka T and Miyata M
    • Journal Title

      Biophysical Journal

      Volume: 114 Issue: 6 Pages: 1411-9

    • DOI

      10.1016/j.bpj.2018.01.029

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cross-kymography analysis to simultaneously quantify the function and morphology of the archaellum2018

    • Author(s)
      Kinosita Yoshiaki、Nishizaka Takayuki
    • Journal Title

      Biophysics and Physicobiology

      Volume: 15 Issue: 0 Pages: 121-128

    • DOI

      10.2142/biophysico.15.0_121

    • NAID

      130006733966

    • ISSN
      2189-4779
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Linear motor driven-rotary motion of a membrane-permeabilized ghost in Mycoplasma mobile2018

    • Author(s)
      Kinosita Yoshiaki、Miyata Makoto、Nishizaka Takayuki
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 11513-11513

    • DOI

      10.1038/s41598-018-29875-9

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Three-dimensional tracking of microbeads attached to the tip of single isolated tracheal cilia beating under external load2018

    • Author(s)
      Katoh Takanobu A.、Ikegami Koji、Uchida Nariya、Iwase Toshihito、Nakane Daisuke、Masaike Tomoko、Setou Mitsutoshi、Nishizaka Takayuki
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 15562-15562

    • DOI

      10.1038/s41598-018-33846-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Unforeseen swimming and gliding mode of an insect gut symbiont, Burkholderia sp. RPE64, with wrapping of the flagella around its cell body2017

    • Author(s)
      Kinosita Yoshiaki、Kikuchi Yoshitomo、Mikami Nagisa、Nakane Daisuke、Nishizaka Takayuki
    • Journal Title

      The ISME Journal

      Volume: 12 Issue: 3 Pages: 838-848

    • DOI

      10.1038/s41396-017-0010-z

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Asymmetric distribution of type IV pili triggered by directional light in unicellular cyanobacteria2017

    • Author(s)
      Nakane Daisuke、Nishizaka Takayuki
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 114 Issue: 25 Pages: 6593-6598

    • DOI

      10.1073/pnas.1702395114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dissection of the angle of single fluorophore attached to the nucleotide in corkscrewing microtubules2017

    • Author(s)
      Fujimura, S. Ito, Y. Ikeguchi, M. Adachi, K. Yajima, J. Nishizaka, T.
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 485 Issue: 3 Pages: 614-620

    • DOI

      10.1016/j.bbrc.2017.01.165

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Directed binding of gliding bacterium, Mycoplasma mobile, shown by detachment force and bond lifetime2016

    • Author(s)
      Tanaka A, Nakane D, Mizutani M, Nishizaka T, Miyata M
    • Journal Title

      mBio

      Volume: 7 Issue: 3 Pages: 1-1

    • DOI

      10.1128/mbio.00455-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] F1-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements2016

    • Author(s)
      Sugawa, M. Okazaki, K. I. Kobayashi, M. Matsui, T. Hummer, G. Masaike, T. Nishizaka, T.
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 0 Issue: 21 Pages: 0-0

    • DOI

      10.1073/pnas.1524720113

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Direct observation of rotation and steps of the archaellum in the swimming halophilic archaeon Halobacterium salinarum2016

    • Author(s)
      Kinosita, Y. Uchida, N. Nakane, D. Nishizaka, T.
    • Journal Title

      Nat Microbiol

      Volume: 1 Issue: 11 Pages: 16148-16148

    • DOI

      10.1038/nmicrobiol.2016.148

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Directed binding of gliding bacterium, Mycoplasma mobile, shown by detachment force and bond lifetime2016

    • Author(s)
      Tanaka, A. Nakane, D. Mizutani, M. Nishizaka, T. Miyata, M.
    • Journal Title

      mBio

      Volume: 0 Pages: 0-0

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three-Dimensional Superlocalization Imaging of Gliding Mycoplasma mobile by Extraordinary Light Transmission through Arrayed Nanoholes2015

    • Author(s)
      Lee, W. Kinosita, Y. Oh, Y. Mikami, N. Yang, H. Miyata, M. Nishizaka, T. Kim, D.
    • Journal Title

      ACS Nano

      Volume: 9 Issue: 11 Pages: 10896-908

    • DOI

      10.1021/acsnano.5b03934

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bacteriocin Protein BacL1 of Enterococcus faecalis Targets CelDivision Loci and Specifically Recognizes L-Ala2-Cross-Bridged Peptidoglycan2015

    • Author(s)
      Jun Kurushima, Daisuke Nakane, Takayuki Nishizaka, Haruyoshi Tomitaa
    • Journal Title

      Juornal of Bacteriology

      Volume: 197 Issue: 2 Pages: 286-295

    • DOI

      10.1128/jb.02203-14

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Torque Generation by Axonemal Outer-Arm Dynein2014

    • Author(s)
      Shin Yamaguchi, Kei Saito, Miki Sutoh, Takayuki Nishizaka, Yoko Y Toyoshima, Junichiro Yajima
    • Journal Title

      Biophysical Journal

      Volume: 108 Issue: 4 Pages: 872-879

    • DOI

      10.1016/j.bpj.2014.12.038

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Insights into the mechanism of archaellar motor rotation from observation of unexpectedly high torque2018

    • Author(s)
      Nishizaka, T., Iwata, S. & Nakane, D.
    • Organizer
      Asian Biophysics Association Symposium and Annual Meeting of the Australian Society for Biophysics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] APPLICATION OF SINGLE-MOLECULE TECHNIQUES TO SUPRAMOLECULAR MACHINERY IN BACTERIA AND ARCHAEA2018

    • Author(s)
      Nishizaka, T., Iwata, S. & Nakane, D.
    • Organizer
      Les Houches-TSRC Workshop on Protein Dynamics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Discoveries of Novel Motion Mechanisms of Archaea and Bacteria2018

    • Author(s)
      Nishizaka, T.
    • Organizer
      新学術領域 "ゆらぎと構造の協奏" 若手研究会「統計物理学とその周辺」
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Visualization of Behavior of Virus and Proteins in Planova Membrane Filters Using Advanced Microscope System with Confocal Optics2018

    • Author(s)
      Nishizaka, T.
    • Organizer
      THE 21st PLANOVA WORKSHOP
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] アーキアラとIV型線毛のモーターの動態を可視化する2017

    • Author(s)
      西坂崇之
    • Organizer
      日本物理学会 第72回年次大会
    • Place of Presentation
      大阪大学 豊中キャンパス
    • Year and Date
      2017-03-17
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Unitary steps of supermolecular motility machineries in gliding bacteria and swimming archaea2017

    • Author(s)
      Takayuki Nishizaka
    • Organizer
      Bacterial Flagella, Injectisomes and Type III Secretion Systems
    • Place of Presentation
      Okinawa Institute of Science and Technology Graduate University
    • Year and Date
      2017-03-01
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] "Single-molecule detection of biomolecules and protein conformational dynamics."2017

    • Author(s)
      Nishizaka, T Fujimura, S. Sohma, Y. Nakane, D
    • Organizer
      第55回 日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] "Development of optical-microscope techniques for single-molecule biophysics and their application to microbiology."2017

    • Author(s)
      Nishizaka, T.
    • Organizer
      10th International Conference on Advanced Materials and Devices
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] "Development of Imaging Techniques to Reveal Singl-Protein Dynamics and their Application to Microbiology."2017

    • Author(s)
      Nishizaka, T.
    • Organizer
      International Symposium on Fluctuation and Structure out of Equilibrium 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] “Development of Techniques for Single-Molecule Detection of Protein Conformational Dynamics and Their Application to Microbiology.”2017

    • Author(s)
      Nishizaka, T.
    • Organizer
      The 2nd Korea-Japan Joint Symposium on Single-Molecule Biophysics
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] "Direct observation of dynamics in Type IV pili system and archaella motor."2017

    • Author(s)
      Nishizaka, T.
    • Organizer
      19th IUPAB congress and 11th EBSA congress
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] "Development of imaging techniques to reveal single-protein dynamics and their application to microbiology."2017

    • Author(s)
      Nishizaka, T.
    • Organizer
      Telluride Science Research Center Workshop on Protein Dynamics
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] "Application of single-molecule techniques to supramolecular machinery in bacteria and archaea."2017

    • Author(s)
      Nishizaka, T.
    • Organizer
      The 15th International Conference of “Na,K-ATPases and Related Transport ATPases”
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural and functional dynamics of nanoscale molecular motors2016

    • Author(s)
      Takayuki Nishizaka Y. Kinosita T. A. Katoh D. Nakane
    • Organizer
      31st International Congress on High Speed Imaging and Photonics
    • Place of Presentation
      Hotel Hankyu Expo Park
    • Year and Date
      2016-11-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Visualization of dynamics of motors in archaella and type IV pili system2016

    • Author(s)
      Takayuki Nishizaka
    • Organizer
      Current and Future Perspectives in Active Matter
    • Place of Presentation
      The University of Tokyo
    • Year and Date
      2016-10-28
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 光学顕微鏡技術の新展開:膜超分子モーターへの先進的な応用 シンポジウム「膜タンパク分子作動原理解明の新基軸」2016

    • Author(s)
      西坂崇之
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      東北大学川内北キャンパス
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Unitary Steps of Supermolecular Motility Machineries in Gliding Bacteria and Swimming Arcaea2016

    • Author(s)
      Kinosita, Yoshiaki Nakane, Daisuke Uchida, Nariya Miyata, Makoto Nishizaka, Takayuki
    • Organizer
      Biophyscial Society 60th Annual Meeting
    • Place of Presentation
      Los Angeles Convention Center, Los Angeles, California
    • Year and Date
      2016-02-27
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Real-time imaging of a polymorphism, rotation rate and stepwise rotation of archaeal flagella (archaella)2016

    • Author(s)
      Kinosita, Y Uchida, N Nakane, D Nishizaka, T
    • Organizer
      Sensory transduction in Microorganism (Gordon conference)
    • Place of Presentation
      January 17-22, 2016
    • Year and Date
      2016-01-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Detection of rotation of archaeal flagella under advanced optical microscopes2015

    • Author(s)
      Kinosita, Yoshiaki Nakane, Daisuke Nishizaka, Takayuki
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanics of Motor Proteins and Supermolecular Motility Machinery Revealed under Advanced Optical Microscopes2015

    • Author(s)
      西坂崇之
    • Organizer
      WPI-next international workshop ~~High resolution cell biology~~
    • Place of Presentation
      E & S building, Nagoya Univ.
    • Year and Date
      2015-10-01
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] シンポジウム「べん毛・繊毛が織りなす多様な生命現象に挑む ~分子から個体まで~ Diverse functions of flagella and cilia; -From molecules to mammalian development-」 先進光学顕微鏡により明らかになる繊毛とアーキアべん毛の力学機能 Mechanical function of cilia and archaeal flagella resolved by advanced optical microscopes2015

    • Author(s)
      西坂崇之
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学 角間キャンパス 自然科学本館
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Book] Katoh, T. A. Fujimura, S. Nishizaka, T.2015

    • Author(s)
      Katoh, T. A. Fujimura, S. Nishizaka, T.
    • Total Pages
      15
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2020-03-30  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi