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Elucidation of energy conversion mechanism of a Na+-transporting rotary ATPase

Research Project

Project/Area Number 15H04366
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionOkazaki Research Facilities, National Institutes of Natural Sciences

Principal Investigator

IINO RYOTA  大学共同利用機関法人自然科学研究機構(岡崎共通研究施設), 岡崎統合バイオサイエンスセンター, 教授 (70403003)

Research Collaborator IIDA Tatsuya  
MURATA Takeshi  
UENO Hiroshi  
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2017: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Keywords分子モーター / 1分子計測 / 1分子計測(SMD) / 分子機械
Outline of Final Research Achievements

Enterococcus hirae V-ATPase (EhVoV1) is a rotary molecular motor which functions as a sodium ion pump across the biological membrane. The hydrophilic potion EhV1 converts chemical energy of ATP hydrolysis into unidirectional mechanical rotation. To understand chemo-mechanical coupling mechanism of Enterococcus hirae V1 (EhV1), we conducted single-molecule rotation assay using 40-nm gold nanoparticle as a low-load probe. We found that 120° steps per ATP hydrolysis were further divided into 40° and 80° substeps. Based on the results obtained in this study and insight of the previous structural analysis by X-ray crystallography, we proposed a complete chemo-mechanical coupling scheme of EhV1.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (27 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (2 results) Journal Article (5 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results) Presentation (17 results) (of which Int'l Joint Research: 6 results,  Invited: 17 results) Book (1 results) Remarks (2 results)

  • [Int'l Joint Research] コリア大学(韓国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] アカデミアシニカ(台湾)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] 金ナノプローブでタンパク質分子モーターのダイナミックな動きを観る2017

    • Author(s)
      飯野亮太, 安藤潤, 中村彰彦
    • Journal Title

      JSMI Report

      Volume: 11 Pages: 11-16

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 分子モーターの1分子イメージング2017

    • Author(s)
      飯野亮太
    • Journal Title

      生体の科学

      Volume: 68 Pages: 388-389

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Large scale femtoliter droplet array for single cell efflux assay of bacteria2017

    • Author(s)
      Iino R, Sakakihara S, Matsumoto Y, Nishino K
    • Journal Title

      Methods in Molecular Biology

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
  • [Journal Article] A single-molecule digital enzyme assay using alkaline phosphatase with a cumarin-based fluorogenic substrate2015

    • Author(s)
      Obayashi Y, Iino R, Noji H
    • Journal Title

      Analyst

      Volume: 140 Issue: 15 Pages: 5065-6073

    • DOI

      10.1039/c5an00714c

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Rotational mechanism of Enterococcus hirae V1-ATPase by crystal-structure and single-molecule analysis2015

    • Author(s)
      Iino R, Minagawa Y, Ueno H, Suzuki K, and Murata T
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 31 Pages: 49-56

    • DOI

      10.1016/j.sbi.2015.02.013

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Presentation] Single-molecule imaging and engineering of protein molecular motors2018

    • Author(s)
      Ryota Iino
    • Organizer
      Workshop on "Molecules, Materials, Devices and Systems"
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Single-molecular videography of protein molecular motors2018

    • Author(s)
      Ryota Iino
    • Organizer
      Telluride Workshop on "Molecular Videography"
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] タンパク質分子モーターの作動原理と設計原理の理解に向けて2018

    • Author(s)
      飯野亮太
    • Organizer
      第4回生体分子科学シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Molecular machines: From motion to function and energy conversion2018

    • Author(s)
      飯野亮太
    • Organizer
      AMO討論会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] プラズモニックナノプローブを用いた生体分子の時分割1分子イメージング2018

    • Author(s)
      飯野亮太
    • Organizer
      物理学会秋季大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] バイオマスを効率的に分解する生体分子モーターの作動原理2018

    • Author(s)
      飯野亮太
    • Organizer
      高分子討論会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 金ナノプローブでタンパク質1分子の動きはどこまで見えるか2017

    • Author(s)
      飯野亮太
    • Organizer
      研究会「分子観察による生命の階層横断的な理解」
    • Place of Presentation
      分子科学研究所、岡崎、愛知
    • Year and Date
      2017-03-21
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Stepping motion and chemo-mechanical coupling of chitinase resolved by single-molecule analysis2017

    • Author(s)
      Ryota Iino and Akihiko Nakamura
    • Organizer
      IUPAB 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 金ナノプローブで生体分子モーターのダイナミックな動きを観る2017

    • Author(s)
      飯野亮太
    • Organizer
      分子イメージング学会学術集会シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 機動分子科学:趣旨説明2016

    • Author(s)
      飯野亮太
    • Organizer
      日本化学会 第96春季年会 特別企画 シンポジウム「機能を動きで実現する機動分子の科学」
    • Place of Presentation
      京都府田辺市(同志社大学)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Watching dynamic motions of biological molecular machines2016

    • Author(s)
      Ryota Iino
    • Organizer
      7th RIES-Hokudai International Symposium
    • Place of Presentation
      Chateraise Gateaux Kingdom Sapporo, Sapporo, Hokkaido, Japan
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Direct observation of intermediate states during the stepping motion of kinesin-12016

    • Author(s)
      Ryota Iino
    • Organizer
      Biophysical Society Thematic Meeting: Engineering Approaches to Biomolecular Motors: From in vitro to in vivo
    • Place of Presentation
      Vancouver, Canada
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 金ナノプローブを用いた生体分子モーターの高速・高精度1分子計測2016

    • Author(s)
      飯野亮太
    • Organizer
      生理研研究会「電子顕微鏡ビッグデータが拓くバイオメディカルサイエンス」 ~限界を超えるための顕微鏡技術~
    • Place of Presentation
      岡崎コンファレンスセンター、岡崎、愛知
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Our approaches toward "real" engineering of protein molecular machines2016

    • Author(s)
      飯野亮太
    • Organizer
      分子研研究会「超機能分子の創成:合成、計測、数理が織りなす社会実装分子の戦略的設計と開発」
    • Place of Presentation
      岡崎コンファレンスセンター、岡崎、愛知
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Single-molecule analysis of energy conversion mechanism of molecular motor2015

    • Author(s)
      Ryota Iino
    • Organizer
      IMS Workshop "Grand Design of Molecular Systems; Dynamic, Correlation and Harmony"
    • Place of Presentation
      愛知県岡崎市(岡崎コンファレンスセンター)
    • Year and Date
      2015-10-08
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Dynamic motions of individual molecular motors2015

    • Author(s)
      Ryota Iino
    • Organizer
      IMS Asian Internatiional Symposium "Supramolecular Dynamics at the interface of Chemistry and Biology"
    • Place of Presentation
      愛知県岡崎市(岡崎コンファレンスセンター)
    • Year and Date
      2015-06-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 回転型ATPaseによるイオンの輸送を考える2015

    • Author(s)
      飯野亮太
    • Organizer
      分子研研究会「膜タンパク質内部のプロトン透過を考える」
    • Place of Presentation
      愛知県岡崎市(岡崎コンファレンスセンター)
    • Year and Date
      2015-04-21
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Book] 自己組織化マテリアルのフロンティア2015

    • Author(s)
      飯野亮太(分担執筆)
    • Total Pages
      8
    • Publisher
      フロンティア出版
    • Related Report
      2015 Annual Research Report
  • [Remarks] 自然科学研究機構 分子科学研究所 飯野グループ

    • URL

      https://groups.ims.ac.jp/organization/iino_g/index.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 自然科学研究機構 岡崎統合バイオサイエンスセンター 飯野グループホームページ

    • URL

      https://groups.ims.ac.jp/organization/iino_g/index.html

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2022-08-25  

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