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Adaptive genome evolution through fragile sites

Research Project

Project/Area Number 15H04403
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Genetics/Chromosome dynamics
Research InstitutionThe Graduate University for Advanced Studies

Principal Investigator

INNAN HIDEKI  総合研究大学院大学, 先導科学研究科, 教授 (90444140)

Co-Investigator(Kenkyū-buntansha) 八島 亮子  武蔵野大学, 工学部, 助教 (90759573)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2017: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2016: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2015: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Keywords適応進化 / 脆弱部位 / 突然変異ホットスポット / ゲノム進化 / 分子進化 / 集団遺伝 / 進化 / ゲノム
Outline of Final Research Achievements

We aim to demonstrate the evolutionary importance of fragile sites. Fragile sites are hot spots of mutation, which are usually selected against. In this sense, they are evolutionary useless. Here, we hypothesized that a genome has some benefit if it has fragile sites, especially when the host species face environmental changes and has to adapt in a short time. To demonstrate this, we investigated genomes of various species. For example, we found a number of genes have been integrated in the genome of parasite plants, and there seem to be hotspots of integration, where multiple genes are integrated (Kado Inann 2018 Genome Biol. Evol.). We also investigated the genome of domesticated horse, from which we found a number of regions that have changed dramatically in the domestication process.

Academic Significance and Societal Importance of the Research Achievements

脆弱部位は突然変異のホットスポットであるため、基本的には有害な物である。したがって、進化的に一時的に存在するだけで、すぐに淘汰され消滅するものであると考えられている。しかし、この概念は必ずしも正しくない。本研究では、バクテリアから高等生物まで、複数のゲノムを調べることによって、ゲノムの進化速度は一様ではなく、脆弱な速い進化を示す部分と、そうでない部分が存在するこを示した。

Report

(4 results)
  • 2018 Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (12 results)

All 2018 2017 2016 2015

All Journal Article (7 results) (of which Peer Reviewed: 6 results,  Open Access: 2 results,  Acknowledgement Compliant: 3 results) Presentation (4 results) Book (1 results)

  • [Journal Article] Coalescent framework of prokaryotes undergoing interspecific homologous recombination.2018

    • Author(s)
      Akita, T., S. Takuno, and H. Innan
    • Journal Title

      Heredity

      Volume: 120 Issue: 5 Pages: 474-484

    • DOI

      10.1038/s41437-017-0034-1

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Replication stress induces accumulation of FANCD2 at central region of large fragile genes.2018

    • Author(s)
      Okamoto Y, Iwasaki WM, Kugou K, Takahashi KK, Oda A, Sato K, Kobayashi W, Kawai H, Sakasai R, Takaori-Kondo A, Yamamoto T, Kanemaki MT, Taoka M, Isobe T, Kurumizaka H, Innan H, Ohta K, Ishiai M, Takata M.
    • Journal Title

      Nucleic Acids Res.

      Volume: 46(6) Issue: 6 Pages: 2932-2944

    • DOI

      10.1093/nar/gky058

    • NAID

      120006488604

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Horizontal gene transfer in five parasite plant species in Orobanchaceae.2018

    • Author(s)
      Kado, T., and H. Innan
    • Journal Title

      Genome Biol. Evolution

      Volume: 10 Issue: 12 Pages: 3196-3210

    • DOI

      10.1093/gbe/evy219

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] VarVer: A database of microsatellite variation in vertebrates2017

    • Author(s)
      Akiko Sato Yashima, Hideki Innan
    • Journal Title

      Mol. Ecol. Res.

      Volume: - Issue: 4 Pages: 824-833

    • DOI

      10.1111/1755-0998.12625

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] High similarity between distantly related species of a plant SINE family is consistent with a scenario of vertical transmission without horizontal transfers.2016

    • Author(s)
      Fawcett, J. A., and H. Innan
    • Journal Title

      Nol. Biol. Evol.

      Volume: 33 Issue: 10 Pages: 2593-2604

    • DOI

      10.1093/molbev/msw130

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Evaluating the performance of neutrality tests of a local community using a niche-structured simulation model.2015

    • Author(s)
      Takeuchi, Y., and H. Innan
    • Journal Title

      Oikos

      Volume: 124 Issue: 9 Pages: 1203-1214

    • DOI

      10.1111/oik.01703

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Spreading good news2015

    • Author(s)
      Fawcett, J. A., and H. Innan
    • Journal Title

      eLife

      Volume: 4

    • DOI

      10.7554/elife.05899

    • Related Report
      2015 Annual Research Report
    • Open Access
  • [Presentation] 日本のサラブレッド集団を含むウマ20品種のゲノム比較解析2018

    • Author(s)
      坂本貴洋、ジェフリー フォーセット、岩嵜 航、戸崎晃明、 佐藤文夫、印南秀樹
    • Organizer
      ウマ科学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 日本のサラブレッド集団形成に関わった遺伝子の探索とその進化2018

    • Author(s)
      ジェフリー フォーセット、坂本貴洋、岩嵜 航、戸崎晃明、 佐藤文夫、印南秀樹
    • Organizer
      ウマ科学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 生活史の諸形質は遺伝的多様性のパターンを決定する ~種横断的なメタ解析からの示唆2016

    • Author(s)
      八島亮子, 印南秀樹
    • Organizer
      個体群生態学会
    • Place of Presentation
      札幌
    • Year and Date
      2016-11-03
    • Related Report
      2016 Annual Research Report
  • [Presentation] 海水魚類種と淡水魚類種における遺伝 的多様性のパターンの比較2016

    • Author(s)
      八島亮子, 印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      三島
    • Year and Date
      2016-09-07
    • Related Report
      2016 Annual Research Report
  • [Book] ゲノム進化メカニズムと情報学的解析2015

    • Author(s)
      岩嵜航、印南秀樹
    • Total Pages
      12
    • Publisher
      化学同人
    • Related Report
      2015 Annual Research Report

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Published: 2015-04-16   Modified: 2020-03-30  

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