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Experimental demonstration and understanding of host-parasite coevolution

Research Project

Project/Area Number 15H04407
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Evolutionary biology
Research InstitutionOsaka University

Principal Investigator

Norikazu Ichihashi  大阪大学, 情報科学研究科, 准教授 (20448096)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,380,000 (Direct Cost: ¥12,600,000、Indirect Cost: ¥3,780,000)
Fiscal Year 2017: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2016: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
Fiscal Year 2015: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Keywords進化 / 軍拡競争 / RNA / 寄生体 / 共進化 / 宿主 / 実験進化 / 生命の起源 / 生命の初期進化 / RNA複製
Outline of Final Research Achievements

In this project, we aimed to understand possible evolutionary processed between hosts and parasites by constructing a simplified experimental model using self-replicating RNAs. We succeeded the construction and performed a long-term replication experiment of a host RNA with a parasitic RNA. In the replication process, we found that the host RNA evolved a resistance to the parasitic RNA by changing the encoded replicase function, and then the parasite adapt to the changed host RNA by introducing mutations. These results indicate that the host and parasitic RNAs performed an evolutionary arms-race, which can be a useful experimental model to understand coevelutionary process between hosts and parasites.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (16 results)

All 2018 2017 2016 2015

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 7 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Int'l Joint Research: 3 results,  Invited: 4 results) Book (1 results)

  • [Journal Article] Sustainability of a compartmentalized host-parasite replicator system2018

    • Author(s)
      Furubayashi, T., Ichihashi, N.
    • Journal Title

      Life

      Volume: 8 Issue: 1 Pages: 1-10

    • DOI

      10.3390/life8010003

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function2017

    • Author(s)
      Yumura, M., Yamamoto, N., Yokoyama, K., Mori, H., Yomo, T., Ichihashi, N.
    • Journal Title

      Plos ONE

      Volume: 12 Issue: 3 Pages: 1-14

    • DOI

      10.1371/journal.pone.0174130

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Host-parasite oscillation dynamics and evolution in a compartmentalized RNA replication system2016

    • Author(s)
      Bansho, Y., Furubayashi, T., Ichihashi, N.*, Yomo, T.*
    • Journal Title

      Proc Nat Aca Sci USA

      Volume: 113 Pages: 4045-4050

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A transcription and translation-coupled DNA replication system using rolling-circle replication2015

    • Author(s)
      Sakatani, Y., Ichihashi, N., Kazuta, Y., Yomo, T.
    • Journal Title

      Scientific Reports

      Volume: 5

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of a reporter peptide that catalytically produces a fluorescent signal through -complementation.2015

    • Author(s)
      Nishiyama, K., Ichihashi, N., Kazuta, Y., Yomo, T.
    • Journal Title

      Protein Science

      Volume: 24 Pages: 599-603

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activities of 20 aminoacyl-tRNA synthetases expressed in a reconstituted translation system in Escherichia coli2015

    • Author(s)
      Awai, T., Ichihashi, N., Yomo, T.
    • Journal Title

      Biochemistry and Biophysics Reports

      Volume: 3 Pages: 140-143

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Periodic Pattern of Genetic and Fitness Diversity during Evolution of an Artificial Cell-Like System2015

    • Author(s)
      Ichihashi, N., Aita, T., Motooka, D., Nakamura, S., Yomo, T.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 32 Pages: 3205-3214

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Replication of partial double-stranded RNAs by Qbeta replicase2015

    • Author(s)
      Tomita, K., Ichihashi, N., Yomo, T.
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 467 Pages: 293-296

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A design principle for a single-stranded RNA genome that replicates with less double-strand formation2015

    • Author(s)
      Usui, K., Ichihashi, N., Yomo, T.
    • Journal Title

      Nucleic Acids Research

      Volume: 43 Pages: 8033-8043

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Maintenance of a translation-coupled RNA replication in dynamic micro-sized compartments under continuous stirring and flow2015

    • Author(s)
      Yoshiyama, T., Motohashi, C., Ichihashi, N., Ichii, T., Yomo, T
    • Journal Title

      Chemical Engineering Journal

      Volume: 283 Pages: 896-902

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Presentation] 実験進化で探る物質から生命への進化可能性2018

    • Author(s)
      市橋 伯一
    • Organizer
      生命の起源と進化学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Evolution of a self-replicable RNA, the roles of compartment, parasites, and hypercycle2017

    • Author(s)
      Norikazu Ichihashi
    • Organizer
      International Conference The Origin of life
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Host-parasite oscillation dynamics and evolution in a compartmentalized RNA replication system2017

    • Author(s)
      Y. Bansho , T. Furubayashi , N. Ichihashi
    • Organizer
      XVIIIth International Conference on the Origin of Life
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthesizing an evolvable replication system from bacterial components2016

    • Author(s)
      Ichihashi N
    • Organizer
      Synthetic biology workshop
    • Place of Presentation
      奈良先端科学技術大学院大学(奈良県・生駒市)
    • Year and Date
      2016-03-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 人工RNA複製システムの構築と寄生体との共進化2015

    • Author(s)
      市橋伯一
    • Organizer
      進化学会年会
    • Place of Presentation
      中央大学(東京都・文京区)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Book] 進化する人工細胞の構築と生命の起源 人工細胞の創製とその応用 第3章2節2017

    • Author(s)
      市橋 伯一 他、植田 充美 (監修)
    • Total Pages
      214
    • Publisher
      シーエムシー出版
    • ISBN
      9784781312330
    • Related Report
      2017 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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