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Comparative study of plant populations using big-data in projection matrix models

Research Project

Project/Area Number 15H04418
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Ecology/Environment
Research InstitutionHokkaido University

Principal Investigator

TAKADA Takenori  北海道大学, 地球環境科学研究院, 特任教授 (80206755)

Co-Investigator(Kenkyū-buntansha) 横溝 裕行  国立研究開発法人国立環境研究所, 環境リスク・健康研究センター, 主任研究員 (30550074)
深谷 肇一  統計数理研究所, データ科学研究系, 外来研究員(JSPS特別研究員) (30708798)
大原 雅  北海道大学, 地球環境科学研究院, 教授 (90194274)
金子 有子  東洋大学, 文学部, 准教授 (90280817)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2017: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2015: ¥7,280,000 (Direct Cost: ¥5,600,000、Indirect Cost: ¥1,680,000)
Keywords生態学 / 植物 / ビッグデータ / 推移行列モデル / 個体群統計
Outline of Final Research Achievements

We conducted the comparative study among many biological species using a big database named COMPADRE Plant Matrix Database on plants. We obtained 4000 population projection matrices on plants. Based on the 4000 matrices, we conducted several analyses on population statistics, such as population growth rate, elasticity matrix, life table response experiment (LTRE) and flow matrix. The topics are (i) the relationship between population growth rate and elasticities, (ii) the relationship between time since introduction in alien species and the above population statistics and (iii) an analysis on randomly generated population projection matrices. Furthermore, we obtained the population projection matrix of a tree population and analyzed the population dynamics using the matrix. We also developed two mathematical methods to present for studies of COMPADRE Plant Matrix Database.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (34 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (4 results) Journal Article (12 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 12 results,  Open Access: 2 results,  Acknowledgement Compliant: 5 results) Presentation (13 results) (of which Int'l Joint Research: 7 results,  Invited: 3 results) Book (2 results) Remarks (3 results)

  • [Int'l Joint Research] Oxford University(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Oregon University(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Oregon State University(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of Antwerp(Belgium)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] A cautionary note on elasticity analyses in a ternary plot using randomly generated population matrices.2018

    • Author(s)
      T. Takada, Y. Kawai, R. Salguero-Gomez
    • Journal Title

      Population Ecology

      Volume: 60

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Reproductive biology of Clintonia udensis2018

    • Author(s)
      Yoshima A. and Ohara, M.
    • Journal Title

      Plant Species Biology

      Volume: 33 Issue: 4 Pages: 1-6

    • DOI

      10.1111/1442-1984.12170

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Skewed male reproductive success and pollen transfer in a small fragmented population of the heterodichogamous tree Machilus thunbergii2018

    • Author(s)
      Watanabe Shuntaro、Takakura Koh-Ichi、Kaneko Yuko、Noma Naohiko、Nishida Takayoshi
    • Journal Title

      Journal of Plant Research

      Volume: 131 Issue: 4 Pages: 1-9

    • DOI

      10.1007/s10265-018-1018-9

    • NAID

      40021587661

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The influence of time since introduction on the population growth of introduced species and the consequences for management2017

    • Author(s)
      Yokomizo Hiroyuki、Takada Takenori、Fukaya Keiichi、Lambrinos John G.
    • Journal Title

      Population Ecology

      Volume: 59 Issue: 2 Pages: 89-97

    • DOI

      10.1007/s10144-017-0581-6

    • NAID

      40021252170

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The analysis of an effect of seed propagation on defense strategy against pathogen transmission within clonal plant population using lattice model2017

    • Author(s)
      Sakai Yuma, Takada Takenori
    • Journal Title

      Journal of Theoretical Biology

      Volume: 427 Pages: 65-76

    • DOI

      10.1016/j.jtbi.2017.05.001

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reproductive compensation of a perennial plant Sanguisorba tenuifolia to herbivory by Phengaris teleius2017

    • Author(s)
      Uchida Yoko、Ohara Masashi
    • Journal Title

      Plant Species Biology

      Volume: 33 Issue: 1 Pages: 51-58

    • DOI

      10.1111/1442-1984.12195

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quaternary range-shift history of Japanese wingnut (Pterocarya rhoifolia) in the Japanese Archipelago evidenced from chloroplast DNA and ecological niche modeling2017

    • Author(s)
      Sugahara, K., Kaneko, Y., Sakaguchi, S., Ito, S., Yamanaka, K., Sakio, H., Hoshizaki, K., Suzuki, W., Yamanaka, N., Isagi, Y., Momohara, A., and Setoguchi, H.
    • Journal Title

      Journal of Forest Research

      Volume: 22 Pages: 282-293

    • DOI

      10.1080/13416979.2017.1351837

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The influence of time since introduction on the population growth of introduced species and the consequences for management.2017

    • Author(s)
      Yokomizo H., Takada T., Fukaya K., Lambrinos J.
    • Journal Title

      Population Ecology

      Volume: 印刷中

    • NAID

      40021252170

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Detecting the early genetic effects of habitat degradation in small size remnant populations of Machilus thunbergii Sieb. et Zucc. (Lauraceae).2017

    • Author(s)
      S. Watanabe, Y. Kaneko, Y. Maesako, N. Noma
    • Journal Title

      International Journal of Forestry Research

      Volume: 印刷中 Pages: 1-7

    • DOI

      10.1155/2017/9410626

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Pathogen Propagation Model with Superinfection in Vegetatively Propagated Plants on Lattice Space.2016

    • Author(s)
      Sakai Y, Takada T.
    • Journal Title

      PLoS ONE

      Volume: 11 Issue: 5 Pages: e0154883-e0154883

    • DOI

      10.1371/journal.pone.0154883

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 動的サイト占有モデルー状態の不確実性を考慮したサイト占有動態の統計的推測2016

    • Author(s)
      深谷肇一
    • Journal Title

      統計数理

      Volume: 64 Pages: 3-22

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Species extinction thresholds in the face of spatially correlated periodic disturbance.2016

    • Author(s)
      Liao, J., Ying, Z., Hiebeler,D., Wang, Y., Takada,T. & Nijs, I.
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 15455-15455

    • DOI

      10.1038/srep15455

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] 一回繁殖型多年生草本オオウバユリの繁殖特性―種子繁殖と栄養繁殖の寄与に関する集団間比較2018

    • Author(s)
      大嶋希美・早船琢磨・大原雅
    • Organizer
      第65回日本生態学会全国大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Elasticity analysis in semelparous species using random population matrices and COMPADRE Plant Database.2018

    • Author(s)
      T. Takada
    • Organizer
      5-th Annual meeting of Evolutionary Demography Society
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Flow matrices describing inter-stage flows of individuals: Application to comparative demographic analysis of introduced and native plant populations.2018

    • Author(s)
      H. Yokomizo, T. Takada, K. Fukaya, J. Lambrinos
    • Organizer
      5-th Annual meeting of Evolutionary Demography Society
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 個体の流れと弾性度に着目した在来種と外来種の比較2018

    • Author(s)
      横溝 裕行,高田 壮則, 深谷 肇一, John G. Lambrino
    • Organizer
      第65回日本生態学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 渓畔林樹種2種の系統地理と分布の変遷2018

    • Author(s)
      金子有子
    • Organizer
      日本生態学会第65回全国大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Theoretical Analysis of Population Projection in Random Matrix Models.2017

    • Author(s)
      T. Takada
    • Organizer
      12th International Congress of Ecology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The optimal frequencies of mast-seeding and disturbance in a riparian tree species, Pterocarya rhoifolia.2016

    • Author(s)
      Takada, T., Kaneko, Y.
    • Organizer
      第48回種生物学会
    • Place of Presentation
      キロロトリビュートポートフォリオホテル北海道(北海道赤井川市)
    • Year and Date
      2016-12-03
    • Related Report
      2016 Annual Research Report
  • [Presentation] The influence of time since introduction on the population growth of invasive species and the consequences for management.2016

    • Author(s)
      Yokomizo H.,
    • Organizer
      32-th annual meeting of Japanese Society of Population Ecology.
    • Place of Presentation
      ホテル鹿の湯(札幌市南区)
    • Year and Date
      2016-11-04
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Long and winding road from demography to evolution,2016

    • Author(s)
      Takada T.
    • Organizer
      32-th annual meeting of Japanese Society of Population Ecology.
    • Place of Presentation
      ホテル鹿の湯(札幌市南区)
    • Year and Date
      2016-11-04
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] The interactive effect of mast-seeding and disturbance on stochastic population growth rate in stage-structured model.2016

    • Author(s)
      Takada, T., Kaneko, Y.,
    • Organizer
      4-th Annual meeting of Evolutionary Demography Society.
    • Place of Presentation
      Charlottesville(USA)
    • Year and Date
      2016-10-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Testing the influence of time since introduction on population growth and optimal management.2016

    • Author(s)
      Yokomizo H., Takada T., Fukaya K., Lambrinos J.
    • Organizer
      4-th Annual meeting of Evolutionary Demography Society.
    • Place of Presentation
      Charlottesville(USA)
    • Year and Date
      2016-10-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Population statistics of random matrices2016

    • Author(s)
      Takada, T.
    • Organizer
      26-th Annual meeting of Japanese Society for Mathematical Biology
    • Place of Presentation
      九州大学椎木講堂(福岡県福岡市)
    • Year and Date
      2016-09-08
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Elasticity analysis in random matrices2015

    • Author(s)
      T. Takada
    • Organizer
      3rd Annual meeting of Evolutionary Demography Society
    • Place of Presentation
      Amsterdam, Holland
    • Year and Date
      2015-10-06
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Book] サンプリングって何だろう : 統計を使って全体を知る方法2018

    • Author(s)
      深谷 肇一、稲垣 佑典、廣瀬 雅代
    • Total Pages
      128
    • Publisher
      岩波書店
    • ISBN
      400029671X
    • Related Report
      2017 Annual Research Report
  • [Book] 琵琶湖岸からのメッセージ2017

    • Author(s)
      西野 麻知子、秋山 道雄、中島 拓男
    • Total Pages
      248
    • Publisher
      サンライズ出版
    • ISBN
      9784883256242
    • Related Report
      2017 Annual Research Report
  • [Remarks] 生物集団データベース

    • URL

      http://hosho.ees.hokudai.ac.jp/~takada/database/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 高田研究室ホームページ「生物集団データベース」

    • URL

      http://hosho.ees.hokudai.ac.jp/~takada/database/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 高田研究室「生物集団データベース」

    • URL

      http://hosho.ees.hokudai.ac.jp/~takada/database/

    • Related Report
      2015 Annual Research Report

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Published: 2015-04-16   Modified: 2022-10-07  

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