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Development of flooding-tolerant soybean using omics-integration simulation based technology

Research Project

Project/Area Number 15H04445
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Crop production science
Research InstitutionUniversity of Tsukuba (2016-2017)
National Agriculture and Food Research Organization (2015)

Principal Investigator

KOMATSU Setsuko  筑波大学, 生命環境系, 研究員 (90355751)

Co-Investigator(Kenkyū-buntansha) 坂田 克己  前橋工科大学, 工学部, 教授 (90545419)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,730,000 (Direct Cost: ¥12,100,000、Indirect Cost: ¥3,630,000)
Fiscal Year 2017: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2015: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Keywordsオミクス / シミュレイション / ダイズ / 湿害
Outline of Final Research Achievements

Soybean is sensitive to flooding stress, which markedly reduces its growth. To identify the mechanism of flooding tolerance at initial stage in early-stage soybean, omics techniques and simulation analysis were used. Flooding tolerant mutant line and abscisic acid (ABA)-treated soybean, which exhibited flooding tolerant phenotype, were used as materials. Soybean roots were collected for proteomic as well as metabolomic and transcriptomic analyses. Commonly changed metabolites, proteins, and genes between mutant and ABA-treated soybeans were considered as flooding-tolerance related candidate factors. Finally, omics results were integrated to analyze the flooding tolerant mechanism in soybean at initial stage. Integrated omics suggests that fructose might be the critical metabolite through regulation of hexokinase/phosphofructokinase and the regulation of energy metabolism might be crucial step to confer initial-flooding tolerance in early-stage soybean.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (47 results)

All 2018 2017 2016 2015

All Journal Article (24 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 24 results,  Open Access: 23 results,  Acknowledgement Compliant: 5 results) Presentation (23 results) (of which Int'l Joint Research: 15 results,  Invited: 13 results)

  • [Journal Article] Organ-Specific Proteomic Analysis of Early Vegetative Stage Soybean2018

    • Author(s)
      Khan Mudassar Nawaz、Komatsu Setsuko
    • Journal Title

      Protein Pept. Lett.

      Volume: 24 Issue: 10 Pages: 897-908

    • DOI

      10.2174/0929866524666161111110627

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Subcellular Proteomics: Application to Elucidation of Flooding-Response Mechanisms in Soybean2018

    • Author(s)
      Komatsu Setsuko、Hashiguchi Akiko
    • Journal Title

      Proteomes

      Volume: 6 Issue: 1 Pages: 13-13

    • DOI

      10.3390/proteomes6010013

    • NAID

      120007127909

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Proteomic approaches to uncover the flooding and drought stress response mechanisms in soybean2018

    • Author(s)
      Wang Xin、Komatsu Setsuko
    • Journal Title

      J. Proteomics

      Volume: 172 Pages: 201-215

    • DOI

      10.1016/j.jprot.2017.11.006

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phosphoproteomics: Protein Phosphorylation in Regulation of Seed Germination and Plant Growth2018

    • Author(s)
      Yin Xiaojian、Wang Xin、Komatsu Setsuko
    • Journal Title

      Curr. Protein Pept. Sci

      Volume: 19 Issue: 4 Pages: 401-412

    • DOI

      10.2174/1389203718666170209151048

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Metabolic profiles of flooding-tolerant mechanism in early-stage soybean responding to initial stress2017

    • Author(s)
      Wang Xin、Zhu Wei、Hashiguchi Akiko、Nishimura Minoru、Tian Jingkui、Komatsu Setsuko
    • Journal Title

      Plant Molecular Biology

      Volume: 94 Issue: 6 Pages: 669-685

    • DOI

      10.1007/s11103-017-0635-3

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteomic Analysis of Calcium Effects on Soybean Root Tip under Flooding and Drought Stresses2017

    • Author(s)
      Wang Xin、Komatsu Setsuko
    • Journal Title

      Plant Cell Physiol.

      Volume: 58 Issue: 8 Pages: 1405-1420

    • DOI

      10.1093/pcp/pcx078

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Integration of gel-based and gel-free proteomic data for functional analysis of proteins through Soybean Proteome Database2017

    • Author(s)
      Komatsu Setsuko、Wang Xin、Yin Xiaojian、Nanjo Yohei、Ohyanagi Hajime、Sakata Katsumi
    • Journal Title

      J. Proteomics

      Volume: 163 Pages: 52-66

    • DOI

      10.1016/j.jprot.2017.05.009

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Organ-specific proteomics of soybean seedlings under flooding and drought stresses2017

    • Author(s)
      Wang Xin、Khodadadi Ehsaneh、Fakheri Baratali、Komatsu Setsuko
    • Journal Title

      J. Proteomics

      Volume: 162 Pages: 62-72

    • DOI

      10.1016/j.jprot.2017.04.012

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Proteomic analysis of soybean seedling leaf under waterlogging stress in a time-dependent manner2017

    • Author(s)
      Kazemi Oskuei Bita、Yin Xiaojian、Hashiguchi Akiko、Bandehagh Ali、Komatsu Setsuko
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

      Volume: 1865 Issue: 9 Pages: 1167-1177

    • DOI

      10.1016/j.bbapap.2017.06.022

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comprehensive analysis of response and tolerant mechanisms in early-stage soybean at initial-flooding stress2017

    • Author(s)
      Yin Xiaojian、Komatsu Setsuko
    • Journal Title

      J. Proteomics

      Volume: 169 Pages: 225-232

    • DOI

      10.1016/j.jprot.2017.01.014

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcriptomic analysis reveals the flooding tolerant mechanism in flooding tolerant line and abscisic acid treated soybean2017

    • Author(s)
      Yin Xiaojian、Hiraga Susumu、Hajika Makita、Nishimura Minoru、Komatsu Setsuko
    • Journal Title

      Plant Mol. Biol.

      Volume: 93 Issue: 4-5 Pages: 479-496

    • DOI

      10.1007/s11103-016-0576-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation, Purity Assessment, and Proteomic Analysis of Nuclei2017

    • Author(s)
      Komatsu Setsuko
    • Journal Title

      Methods Mol. Biol.

      Volume: 1696 Pages: 81-90

    • DOI

      10.1007/978-1-4939-7411-5_5

    • ISBN
      9781493974092, 9781493974115
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improvement of Soybean Products Through the Response Mechanism Analysis Using Proteomic Technique2017

    • Author(s)
      Wang Xin、Komatsu Setsuko
    • Journal Title

      Adv. Food Nutr. Res.

      Volume: 82 Pages: 117-148

    • DOI

      10.1016/bs.afnr.2016.12.006

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Loss of variation of state detected in soybean metabolic and human myelomonocytic leukaemia cell transcriptional networks under external stimuli2016

    • Author(s)
      坂田 他
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 35946-35946

    • DOI

      10.1038/srep35946

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Nuclear Proteomics Reveals the Role of Protein Synthesis and Chromatin Structure in Root Tip of Soybean during the Initial Stage of Flooding Stress2016

    • Author(s)
      Yin Xiaojian、Komatsu Setsuko
    • Journal Title

      J. Proteome Res.

      Volume: 15 Issue: 7 Pages: 2283-2298

    • DOI

      10.1021/acs.jproteome.6b00330

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gel-Free/Label-Free Proteomic Analysis of Endoplasmic Reticulum Proteins in Soybean Root Tips under Flooding and Drought Stresses2016

    • Author(s)
      Wang Xin、Komatsu Setsuko
    • Journal Title

      J. Proteome Res.

      Volume: 15 Issue: 7 Pages: 2211-2227

    • DOI

      10.1021/acs.jproteome.6b00190

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quantitative Proteomics Reveals the Flooding-Tolerance Mechanism in Mutant and Abscisic Acid-Treated Soybean2016

    • Author(s)
      Yin Xiaojian、Nishimura Minoru、Hajika Makita、Komatsu Setsuko
    • Journal Title

      J. Proteome Res.

      Volume: 15 Issue: 6 Pages: 2008-2025

    • DOI

      10.1021/acs.jproteome.6b00196

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Proteins involved in biophoton emission and flooding-stress responses in soybean under light and dark conditions2016

    • Author(s)
      Kamal AH, Komatsu S.
    • Journal Title

      Mol. Biol. Rep.

      Volume: 43 Issue: 2 Pages: 73-89

    • DOI

      10.1007/s11033-015-3940-4

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Jasmonic acid induced protein response to biophoton emissions and flooding stress in soybean2016

    • Author(s)
      Kamal AH, Komatsu S
    • Journal Title

      Journal of Proteomics

      Volume: 133 Pages: 33-47

    • DOI

      10.1016/j.jprot.2015.12.004

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Impact of Post-Translational Modifications of Crop Proteins under Abiotic Stress2016

    • Author(s)
      Hashiguchi Akiko、Komatsu Setsuko
    • Journal Title

      Proteomes

      Volume: 4 Issue: 4 Pages: 42-42

    • DOI

      10.3390/proteomes4040042

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Plant nuclear proteomics for unraveling physiological function2016

    • Author(s)
      Yin Xiaojian、Komatsu Setsuko
    • Journal Title

      N Biotechnol

      Volume: 33 Issue: 5 Pages: 644-654

    • DOI

      10.1016/j.nbt.2016.03.001

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Plant subcellular proteomics: Application for exploring optimal cell function in soybean2016

    • Author(s)
      Wang Xin、Komatsu Setsuko
    • Journal Title

      J Proteomics

      Volume: 143 Pages: 45-56

    • DOI

      10.1016/j.jprot.2016.01.011

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gel-free/label-free proteomic analysis of root tip of soybean over time under flooding and drought stresses.2016

    • Author(s)
      Wang X, Oh M, Sakata K, Komatsu S.
    • Journal Title

      J Proteomics

      Volume: 130 Pages: 42-55

    • DOI

      10.1016/j.jprot.2015.09.007

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Proteomic analysis of flooded soybean root2015

    • Author(s)
      Mustafa G, Sakata K, Komatsu S.
    • Journal Title

      J Proteomics

      Volume: 128 Pages: 280-297

    • DOI

      10.1016/j.jprot.2015.08.010

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] Soybean Proteomics to Reveal the Flooding-Tolerant Mechanism2018

    • Author(s)
      Setsuko Komatsu, Katsumi Sakata
    • Organizer
      植物動物ゲノム会議XXNI, サンデイゴ(米国)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterization of Stress Responsive Mechanisms in Soybean under Abiotic Stresses using Quantitative Proteomic Approach2017

    • Author(s)
      Setsuko Komatsu
    • Organizer
      国際プロテオミクス2017年大会, クアラルンプール(マレーシア)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Proteomic technique to identify the abiotic stress tolerant mechanism in crop2016

    • Author(s)
      Setsuko KOMATSU
    • Organizer
      The Korean Human Proteome Organization, 16th Annual International Proteomics Conference
    • Place of Presentation
      Daejeon, Korea
    • Year and Date
      2016-03-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Omics technique to enhance flooding tolerance of soybean2016

    • Author(s)
      Setsuko Komatsu
    • Organizer
      The 6th National Plant Protein Research Conference, Haikou (China)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nuclear phosphoproteomics to identify the abiotic stress tolerant mechanism in crop2016

    • Author(s)
      Setsuko Komatsu
    • Organizer
      8th Anuual Meeting of Proteomics Society India & 3rd AOAPO Conference, New Delhi (India)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Gel-free/label-free phosphoproteomics reveals response mechanism in soybean under flooding stress2016

    • Author(s)
      Setsuko Komatsu
    • Organizer
      Maritime Silk Road, Hangzou (China)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Quantitative proteomics reveals initial-response mechanism in soybean under flooding stress2016

    • Author(s)
      Setsuko Komatsu
    • Organizer
      2nd INPPO World Congress, Bratislava (Slovakia)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Proteomics to identify the abiotic stress tolerant mechanism in crop2016

    • Author(s)
      Setsuko Komatsu
    • Organizer
      The 8th Asia Oceania Human Proteome Organization (AOHUPO) Congress, Sun Moon Lake (Taiwan)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Quantitative proteomic analysis of flooding and its recovery in soybean exposed to aluminum oxide nanoparticles2016

    • Author(s)
      Setsuko Komatsu
    • Organizer
      15th Human Proteome Organization World Congress, Taipei (Taiwan)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 湿害耐性に対するダイズ品種系統間の比較プロテオミクス解析2016

    • Author(s)
      小松節子、南條洋平、西村実
    • Organizer
      日本プロテオーム学会2016年大会, 北里大学 (東京)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Temporal analysis of flooded soybean root exposed to silver nanoparticles using proteomic technique.2015

    • Author(s)
      Ghazala MUSTAFA, Katsumi SAKATA, Setsuko KOMATSU
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド、神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Organ specific analysis of post-flooding recovery in soybean using proteomic and enzymatic technique.2015

    • Author(s)
      Mudassar Nawaz KHAN, Setsuko KOMATSU
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド、神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Nuclear proteomics of soybean root tip during initial stages of flooding stress.2015

    • Author(s)
      Xiaojian YIN, Setsuko KOMATSU
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド、神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Endoplasmic reticulum proteomics of soybean root tip under flooding and drought stresses.2015

    • Author(s)
      Xin WANG, Setsuko KOMATSU
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド、神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Proteomic and morphological analyses of post-flooding recovery in soybean root exposed to aluminum oxide nanoparticles.2015

    • Author(s)
      Farhat YASMEEN, Naveed Iqbal RAJA, Ghazala MUSTAFA, Setsuko KOMATSU
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド、神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Proteomic techniques and management of flooding tolerance in soybean.2015

    • Author(s)
      Setsuko KOMATSU
    • Organizer
      7th International Symposium on Frontiers in Agricultural Proteome Research
    • Place of Presentation
      Chungcheongbuk, Korea
    • Year and Date
      2015-09-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Functional analysis of post-flooding recovery in soybean using proteomic technique.2015

    • Author(s)
      Mudassar Nawaz KHAN, Setsuko KOMATSU
    • Organizer
      7th International Symposium on Frontiers in Agricultural Proteome Research
    • Place of Presentation
      Chungcheongbuk, Korea
    • Year and Date
      2015-09-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Proteomic Analysis of flooded soybean root exposed to aluminum oxide nanoparticles.2015

    • Author(s)
      Ghazala MUSTAFA, Setsuko KOMATSU
    • Organizer
      7th International Symposium on Frontiers in Agricultural Proteome Research
    • Place of Presentation
      Chungcheongbuk, Korea
    • Year and Date
      2015-09-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Characterization of stress-response mechanism in soybean roots under flooding and drought stresses using proteomic technique.2015

    • Author(s)
      MyeongWon OH, Xin WANG, Setsuko KOMATSU
    • Organizer
      7th International Symposium on Frontiers in Agricultural Proteome Research
    • Place of Presentation
      Chungcheongbuk, Korea
    • Year and Date
      2015-09-23
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Temporal organ-specific analysis of soybean under flooding and drought stresses using quantitative proteomic technique.2015

    • Author(s)
      Xin WANG, Setsuko KOMATSU
    • Organizer
      日本プロテオーム学会2015年会
    • Place of Presentation
      森都心プラザ, 熊本
    • Year and Date
      2015-07-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] Quantitative proteomics of nuclear phosphoproteins in the root tip of soybean during the initial stages of flooding stress.2015

    • Author(s)
      Xiaojian YIN, Setsuko KOMATSU
    • Organizer
      日本プロテオーム学会2015年会
    • Place of Presentation
      森都心プラザ, 熊本
    • Year and Date
      2015-07-23
    • Related Report
      2015 Annual Research Report
  • [Presentation] Proteomic technique for identifying flooding-tolerant mechanism in soybean.2015

    • Author(s)
      Setsuko KOMATSU
    • Organizer
      Plant Abiotic Stress Tolerant III
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2015-06-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterization of flooding tolerance mechanisms in soybean using proteomic techniques.2015

    • Author(s)
      Setsuko KOMATSU
    • Organizer
      Plant Biotechnology: Green For Good III
    • Place of Presentation
      Olomouc, Czech Republic
    • Year and Date
      2015-06-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited

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Published: 2015-04-16   Modified: 2019-03-29  

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