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A new twist of genome engineering technology by integrating CRISPR-Cas9 technology in yeast

Research Project

Project/Area Number 15H04475
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionSojo University

Principal Investigator

HARASHIMA Satoshi  崇城大学, 生物生命学部, 教授 (70116086)

Co-Investigator(Kenkyū-buntansha) 浴野 圭輔  崇城大学, 生物生命学部, 准教授 (30310030)
杉山 峰崇  大阪大学, 工学研究科, 准教授 (80379130)
笹野 佑  崇城大学, 生物生命学部, 准教授 (90640194)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥16,380,000 (Direct Cost: ¥12,600,000、Indirect Cost: ¥3,780,000)
Fiscal Year 2017: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2015: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Keywords酵母 / ゲノム工学 / CRISPR/Cas9 / 合成致死 / 育種学 / 応用微生物 / ゲノム / バイテクノロジー / バイオテクノロジー / 染色体工学 / ゲノムの再編成工学 / ゲノム育種
Outline of Final Research Achievements

Genome engineering could be a prospective research-promoting engine for both basic and applied biosciences. With this basic idea, we have developed a variety of genome engineering technologies. These include one-step chromosome splitting, deletion, segmental duplication and chromosome replacement. In this study, we have further developed these genome engineering technologies by integrating CRISPR-Cas9 genome editing technology. Outcome of these efforts resulted in multiple simultaneous splitting, deletion and duplication of any desired site and regions on tchromosome. These achievement accelerates manipulation of genome to reveal not only genome function but also strain breeding for biotechnology.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (39 results)

All 2017 2016 2015 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results,  Open Access: 6 results,  Acknowledgement Compliant: 3 results) Presentation (21 results) (of which Int'l Joint Research: 4 results,  Invited: 4 results) Book (3 results) Remarks (2 results)

  • [Journal Article] Molecular breeding of Saccharomyces cerevisiae with high RNA content by harnessing essential ribosomal RNA transcription regulator2017

    • Author(s)
      Yu Sasano , Takahiro Kariya , Shogo Usugi , Minetaka Sugiyama and Satoshi Harashima
    • Journal Title

      AMB Express

      Volume: 7 Issue: 1

    • DOI

      10.1186/s13568-017-0330-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Simultaneous Hydrolysis and Fermentation of Sweet Sorghum Varieties (FS501 and KCS105) into Bioethanol Using Saccharomyces steineri -A Kinetics Study2017

    • Author(s)
      Hanifrahmawan Sudibyo, Jasman Himawan Tri Bayu Murti Petrus, Agus Prasetya, Donny Widianto, Chusnul Hidayat, Irfan Dwidya Prijambada, Satoshi Harashima
    • Journal Title

      Engineering Journal

      Volume: 21 Issue: 7 Pages: 105-121

    • DOI

      10.4186/ej.2017.21.7.105

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CRISPR-PCS Protocol for Chromosome Splitting and Splitting Event Detection in Saccharomyces cerevisiae2017

    • Author(s)
      Yu Sasano and Satoshi Harashima
    • Journal Title

      Bio-protocol

      Volume: 7 Issue: 10

    • DOI

      10.21769/bioprotoc.2306

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cellular mechanisms contributing to multiple stress tolerance in Saccharomyces cerevisiae strains with potential use in high-temperature ethanol fermentation.2016

    • Author(s)
      Yasin Kitichantaropas; Chuenchit Boonchird; Minetaka Sugiyama; Yoshinobu Kaneko; Satoshi Harashima; Choowong Auesukaree, Ph.D
    • Journal Title

      AMB Express

      Volume: 6 Issue: 1 Pages: 1-14

    • DOI

      10.1186/s13568-016-0285-x

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CRISPR-PCS: a powerful new approach to inducing multiple chromosome splitting in Saccharomyces cerevisiae2016

    • Author(s)
      Yu Sasano, Koki Nagasawa, Saeed Kaboli, Minetaka Sugiyama, Satoshi Harashima
    • Journal Title

      Scientific Reports.

      Volume: 6 Issue: 1 Pages: 1-11

    • DOI

      10.1038/srep30278

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Overexpression of ESBP6 improves lactic acid resistance and production in Saccharomyces cerevisiae.2016

    • Author(s)
      Sugiyama M, Akase SP, Nakanishi R, Kaneko Y, Harashima S
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 印刷中 Issue: 4 Pages: 415-420

    • DOI

      10.1016/j.jbiosc.2016.03.010

    • NAID

      40020966107

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Core regulatory components of the PHO pathway are conserved in the methylotrophic yeast Hansenula polymorpha.2016

    • Author(s)
      Zhou Y, Yuikawa N, Nakatsuka H, Maekawa H, Harashima S, Nakanishi Y, Kaneko Y.
    • Journal Title

      Curr Genet.

      Volume: 62 Issue: 3 Pages: 595-605

    • DOI

      10.1007/s00294-016-0565-7

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improved stress resistance and ethanol production by segmental haploidization of the diploid genome in Saccharomyces cerevisiae2016

    • Author(s)
      Kaboli S, Miyamoto T, Sunada K, Sasano Y, Sugiyama M, Harashima S
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 未定 Issue: 6 Pages: 638-644

    • DOI

      10.1016/j.jbiosc.2015.10.012

    • NAID

      40020873418

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Core regulatory components of the PHO pathway are conserved in the methylotrophic yeast Hansenula polymorpha.2016

    • Author(s)
      Zhou Y, Yuikawa N, Nakatsuka H, Maekawa H, Harashima S, Nakanishi Y, Kaneko Y.
    • Journal Title

      Current Genetics

      Volume: 印刷中

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide construction of a series of designed segmental aneuploids in Saccharomyces cerevisiae2015

    • Author(s)
      Natesuntorn W, Iwami K, Matsubara Y, Sasano Y, Sugiyama M, Kaneko Y, Harashima S
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 12510-12526

    • DOI

      10.1038/srep12510

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nuclear localization domains of GATA activator Gln3 are required for transcription of target genes through dephosphorylation in Saccharomyces cerevisiae.2015

    • Author(s)
      Numamoto M, Tagami S, Ueda Y, Imabeppu Y, Sasano Y, Sugiyama M, Maekawa H, Harashima S.
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 120 Issue: 2 Pages: 121-127

    • DOI

      10.1016/j.jbiosc.2014.12.017

    • NAID

      110009978121

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Type 2C protein phosphatase Ptc6 participates in activation of the Slt2-mediated cell wall integrity pathway in Saccharomyces cerevisiae.2015

    • Author(s)
      Sharmin D, Sasano Y, Sugiyama M, Harashima S.
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 119 Issue: 4 Pages: 392-398

    • DOI

      10.1016/j.jbiosc.2014.09.013

    • NAID

      110009942817

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Stabilization of mini-chromosome segregation during mitotic growth by overexpression of YCR041W and its application to chromosome engineering in Saccharomyces cerevisiae.2015

    • Author(s)
      Sasano Y, Yamagishi K, Tanikawa M, Nakazawa T, Sugiyama M, Kaneko Y, Harashima S.
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 119 Issue: 5 Pages: 526-531

    • DOI

      10.1016/j.jbiosc.2014.10.006

    • NAID

      110009962605

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 出芽酵母における“超”高次倍数体育種技術の開発2017

    • Author(s)
      糸数帆高,松本拓己,浴野圭輔,西澤正文,原島 俊
    • Organizer
      第24回 日本生物工学会九州支部 沖縄大会(2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] バガス由来阻害物耐性出芽酵母変異株の分離と遺伝解析2017

    • Author(s)
      谷 龍典,門畑凌太,村上亮輔,藤本昌希,平川万里,浴野圭輔,原島 俊
    • Organizer
      第24回 日本生物工学会九州支部 沖縄大会(2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] Bacillus subtilis NBRC13719由来抗菌ペプチドの解析2017

    • Author(s)
      前山 諒,岡 拓二,原島 俊,浴野圭輔
    • Organizer
      第24回 日本生物工学会九州支部 沖縄大会(2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] CRISPR-PCS法を基盤とした酵母染色体の多様な操作技術の開発2016

    • Author(s)
      笹野 佑, 長澤 宏器, 木村 駿太, Kaboli Saeed, 中井 大志, 村山 亮太, 杉山 峰崇, 原島 俊
    • Organizer
      第68回日本生物工学会大会
    • Place of Presentation
      富山国際会議場ANAクラウンプラザ富山(富山県富山市)
    • Year and Date
      2016-09-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] 高温耐性酵母Ogataea polymorphaによる乳酸生産2016

    • Author(s)
      杉山 峰崇, 加藤 謙斗, 深谷 健, 橋本 晋弥, 笹野 佑, 金子 嘉信, 原島 俊
    • Organizer
      第68回日本生物工学会大会
    • Place of Presentation
      富山国際会議場ANAクラウンプラザ富山(富山県富山市)
    • Year and Date
      2016-09-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] - A new challenge to deciphering genome function and breeding -2016

    • Author(s)
      Satoshi Harashima, Minetaka Sugiyama, Yu Sasano
    • Organizer
      The 14th International Congress on Yeasts
    • Place of Presentation
      兵庫県立淡路夢舞台国際会議場(兵庫県淡路市)
    • Year and Date
      2016-09-11
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] CRISPR-PCS: a versatile chromosome manipulation technology in Saccharomyces cerevisiae2016

    • Author(s)
      Yu Sasano, Koki Nagasawa, Shunta Kimura, Saeed Kaboli, Taishi Nakai, Ryota Murayama, Minetaka Sugiyama, Satoshi Harashima
    • Organizer
      The 14th International Congress on Yeasts
    • Place of Presentation
      兵庫県立淡路夢舞台国際会議場(兵庫県淡路市)
    • Year and Date
      2016-09-11
    • Related Report
      2016 Annual Research Report
  • [Presentation] Genetic engineering of the thermotolerant yeast Ogataea polymorpha for lactic acid production2016

    • Author(s)
      Kento Kato, Takeru Fukaya, Shinya Hashimoto, Yu Sasano, Yoshinobu Kaneko, Satoshi Harashima, Minetaka Sugiyama
    • Organizer
      The 14th International Congress on Yeasts
    • Place of Presentation
      兵庫県立淡路夢舞台国際会議場(兵庫県淡路市)
    • Year and Date
      2016-09-11
    • Related Report
      2016 Annual Research Report
  • [Presentation] 出芽酵母において多様な染色体操作を可能にするCRISPR-PCS法の開発2016

    • Author(s)
      笹野 佑, 長澤宏器, 木村駿太, Kaboli Saeed, 中井大志, 村山亮太, 杉山峰崇, 原島 俊
    • Organizer
      酵母遺伝学フォーラム第49回研究報告会
    • Place of Presentation
      シーサイドホテル舞子ビラ(兵庫県神戸市)
    • Year and Date
      2016-09-09
    • Related Report
      2016 Annual Research Report
  • [Presentation] Ogataea polymorphaによる高効率乳酸発酵2016

    • Author(s)
      杉山峰崇、加藤謙斗、深谷 健、橋本晋弥、笹野 佑、金子嘉信、原島 俊
    • Organizer
      酵母遺伝学フォーラム第49回研究報告会
    • Place of Presentation
      シーサイドホテル舞子ビラ(兵庫県神戸市)
    • Year and Date
      2016-09-09
    • Related Report
      2016 Annual Research Report
  • [Presentation] 出芽酵母プロテインホスファターゼのゲノムサイエンス2016

    • Author(s)
      原島 俊
    • Organizer
      日本プロテインホスファターゼ研究会 2015 学術集会
    • Place of Presentation
      基礎生物学研究所(愛知県岡崎市)
    • Year and Date
      2016-01-29
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Genome engineering : perspective and challenges for synthetic biotechnology in yeast2015

    • Author(s)
      Harashima S
    • Organizer
      The 27th Annual Meeting of the Thai Society for Biotechnology and International Conference
    • Place of Presentation
      マンダリンホテル(バンコク、タイ)
    • Year and Date
      2015-11-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Improvement of thermotolerance of Saccharomyces cerevisiae for bioethanol production by genome shuffling2015

    • Author(s)
      Minetaka Sugiyama, Junyuan Wu, Yu Sasano, Yoshinobu Kaneko, Chuenchit Boonchird, Satoshi Harashima、
    • Organizer
      The 27th Annual Meeting of the Thai Society for Biotechnology and International Conference
    • Place of Presentation
      マンダリンホテル(バンコク、タイ)
    • Year and Date
      2015-11-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ゲノムシャフリングによるキシロース発酵性酵母Spathaspora passalidarum の高温耐性化2015

    • Author(s)
      笹野 佑、林 真帆、藤原悠人、杉山峰崇、原島 俊
    • Organizer
      第67回日本生物工学会大会
    • Place of Presentation
      城山観光ホテル(鹿児島県鹿児島市)
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] Bacillus thuringiensis A297株が生産する2種類の抗菌タンパク質2015

    • Author(s)
      浴野圭輔、高橋亮太、斉藤浩之、三田光章、岡 拓二、原島 俊、水城英一
    • Organizer
      第67回日本生物工学会大会
    • Place of Presentation
      城山観光ホテル(鹿児島県鹿児島市)
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] バイオエタノール生産のためのゲノムシャフリングによる高温耐性酵母の開発2015

    • Author(s)
      杉山峰崇、呉 俊元、笹野 佑、金子嘉信、原島 俊
    • Organizer
      第67回日本生物工学会大会
    • Place of Presentation
      城山観光ホテル(鹿児島県鹿児島市)
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] Improved thermotolerance od Saccharomyces cerevisiae for bioethanol production by genome shuffling2015

    • Author(s)
      Minetaka Sugiyama、 Junyuan Wum Yu Sasano、Satoshi Harashima
    • Organizer
      The 32nd International Specialized Symposium on Yeast
    • Place of Presentation
      Perugia Congress Center(Perugia、イタリア)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CRISPR-PCS: An efficient and versatile chromosome splitting technology in yeast2015

    • Author(s)
      Yu Sasano, Koki Nagasawa, Saeed Kaboli, Minetaka Sugiyama, Satoshi Harashima
    • Organizer
      The 27th International Conference on Yeast Genetics and Molecular Biology
    • Place of Presentation
      Conference Hall(Levico Terme、イタリア)
    • Year and Date
      2015-09-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CRISPR-PCS:多様な染色体操作が可能な染色体工学技術2015

    • Author(s)
      Yu Sasano、Koki Nagasawa、Saeed Kaboli、Minetaka Sugiyama、Satoshi Hiroshima
    • Organizer
      酵母遺伝学フォーラム第48回研究報告会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
  • [Presentation] バイオエタノール生産のためのゲノムシャフリングによる高温耐性酵母の開発2015

    • Author(s)
      杉山峰崇、呉 俊元、笹野 佑、金子嘉信、原島 俊
    • Organizer
      酵母遺伝学フォーラム第48回研究報告会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高温耐性酵母 Hansenula polymorpha による乳酸生産2015

    • Author(s)
      加藤謙斗、笹野 佑、金子嘉信、原島 俊、杉山峰崇
    • Organizer
      酵母遺伝学フォーラム第48回研究報告会
    • Place of Presentation
      広島大学(広島県東広島市)
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
  • [Book] リン酸シグナル伝達 リンの事典(大竹久夫著書)2017

    • Author(s)
      原島 俊
    • Total Pages
      9
    • Publisher
      朝倉書店
    • Related Report
      2017 Annual Research Report
  • [Book] 化学と生物「高温・有機酸ストレス耐性出芽酵母の育種と発酵生産への利用」2016

    • Author(s)
      杉山 峰崇, 笹野 佑, 鈴木 俊宏, 原島 俊
    • Publisher
      国際文献社
    • Related Report
      2016 Annual Research Report
  • [Book] Mechanism of Yeast Adaptation to Weak Organic Acid Stress : In Stress Biology of Yeasts and Fungi (ed by H. Takagi and H. Kitagaki)2015

    • Author(s)
      M. Sugiyama、 Y. Sasano、 S. Harashima
    • Total Pages
      218
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Remarks] 応用微生物工学科応用微生物学研究室(原島研究室)

    • URL

      http://micro.bio.sojo-u.ac.jp/research_contents/harashima/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 革新的ゲノム工学技術の開発、- 出芽酵母ゲノム工学技術の開発と産業酵母育種への応用 -

    • URL

      http://www.sojo-kyoso.com/industry/pdf/seeds58.pdf

    • Related Report
      2017 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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