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Analysis of LINE-1 retrotransposition using poly(I:C) animal model

Research Project

Project/Area Number 15H04891
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Psychiatric science
Research InstitutionKumamoto University

Principal Investigator

Iwamoto Kazuya  熊本大学, 大学院生命科学研究部(医), 教授 (40342753)

Co-Investigator(Renkei-kenkyūsha) BUNDO Miki  熊本大学, 大学院生命科学研究部, 准教授 (00597221)
KATO Tadafumi  理化学研究所, 脳科学総合研究センター, チームリーダー (30214381)
KASAI Kiyoto  東京大学, 大学院医学系研究科, 教授 (80322056)
Research Collaborator MURATA Yui  熊本大学, 大学院生命科学研究部, 博士研究員 (10802077)
SAWAMURA Rie  熊本大学, 大学院生命科学研究部, 助教 (80509654)
KIYOTA Emi  熊本大学, 大学院生命科学研究部, 技術補佐員
UCHINUNO Emi  熊本大学, 大学院生命科学研究部, 技術補佐員
UEDA Junko  理化学研究所, 脳科学総合研究センター, 技術補佐員
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2017: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2016: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2015: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Keywords体細胞変異 / 統合失調症 / トランスポゾン / 精神疾患 / 脳神経疾患 / ゲノム
Outline of Final Research Achievements

Using poly (I:C) mouse model, we analyzed fetal neural progenitor cells. RNA-seq analysis revealed increased expression of immune response and inflammation-related genes and decreased expression of genes related to neurodevelopment. Protein analysis by iTRAQ showed increased expression of factors suppressing viral activity. In addition, analysis of the cytosine modification status for each of the three active LINE-1 subfamilies in mice identified subfamily dependent epigenetic changes. One subfamily showed decreased cytosine methylation and increased hydroxymethylation, suggesting the possibility of selective activation of retrotransposition activity.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (25 results)

All 2018 2017 2016 2015

All Journal Article (11 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 9 results,  Open Access: 10 results,  Acknowledgement Compliant: 1 results) Presentation (14 results) (of which Int'l Joint Research: 4 results,  Invited: 8 results)

  • [Journal Article] Identification of somatic mutations in monozygotic twins discordant for psychiatric disorders.2018

    • Author(s)
      Nishioka M, Bundo M, Ueda J, Yoshikawa A, Nishimura F, Sasaki T, Kakiuchi C, Kasai K, Kato T, Iwamoto K.
    • Journal Title

      NPJ Schizophr.

      Volume: 4 Issue: 1 Pages: 7-7

    • DOI

      10.1038/s41537-018-0049-5

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA methylation analyses of the candidate genes identified by a methylome-wide association study revealed common epigenetic alterations in schizophrenia and bipolar disorder.2018

    • Author(s)
      Sugawara H, Murata Y, Ikegame T, Sawamura R, Shimanaga S, Takeoka Y, Saito T, Ikeda M, Yoshikawa A, Nishimura F, Kawamura Y, Kakiuchi C, Sasaki T, Iwata N, Hashimoto M, Kasai K, Kato T, Bundo M, Iwamoto K.
    • Journal Title

      Psychiatry Clin Neurosci

      Volume: in press Issue: 4 Pages: 245-254

    • DOI

      10.1111/pcn.12645

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of somatic mutations in postmortem human brains by whole genome sequencing and their implications for psychiatric disorders.2018

    • Author(s)
      Nishioka M, Bundo M, Ueda J, Katsuoka F, Sato Y, Kuroki Y, Ishii T, Ukai W, Murayama S, Hashimoto E, Nagasaki M, Yasuda J, Kasai K, Kato T, Iwamoto K.
    • Journal Title

      Psychiatry Clin Neurosci.

      Volume: 72 Issue: 4 Pages: 280-294

    • DOI

      10.1111/pcn.12632

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An epigenome-wide methylation study of healthy individuals with or without depressive symptoms.2018

    • Author(s)
      Shimada M, Otowa T, Miyagawa T, Umekage T, Kawamura Y, Bundo M, Iwamoto K, Ikegame T, Tochigi M, Kasai K, Kaiya H, Tanii H, Okazaki Y, Tokunaga K, Sasaki T. An epigenome-wide methylation study of healthy individuals with or without depressive symptoms.
    • Journal Title

      J Hum Genet

      Volume: 63 Issue: 3 Pages: 319-326

    • DOI

      10.1038/s10038-017-0382-y

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA methylation profiling in a neuroblastoma cell line exposed to the antipsychotic perospirone2018

    • Author(s)
      Murata Y, Bundo M, Sunaga F, Kasai K, Iwamoto K.
    • Journal Title

      Pharmacopsychiatry

      Volume: in press Issue: 02 Pages: 63-69

    • DOI

      10.1055/s-0044-101467

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mutations of the glycine cleavage system genes possibly affect the negative symptoms of schizophrenia through metabolomic profile changes2018

    • Author(s)
      Yoshikawa Akane, Nishimura Fumichika, Inai Aya, Eriguchi Yosuke, Nishioka Masaki, Takaya Atsuhiko, Tochigi Mamoru, Kawamura Yoshiya, Umekage Tadashi, Kato Kayoko, Sasaki Tsukasa, Ohashi Yoshiaki, Iwamoto Kazuya, Kasai Kiyoto, Kakiuchi Chihiro
    • Journal Title

      Psychiatry and Clinical Neurosciences

      Volume: 72 Issue: 3 Pages: 168-179

    • DOI

      10.1111/pcn.12628

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Understanding the epigenetic architecture of psychiatric disorders: modifications and beyond2018

    • Author(s)
      Iwamoto K
    • Journal Title

      Psychiatry and Clinical Neurosciences

      Volume: 72 Issue: 4 Pages: 194-194

    • DOI

      10.1111/pcn.12646

    • Related Report
      2017 Annual Research Report
    • Open Access
  • [Journal Article] DNA methylation and hydroxymethylation analyses of the active LINE-1 subfamilies in mice2017

    • Author(s)
      Murata Y, Bundo M, Ueda J, Kubota-Sakashita M, Kasai K, Kato T, Iwamoto K
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 13624-13624

    • DOI

      10.1038/s41598-017-14165-7

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Polyunsaturated fatty acid deficiency during neurodevelopment in mice models the prodromal state of schizophrenia through epigenetic changes in nuclear receptor genes2017

    • Author(s)
      Maekawa M、Watanabe A、Iwayama Y、Kimura T、Hamazaki K、Balan S、Ohba H、Hisano Y、Nozaki Y、Ohnishi T、Toyoshima M、Shimamoto C、Iwamoto K、Bundo M、Osumi N、Takahashi E、Takashima A、Yoshikawa T
    • Journal Title

      Transl Psychiatry.

      Volume: 7 Issue: 9 Pages: e1229-e1229

    • DOI

      10.1038/tp.2017.182

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenome-wide association study of DNA methylation in panic disorder2017

    • Author(s)
      Shimada-Sugimoto, M., T. Otowa, T. Miyagawa, T. Umekage, Y. Kawamura, M. Bundo, K. Iwamoto, M. Tochigi, K. Kasai, H. Kaiya, H. Tanii, Y. Okazaki, K. Tokunaga and T. Sasaki
    • Journal Title

      Clinical Epigenetics

      Volume: 9 Issue: 1 Pages: 6-6

    • DOI

      10.1186/s13148-016-0307-1

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Enrichment of deleterious variants of mitochondrial DNA polymerase gene (POLG1) in bipolar disorder2016

    • Author(s)
      Kasahara T, Ishiwata M, Kakiuchi C, Fuke S, Iwata N, Ozaki N, Kunugi H, Minabe Y, Nakamura K, Iwata Y, Fujii K, Kanba S, Ujike H, Kusumi I, Kataoka M, Matoba N, Takata A, Iwamoto K, Yoshikawa T, Kato T
    • Journal Title

      Psychiatry and Clinical Neurosciences

      Volume: 71 Issue: 8 Pages: 518

    • DOI

      10.1111/pcn.12496

    • URL

      https://pure.teikyo.jp/en/publications/df0b0550-9cf0-4b43-a68b-b127da4f7683

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] ヒト前頭様神経細胞における体細胞ゲノム変異の検出2018

    • Author(s)
      文東美紀、加藤忠史、岩本和也
    • Organizer
      第123回日本解剖学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Increased hmC levels of active LINE-1 promoter in neural precursor cells of poly(I:C) mouse model2018

    • Author(s)
      Murata Y, Bundo M, Kato T, Iwamoto K
    • Organizer
      Keystone symposium
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Comprehensive DNA methylation analysis of peripheral blood cells derived from patients with first-episode schizophrenia.2017

    • Author(s)
      Nishioka M, Bundo M, Kasai K, Iwamoto K
    • Organizer
      第62回日本人類遺伝学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] ヒト脳組織および一卵性双生児における体細胞変異の検出と精神障害2017

    • Author(s)
      西岡将基、文東美紀、笠井清登、加藤忠史、岩本和也
    • Organizer
      第39回日本生物学的精神医学会・第47回日本神経精神薬理学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Exploration of the pathophysiological role of epigenetic and genomic variations in brains of patients with major psychiatric disorders2017

    • Author(s)
      Iwamoto K
    • Organizer
      The 72nd Fujihara Seminar International Symposium
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 脳ゲノムの動的特性と精神疾患の発症メカニズムの探索2017

    • Author(s)
      岩本和也
    • Organizer
      第113回日本精神神経学会学術総会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] LINE-1 copy number analysis of schizophrenic patients2017

    • Author(s)
      Bundo M, Kato T, Iwamoto K
    • Organizer
      The 2nd Tore Nilson/Karolinska Institutet conference in Nobel Forum on clinical epigenetics
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 神経発達期におけるpoly(I:C)母体曝露によるゲノム・エピゲノム状態への影響2016

    • Author(s)
      村田唯、文東美紀、大西新、窪田-坂下美恵、池亀天平、石渡みずほ、須原哲也、笠井清登、加藤忠史、岩本和也
    • Organizer
      第38回日本生物学的精神医学会 ・ 第59回日本神経化学会大会
    • Related Report
      2016 Annual Research Report
  • [Presentation] 統合失調症神経発達障害モデル動物におけるDNAメチル化解析2015

    • Author(s)
      村田唯、文東美紀、窪田美恵、池亀天平、上田順子、宮内妙子、井上良夢、石渡みずほ、笠井清登、加藤忠史、岩本和也
    • Organizer
      第45回日本神経精神薬理学会・第37回日本生物学的精神医学会
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 脳神経系細胞におけるゲノム・エピゲノム状態の変動と精神疾患2015

    • Author(s)
      岩本和也
    • Organizer
      第45回日本神経精神薬理学会・第37回日本生物学的精神医学会
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2015-09-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Analysis of DNA methylation of LINE-1 in poly(I:C) mice2015

    • Author(s)
      Murata Y, Bundo M, Kubota M, Ikegame T, Miyauchi T, Inoue R, Ishiwata M, Kasai K, Kato T, Iwamoto K
    • Organizer
      第38回日本神経科学会
    • Place of Presentation
      神戸コンベンションセンター
    • Year and Date
      2015-07-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] Brain genome and epigenome analyses in psychiatric disorders2015

    • Author(s)
      Bundo M, Kato T, Iwamoto K
    • Organizer
      第38回日本神経科学会
    • Place of Presentation
      神戸コンベンションセンター
    • Year and Date
      2015-07-28
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] DNA methylation analysis of active LINE-1 subfamiles in an animal model of schizophrenia2015

    • Author(s)
      Murata Y, Bundo M, Kubota M, Ikegame T, Miyauchi T, Inoue R, Ishiwata M, Kasai K, Kato T, Iwamoto K
    • Organizer
      FASEB Science Research Conference: Mobile DNA in Mammalian Genomes
    • Place of Presentation
      West Palm Beach, フロリダ, アメリカ
    • Year and Date
      2015-06-14
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] マウスLINE-1のDNAメチル化およびハイドロキシメチル化率測定系の構築2015

    • Author(s)
      村田唯、文東美紀、窪田美恵、笠井清登、加藤忠史、岩本和也
    • Organizer
      第9回エピジェネティクス研究会
    • Place of Presentation
      東京一ツ橋学術総合センター
    • Year and Date
      2015-05-25
    • Related Report
      2015 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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