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Precise genomic correction by intercellular regulation of genome editing enzyme

Research Project

Project/Area Number 15H05581
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Medical genome science
Research InstitutionKyoto University

Principal Investigator

Hotta Akitsu  京都大学, iPS細胞研究所, 特定拠点講師 (50578002)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,730,000 (Direct Cost: ¥12,100,000、Indirect Cost: ¥3,630,000)
Fiscal Year 2017: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2015: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Keywordsゲノム編集 / iPS細胞 / CRISPR / 相同組換え / 一塩基修復 / 一塩基変異 / 一塩基置換 / CRISPR-Cas9 / 遺伝子治療
Outline of Final Research Achievements

About half of the genetic mutation causing human disease is a single nucleotide mutation. Deletion via NHEJ (nonhomologous end joining) can be relatively easily induced by using recent genomic editing techniques including CRISPR-Cas9, but knock-in using HDR (homologous recombination) efficiency was less than 1%, which was extremely inefficient. Therefore, we developed the CRONUS system in which CRISPR-Cas9 and guide-RNA were incorporated in the cells with a piggyBac transposon vector in advance, and Cas9 activity can be induced with two kinds of drugs. This made it possible to induce a desired single base modification at efficiencies as high as 20% to 30%, far exceeding the efficiency (<1%) so far.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Products Report
  • Research Products

    (39 results)

All 2023 2021 2020 2018 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (11 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 9 results,  Open Access: 8 results,  Acknowledgement Compliant: 4 results) Presentation (13 results) (of which Int'l Joint Research: 3 results,  Invited: 11 results) Book (6 results) Patent(Industrial Property Rights) (8 results)

  • [Int'l Joint Research] Skoltech(ロシア連邦)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Site-specific randomization of the endogenous genome by a regulatable CRISPR-Cas9 piggyBac system in human cells2018

    • Author(s)
      Kentaro Ishida, Huaigeng Xu, Noriko Sasakawa, Mandy Siu Yu Lung, Julia Alexandra Kudryashev, Peter Gee & Akitsu Hotta
    • Journal Title

      Scientific Reports

      Volume: online Issue: 1 Pages: 310-310

    • DOI

      10.1038/s41598-017-18568-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pluripotent stem cell models of Blau syndrome reveal an IFN-γ?dependent inflammatory response in macrophages2018

    • Author(s)
      Takada Sanami、Kambe Naotomo、Kawasaki Yuri、Niwa Akira、Honda-Ozaki Fumiko、Kobayashi Kazuki、Osawa Mitsujiro、Nagahashi Ayako、Semi Katsunori、Hotta Akitsu、Asaka Isao、Yamada Yasuhiro、Nishikomori Ryuta、Heike Toshio、Matsue Hiroyuki、Nakahata Tatsutoshi、Saito Megumu K.
    • Journal Title

      J ALLERGY CLIN IMMUNOL

      Volume: 141 Issue: 1 Pages: 339-349.e11

    • DOI

      10.1016/j.jaci.2017.04.013

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Human AK2 links intracellular bioenergetic redistribution to the fate of hematopoietic progenitors2018

    • Author(s)
      Oshima Koichi、Watanabe Akira、Nakahata Tatsutoshi、Saito Megumu K. et al.
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 497 Issue: 2 Pages: 719-725

    • DOI

      10.1016/j.bbrc.2018.02.139

    • NAID

      120006466601

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Srf destabilizes cellular identity by suppressing cell-type-specific gene expression programs2018

    • Author(s)
      Ikeda T, Hikichi T, Miura H, Shibata H, Mitsunaga K, Yamada Y, Woltjen K, Miyamoto K, Watanabe A, Hiratani I, Yamada Y, Yamamoto T, Hotta A, Okita K, Masui S
    • Journal Title

      Nat Commun.

      Volume: 9 Issue: 1 Pages: 1387-1387

    • DOI

      10.1038/s41467-018-03748-1

    • NAID

      120006517799

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cell-type-specific genome editing with a microRNA-responsive CRISPR?Cas9 switch2017

    • Author(s)
      Hirosawa Moe、Fujita Yoshihiko、Parr Callum、Hayashi Karin、Kashida Shunnichi、Hotta Akitsu、Woltjen Knut、Saito Hirohide
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: 13 Pages: e118-e118

    • DOI

      10.1093/nar/gkx309

    • NAID

      120006306001

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 筋ジストロフィー治療応用を目指したゲノム編集技術の開発動向2017

    • Author(s)
      蒔田幸正, 穂積裕幸, 堀田秋津
    • Journal Title

      Clinical Calcium

      Volume: 27 Pages: 391-399

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Duchenne型筋ジストロフィーに対するゲノム編集戦略2016

    • Author(s)
      徐 淮耕, 堀田秋津
    • Journal Title

      医学のあゆみ

      Volume: 259 Pages: 73-79

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Genome editing gene therapy for Duchenne muscular dystrophy.2015

    • Author(s)
      Hotta A.
    • Journal Title

      J. Neuromuscul. Dis.,

      Volume: 2 Issue: 4 Pages: 343-355

    • DOI

      10.3233/jnd-150116

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] From genomics to gene therapy: induced pluripotent stem cells meet genome editing.2015

    • Author(s)
      Hotta A, and Yamanaka S.
    • Journal Title

      Annu. Rev. Genet.,

      Volume: 49 Issue: 1 Pages: 47-70

    • DOI

      10.1146/annurev-genet-112414-054926

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Minimizing off-target mutagenesis risks caused by programmable nucleases.2015

    • Author(s)
      Ishida K*, Gee P*, and Hotta A. (*: equal contribution)
    • Journal Title

      Int. J. Mol. Sci.,

      Volume: 16 Issue: 10 Pages: 24751-24771

    • DOI

      10.3390/ijms161024751

    • NAID

      120005689182

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Efficient genomic correction methods in human iPS cells using CRISPR-Cas9 system.2015

    • Author(s)
      Li HL, Gee P, Ishida K, and Hotta A.
    • Journal Title

      Methods,

      Volume: S1046 Pages: 27-35

    • DOI

      10.1016/j.ymeth.2015.10.015

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Genome Editing Applications for iPS Cells and Duchenne Muscular Dystrophy2017

    • Author(s)
      堀田秋津
    • Organizer
      International Conference of the Genetics Society of Korea (ICGSK) 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] iPS細胞での効率的なゲノム編集と筋ジストロフィー治療への応用2017

    • Author(s)
      堀田秋津
    • Organizer
      ConBio2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] iPS細胞での効率的なゲノム編集を目指したCRISPRツールボックス2016

    • Author(s)
      堀田秋津
    • Organizer
      第39回日本分子生物学 会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Gene therapy strategy for Duchenne muscular dystrophy using iPS cells and CRISPR genome editing2016

    • Author(s)
      堀田秋津
    • Organizer
      Center for Data-Intensive Biomedicine and Biotecnology Seminar
    • Place of Presentation
      Skoltech, Russia
    • Year and Date
      2016-10-12
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] iPS細胞での効率的なゲノム編集を目指したCRISPRツールボックス2016

    • Author(s)
      堀田秋津
    • Organizer
      第68回日本生物工学会大会
    • Place of Presentation
      富山国際会議場
    • Year and Date
      2016-09-28
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] CRISPRツールボックスによるヒトゲノム編集効率化2016

    • Author(s)
      堀田秋津
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] CRISPR システムにおける in silico オフターゲット配列予想ツール比較2016

    • Author(s)
      田中 正視, 井福 正隆, 藤本 直子, 堀田 秋津
    • Organizer
      第1回日本ゲノム編集学会
    • Place of Presentation
      広島国際会議場
    • Year and Date
      2016-09-06
    • Related Report
      2016 Annual Research Report
  • [Presentation] Genome editing iPS cells by CRISPR-Cas9 for Duchenne muscular dystrophy gene therapy2016

    • Author(s)
      堀田秋津
    • Organizer
      The 39th Annual Meeting of the Japan Neuroscience Society
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2016-07-21
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] デュシェンヌ型筋ジストロフィーiPS細胞を用いたゲノム編集遺伝子治療2015

    • Author(s)
      堀田秋津
    • Organizer
      第33回日本神経治療学会総会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2015-11-26
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 疾患iPS細胞における新規遺伝子修復戦略2015

    • Author(s)
      堀田秋津
    • Organizer
      第39回 阿蘇シンポジウム
    • Place of Presentation
      阿蘇リゾート グランヴィリオホテル
    • Year and Date
      2015-08-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Efficient gene correction of Duchunne muscular dystrophy mutation in iPS cells by TALENs and CRISPR-Cas92015

    • Author(s)
      堀田秋津
    • Organizer
      第21回日本遺伝子治療学会総会
    • Place of Presentation
      Osaka International Convention Center
    • Year and Date
      2015-07-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 疾患iPS細胞における病原変異遺伝子のゲノム手術2015

    • Author(s)
      堀田秋津
    • Organizer
      第62回 日本実験動物学会 総会
    • Place of Presentation
      京都テルサ
    • Year and Date
      2015-05-28
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Precise control of CRISPR-Cas9 mediated gene editing for correcting mutation of Duchenne muscular dystrophy in iPS Cells2015

    • Author(s)
      Hongmei L Li, Norko Sasakawa, Kentaro Ishida, Peter Gee and Akitsu Hotta,
    • Organizer
      American Society of Gene & Cell Therapy (ASGCT) 18th Annual Meeting
    • Place of Presentation
      米国ニューオリンズ
    • Year and Date
      2015-05-13
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Book] 生物の科学 遺伝 Vol.71 (05)「iPS細胞の遺伝子変異をゲノム編集で修復する ー疾患研究と遺伝子治療の最先端」2017

    • Author(s)
      堀田秋津
    • Publisher
      NTS Inc.
    • Related Report
      2017 Annual Research Report
  • [Book] 実験医学増刊号 "All About ゲノム編集"2016

    • Author(s)
      石田賢太郎, 徐 淮耕, 堀田秋津
    • Total Pages
      234
    • Publisher
      羊土社
    • Related Report
      2016 Annual Research Report
  • [Book] "再生医療2015 幹細胞と疾患iPS細胞の研究最前線"「再生医療に向けたゲノム編集技術」2015

    • Author(s)
      李 紅梅, 佐伯涼太, 堀田秋津 箸・岡野 栄之, 山中 伸弥 編
    • Publisher
      羊土社
    • Related Report
      2015 Annual Research Report
  • [Book] 医学のあゆみ, 患者由来iPS細胞を用いた神経疾患研究2015

    • Author(s)
      津下 到, 鈴木茂彦, 内藤素子, 堀田秋津, 井上治久
    • Publisher
      医歯薬出版株式会社
    • Related Report
      2015 Annual Research Report
  • [Book] 病理と臨床,疾患iPS細胞研究を加速する遺伝子改変技術の進歩2015

    • Author(s)
      堀田秋津, 石田賢太郎, 佐伯涼太
    • Publisher
      文光堂
    • Related Report
      2015 Annual Research Report
  • [Book] "論文だけではわからない ゲノム編集成功の秘訣Q&A"「ヒト人工多能性幹細胞(iPS細胞)でのゲノム編集」2015

    • Author(s)
      李 紅梅, 堀田秋津 箸・山本 卓 編
    • Publisher
      羊土社
    • Related Report
      2015 Annual Research Report
  • [Patent(Industrial Property Rights)] 遺伝子変異導入方法2023

    • Inventor(s)
      堀田秋津、石田賢太郎
    • Industrial Property Rights Holder
      京都大学
    • Industrial Property Rights Type
      特許
    • Acquisition Date
      2023
    • Related Report
      Products Report
  • [Patent(Industrial Property Rights)] 低抗原性細胞の製造方法2023

    • Inventor(s)
      堀田秋津、徐淮耕、金子新、王博
    • Industrial Property Rights Holder
      国立大学法人京都大学
    • Industrial Property Rights Type
      特許
    • Acquisition Date
      2023
    • Related Report
      Products Report
  • [Patent(Industrial Property Rights)] ゲノムDNAに欠失を誘導する方法2023

    • Inventor(s)
      堀田秋津、奥嵜雄也、徐淮耕、真下知士、吉見一人、ジー ピーター デビド、北悠人
    • Industrial Property Rights Holder
      国立大学法人京都大学
    • Industrial Property Rights Type
      特許
    • Acquisition Date
      2023
    • Related Report
      Products Report
  • [Patent(Industrial Property Rights)] ゲノムDNAに欠失を誘導する方法2021

    • Inventor(s)
      堀田秋津、奥嵜雄也、徐淮耕、真下知士、吉見一人、ジー ピーター デビド、北悠人
    • Industrial Property Rights Holder
      国立大学法人京都大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2020-559274
    • Filing Date
      2021
    • Related Report
      Products Report
  • [Patent(Industrial Property Rights)] 低抗原性細胞の製造方法2020

    • Inventor(s)
      堀田秋津、徐淮耕、金子新、王博
    • Industrial Property Rights Holder
      国立大学法人京都大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2020-500578
    • Filing Date
      2020
    • Related Report
      Products Report
  • [Patent(Industrial Property Rights)] 低抗原性細胞の製造方法2018

    • Inventor(s)
      堀田秋津、徐 淮耕、金子 新、王 博
    • Industrial Property Rights Holder
      堀田秋津、徐 淮耕、金子 新、王 博
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-026421
    • Filing Date
      2018
    • Related Report
      2017 Annual Research Report
  • [Patent(Industrial Property Rights)] ゲノムDNAに欠失を誘導する方法2018

    • Inventor(s)
      堀田秋津、奥嵜雄也、徐淮耕
    • Industrial Property Rights Holder
      堀田秋津、奥嵜雄也、徐淮耕
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-231649
    • Filing Date
      2018
    • Related Report
      Products Report
  • [Patent(Industrial Property Rights)] 部位特異的塩基置換法2017

    • Inventor(s)
      堀田秋津、石田賢太郎
    • Industrial Property Rights Holder
      堀田秋津、石田賢太郎
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-139268
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report

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Published: 2015-04-16   Modified: 2025-03-27  

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