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Elucidation of molecular mechanisms of the primary piRNA pathway

Research Project

Project/Area Number 15H05585
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Molecular biology
Research InstitutionThe University of Tokyo

Principal Investigator

Ishizu Hirotsugu  東京大学, 大学院理学系研究科(理学部), 助教 (40574588)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥23,530,000 (Direct Cost: ¥18,100,000、Indirect Cost: ¥5,430,000)
Fiscal Year 2016: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
Fiscal Year 2015: ¥14,170,000 (Direct Cost: ¥10,900,000、Indirect Cost: ¥3,270,000)
KeywordspiRNA / Piwi / CRISPR / tj / 翻訳 / RNA二次構造 / CRISPR-Cas9 / RNAサイレンシング
Outline of Final Research Achievements

piRNAs in Drosophila ovarian somatic cells (OSCs) are generated only through the primary processing pathway and are loaded onto Piwi, a member of PIWI proteins. piRNAs arise mainly from intergenic repetitive elements including transposable elements (TEs) and their remnants. Besides TEs, a subset of mRNAs gives rise to ‘genic piRNAs’, mainly from their 3’ UTR, including Traffic jam (Tj) mRNA. Recently, we have identified a cis-acting 100-nt fragment in the Tj 3' UTR that is sufficient for producing artificial piRNAs from unintegrated DNA. SHAPE analysis showed that the Tj-cis element formed a specific structure. We found that point mutations within the cis element, which disrupted the proper structure, caused a failure of piRNA biogenesis from the downstream region. These results indicate that the piRNA cis element is characterized by RNA secondary structures.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • Research Products

    (9 results)

All 2016 2015 Other

All Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 3 results,  Acknowledgement Compliant: 2 results) Presentation (3 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Remarks (2 results)

  • [Journal Article] Production of Small Noncoding RNAs from the flamenco Locus Is Regulated by the gypsy Retrotransposon of Drosophila melanogaster.2016

    • Author(s)
      Guida V, Cernilogar FM, Filograna A, De Gregorio R, Ishizu H, Siomi MC, Schotta G, Bellenchi GC, Andrenacci D.
    • Journal Title

      Genetics

      Volume: 204 Issue: 2 Pages: 631-644

    • DOI

      10.1534/genetics.116.187922

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Piwi Modulates Chromatin Accessibility by Regulating Multiple Factors Including Histone H1 to Repress Transposons.2016

    • Author(s)
      Iwasaki YW, Murano K, Ishizu H, Shibuya A, Iyoda Y, Siomi MC, Siomi H, Saito K.
    • Journal Title

      Molecular Cell

      Volume: 63 Issue: 3 Pages: 408-419

    • DOI

      10.1016/j.molcel.2016.06.008

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Krimper Enforces an Antisense Bias on piRNA Pools by Binding AGO3 in the Drosophila Germline2015

    • Author(s)
      Sato K, Iwasaki YW (equal contribution), Shibuya A, Carninci P, Tsuchizawa Y, Ishizu H, Siomi MC, Siomi H
    • Journal Title

      Molecular Cell

      Volume: 59 Issue: 4 Pages: 553-563

    • DOI

      10.1016/j.molcel.2015.06.024

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb2015

    • Author(s)
      Ishizu H, Iwasaki YW, Hirakata S, Ozaki H, Iwasaki W, Siomi H, Siomi MC
    • Journal Title

      Cell Reports

      Volume: 12 Issue: 3 Pages: 429-440

    • DOI

      10.1016/j.celrep.2015.06.035

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Role of the RNA helicase, Armitage, in the primary piRNA biogenesis pathway2016

    • Author(s)
      Ishizu, H., Kinoshita, T., Siomi, MC.
    • Organizer
      The 2016 joint annual meeting of the RNA Society and the RNA Society of Japan
    • Place of Presentation
      国立京都国際会館(京都府京都市左京区)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Elucidation of the primary piRNA pathway in Drosophila ovarian somatic cells2015

    • Author(s)
      Ishizu, H., Siomi, H., Siomi, MC.
    • Organizer
      EMBO | EMBL Symposium: The Non-coding Genome
    • Place of Presentation
      EMBL Advanced Training Centre (Germany・Heidelberg)
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] piRNA生合成における前駆体RNA認識機構の解析2015

    • Author(s)
      石津大嗣
    • Organizer
      NGS現場の会第四回研究会
    • Place of Presentation
      つくば国際会議場(茨城県・つくば市)
    • Year and Date
      2015-07-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Remarks] 東京大学理学部生物化学科塩見研究室のHP

    • URL

      http://www-siomilab.biochem.s.u-tokyo.ac.jp/index.html

    • Related Report
      2016 Annual Research Report
  • [Remarks] 東京大学大学院理学系研究科生物科学専攻塩見研究室のホームページ

    • URL

      http://www-siomilab.biochem.s.u-tokyo.ac.jp/index.html

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2018-03-22  

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