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Elucidating the physiological and ecological traits of filterable bacteria

Research Project

Project/Area Number 15H05620
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Applied microbiology
Research InstitutionNational Institute of Advanced Industrial Science and Technology (2017-2018)
National Institute of Genetics (2015-2016)

Principal Investigator

Nakai Ryosuke  国立研究開発法人産業技術総合研究所, 生命工学領域, 研究員 (90637802)

Project Period (FY) 2015-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥19,630,000 (Direct Cost: ¥15,100,000、Indirect Cost: ¥4,530,000)
Fiscal Year 2018: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2017: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2016: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2015: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Keywords応用微生物 / 微生物生態 / 微生物 / 細菌
Outline of Final Research Achievements

The occurrence of ultra-small filterable bacteria capable of passing through 0.2-micrometer-pore-size filters has been reported recently. In this study, we determined the growth characteristics, physiological and biochemical properties, and genomic structures of two representative filterable strains (novel alphaproteobacterium IZ6 and Oligoflexus tunisiensis Shr3), isolated from terrestrial environments. As a result, functional genes involved in nitrogen cycle, such as nitrogen fixation and denitrification, were detected from the genome information, and the nitrogen fixation ability was confirmed by a culture experiment using the novel strain IZ6. Furthermore, metagenomic analysis of filterable bacterial populations present in environmental samples revealed the existence of novel metabolic pathways in uncultured lineages. Thus, it was disclosed that microorganisms with novel biological functions exist in the neglected filterable fraction.

Academic Significance and Societal Importance of the Research Achievements

微生物の最小サイズは一般に0.2マイクロメートル前後とされ、医薬・食品業界や生物学諸分野において孔径約0.2マイクロメートルのフィルターを用いた濾過除菌が汎用される。本研究はこの除菌フィルターを通過する新規な極小細菌群を網羅的に調べたことに学術的意義がある。同時に、そこにユニークな生物機能を有する細菌が見出されたことから、今後の生物資源・遺伝子資源の探索において、濾過性細菌が有力候補の一つになることが明確化したことにも意義があると考える。

Report

(5 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (33 results)

All 2019 2018 2017 2016 2015 Other

All Int'l Joint Research (4 results) Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Open Access: 4 results,  Peer Reviewed: 2 results,  Acknowledgement Compliant: 1 results) Presentation (18 results) (of which Int'l Joint Research: 4 results,  Invited: 13 results) Book (2 results) Remarks (2 results)

  • [Int'l Joint Research] インスブルック大学(オーストリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] クイーンズランド大学(オーストラリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] インスブルック大学(オーストリア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] スファックス・バイオテクノロジー・センター(チュニジア)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] とっても小さいやつらを追って-謎だらけの「辺境微生物」の世界2019

    • Author(s)
      中井 亮佑
    • Journal Title

      講談社ブルーバックス・ウェブサイト

      Volume: 2019.03.02

    • Related Report
      2018 Annual Research Report
    • Open Access
  • [Journal Article] 精密ろ過膜を通り抜ける「ろ過性細菌」2019

    • Author(s)
      中井 亮佑
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 77 Pages: 56-57

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Silvanigrella aquatica gen. nov., sp. nov., isolated from a freshwater lake, description of Silvanigrellaceae fam. nov. and Silvanigrellales ord. nov., reclassification of the order Bdellovibrionales in the class Oligoflexia, reclassification of the families Bacteriovoracaceae and Halobacteriovoraceae in the new order Bacteriovoracales ord. nov.,...2017

    • Author(s)
      Hahn Martin W.、Schmidt Johanna、Koll Ulrike、Rohde Manfred、Verbarg Susanne、Pitt Alexandra、Nakai Ryosuke、Naganuma Takeshi、Lang Elke
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 67 Issue: 8 Pages: 2555-2568

    • DOI

      10.1099/ijsem.0.001965

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Hidden diversity of ultra-small microorganisms2017

    • Author(s)
      中井 亮佑、玉木 秀幸
    • Journal Title

      Japanese Society of Microbial Ecology

      Volume: 32 Issue: 2 Pages: 43-50

    • DOI

      10.20709/jsmeja.32.2_43

    • NAID

      130006186005

    • ISSN
      2424-1989
    • Related Report
      2017 Annual Research Report
    • Open Access
  • [Journal Article] 超微小バクテリアは何者か?2017

    • Author(s)
      中井 亮佑
    • Journal Title

      生物工学会誌

      Volume: 95 Pages: 405-405

    • Related Report
      2017 Annual Research Report
    • Open Access
  • [Journal Article] Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria2016

    • Author(s)
      Nakai R, Fujisawa T, Nakamura Y, Baba T, Nishijima M, Karray F, Sayadi S, Isoda H, Naganuma T, Niki H
    • Journal Title

      Standards in Genomic Sciences

      Volume: 11 Issue: 1

    • DOI

      10.1186/s40793-016-0210-6

    • NAID

      120007135039

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 小さいサイズの極限 - 生物はどこまで小さくなれるのか2016

    • Author(s)
      中井 亮佑
    • Journal Title

      生物の科学 遺伝

      Volume: 70 Pages: 199-203

    • Related Report
      2015 Annual Research Report
  • [Presentation] 極域ハビタットにおける微生物探索のこれまでとこれから2019

    • Author(s)
      中井 亮佑
    • Organizer
      極域大気~アイスコア中の微生物に関する研究集会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 新時代における微生物の探索と利活用2019

    • Author(s)
      中井 亮佑
    • Organizer
      2018年度 第6回 R&B札幌大通サテライト(HiNT)セミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] New candidates for acetogenesis in early Earth2018

    • Author(s)
      Nobu MK, Nakai R, Tamazawa S, Mori H, Toyoda A, Ijiri A, Suzuki S, Kurokawa K, Kamagata Y, Tamaki H
    • Organizer
      Hadean Bioscience International Symposium 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Unique acetogenic microorganisms inhabiting the serpentinite-hosted Hakuba Happo hot spring2018

    • Author(s)
      Nakai R, Nobu MK, Tamazawa S, Mori H, Toyoda A, Ijiri A, Suzuki S, Kurokawa K, Kamagata Y, Tamaki H
    • Organizer
      Hadean Bioscience International Symposium 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] レアな環境微生物群の探索と資源化2018

    • Author(s)
      中井 亮佑
    • Organizer
      平成30年度育志賞研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 未知なる微生物を求めて-南極生態学とウイルス学の融合-2018

    • Author(s)
      中井 亮佑、堀江 真行
    • Organizer
      平成30年度育志賞研究発表会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Fascinating microorganisms in extreme environments2018

    • Author(s)
      Nakai R
    • Organizer
      Seminar at Northwest Institute of Plateau Biology, Chinese Academy of Sciences (CAS)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 辺境微生物たちの実態を探る2018

    • Author(s)
      中井 亮佑
    • Organizer
      甲南生物学セミナー/博学プロジェクトセミナー/統合ニューロバイオロジー研究所セミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 超微小細菌のしなやかな生存戦略に学ぶ2017

    • Author(s)
      中井 亮佑
    • Organizer
      第90回日本細菌学会総会
    • Place of Presentation
      仙台国際センター、宮城
    • Year and Date
      2017-03-19
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 超微小微生物の実態と新機能の追究2017

    • Author(s)
      中井 亮佑
    • Organizer
      平成29年度育志賞研究発表会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Unique bacterial phylotypes in a meltwater pond in Inhovde, East Antarctica2016

    • Author(s)
      Nakai R, Tsujimoto M, Suzuki AC, Kudoh S, Imura S, Niki H
    • Organizer
      第7回極域科学シンポジウム
    • Place of Presentation
      国立極地研究所、東京
    • Year and Date
      2016-11-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] 辺境に生きる微生物たち2016

    • Author(s)
      中井 亮佑
    • Organizer
      第278回生態研セミナー
    • Place of Presentation
      京都大学生態学研究センター、滋賀
    • Year and Date
      2016-07-15
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 極限環境生物の研究で求められるもの2015

    • Author(s)
      中井 亮佑
    • Organizer
      平成27年度日本水産学会九州支部若手の会
    • Place of Presentation
      宮崎大学、宮崎
    • Year and Date
      2015-11-07
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Fascinating microbes in extreme environments2015

    • Author(s)
      Nakai R
    • Organizer
      The 7th Japan-Taiwan-Korea International Symposium on Microbial Ecology
    • Place of Presentation
      Tsuchiura City Kijo Plaza, Ibaraki, Japan
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 辺境微生物ゲノムから見えてきたもの2015

    • Author(s)
      中井 亮佑
    • Organizer
      第9回日本ゲノム微生物学会若手の会
    • Place of Presentation
      八王子セミナーハウス、東京
    • Year and Date
      2015-09-30
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 極限環境に生きる微生物たち2015

    • Author(s)
      中井 亮佑
    • Organizer
      平成27年度育志賞研究発表会
    • Place of Presentation
      京都大学百周年時計台記念館、京都
    • Year and Date
      2015-08-31
    • Related Report
      2015 Annual Research Report
  • [Presentation] 極小細菌から探る微生物の進化2015

    • Author(s)
      中井 亮佑
    • Organizer
      日本進化学会第17回大会 ワークショップ W-15: 「飼う!」進化学
    • Place of Presentation
      中央大学、東京
    • Year and Date
      2015-08-21
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 辺境微生物たちの世界2015

    • Author(s)
      中井 亮佑
    • Organizer
      IGERセミナー(アドバンス生命理学特論)
    • Place of Presentation
      名古屋大学、名古屋
    • Year and Date
      2015-07-10
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Book] The Ecological Role of Micro-organisms in the Antarctic Environment2019

    • Author(s)
      Nakai R, Imura S, Naganuma T(担当範囲:Chapter 2 Patterns of microorganisms inhabiting Antarctic freshwater lakes with special reference to aquatic moss pillars)
    • Total Pages
      298
    • Publisher
      Springer
    • ISBN
      9783030027858
    • Related Report
      2018 Annual Research Report
  • [Book] 追跡!辺境微生物2018

    • Author(s)
      中井亮佑
    • Total Pages
      204
    • Publisher
      築地書館
    • ISBN
      9784806715719
    • Related Report
      2018 Annual Research Report
  • [Remarks] 中井 亮佑、リサーチマップ(researchmap)

    • URL

      http://researchmap.jp/rnakai/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 中井亮佑、リサーチマップ(Researchmap)

    • URL

      http://researchmap.jp/rnakai/

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2020-03-30  

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