• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Mechanisms of anhydrobiosis-associated gene regulation in the cells and tissues of chironomid Polypedilum vanderplanki.

Research Project

Project/Area Number 15H05622
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Applied biochemistry
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Gusev Oleg  国立研究開発法人理化学研究所, 科学技術ハブ推進本部, マネージャー (30711999)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥24,310,000 (Direct Cost: ¥18,700,000、Indirect Cost: ¥5,610,000)
Fiscal Year 2017: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Fiscal Year 2016: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Fiscal Year 2015: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Keywordsanhydrobiosis / CAGE / desiccation / chironomid / transcriptomics / cis-elements / tissue-specific / genome / transcriptome / non-coding RNA / PIMT / LEA proteins / HSFT / 遺伝子発現 / 乾燥耐性 / Pv11 / bi-directional promoters
Outline of Final Research Achievements

The project was aimed to uncover tissue-specific genetic mechanisms of desiccation tolerance in anhydrobiotic midge Polypedilum vanderplanki by combination of several omics techniques. We defined a number of non-coding RNA , transcribed from multi-copy conservative regions of the genome, and those with the features of enhancer RNA (i.e. non-coding RNA transcribed from enhancers in the genome) with expression patterns correlated with that of anhydrobiosis-involved genes (for examples the genes located in ARIds region of the genome.
We found that genetic mechanism of tissue specificity and broad expression of protective genes across tissues is the strategy of anhydrobiosis and can be used for biomimetics. Next, using CAGE data, we demonstrated that, heat shock transcription factor (HSF1) is one of the key regulators of transcriptional activation in response to dehydration in the cells of the anhydrobiotic chironomid. We further confirmed it by RNAi experiments.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (17 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (8 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 8 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (8 results) (of which Int'l Joint Research: 4 results,  Invited: 6 results)

  • [Int'l Joint Research] Kazan Federal University(ロシア連邦)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomidPolypedilum vanderplanki2018

    • Author(s)
      Mazin Pavel V.、Shagimardanova Elena、Kozlova Olga、Cherkasov Alexander、Sutormin Roman、Stepanova Vita V.、Stupnikov Alexey、Logacheva Maria、Penin Aleksey、Sogame Yoichiro、Cornette Richard、Tokumoto Shoko、Miyata Yugo、Kikawada Takahiro、Gelfand Mikhail S.、Gusev Oleg
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 115 Issue: 10

    • DOI

      10.1073/pnas.1719493115

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Towards water-free biobanks: long-term dry preservation at room temperature of desiccation-sensitive enzyme luciferase in air-dried insect cells2017

    • Author(s)
      2.Kikuta S, Watanabe SJ, Sato R, Gusev O, Nesmelov A, Sogame Y, Cornette R, Kikawada T
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 6540-6540

    • DOI

      10.1038/s41598-017-06945-y

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A new anhydrobiotic midge from Malawi, Polypedilum pembai sp. nov. (Diptera: Chironomidae), closely related to the desiccation tolerant midge, Polypedilum vanderplanki Hinton.2017

    • Author(s)
      3.Cornette R, Yamamoto N, Yamamoto M, Kobayashi T, Petrova NA, Gusev O, Shimura S, Kikawada T, Pemba D, Okuda T
    • Journal Title

      Systematic Entomology

      Volume: 42 Issue: 4 Pages: 814-825

    • DOI

      10.1111/syen.12248

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Genetic background of enhanced radioresistance in an anhydrobiotic insect: transcriptional response to ionizing radiations and desiccation2017

    • Author(s)
      Alina Ryabova, Kyosuke Mukae, Alexander Cherkasov, Richard Cornette, Elena Shagimardanova, Tetsuya Sakashita, Takashi Okuda, Takahiro Kikawada, Oleg Gusev
    • Journal Title

      Extremophiles

      Volume: 21 Issue: 1 Pages: 109-120

    • DOI

      10.1007/s00792-016-0888-9

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A new anhydrobiotic midge from Malawi, Polypedilum pembai sp. nov. (Diptera: Chironomidae), closely related to the desiccation tolerant midge, Polypedilum vanderplanki Hinton2017

    • Author(s)
      Richard Cornette, Nao Yamamoto, Masaru Yamamoto, Tadashi Kobayashi, Ninel A. Petrova5, Oleg Gusev, Sachiko Shimura, Takahiro Kikawada, Dylo Pemba And Takashi Okuda
    • Journal Title

      Systematic Entomology

      Volume: accepted

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Towards Water-Free Biobanks: Long-Term Dry-Preservation At Room Temperature Of Desiccation-Sensitive Enzyme Luciferase In Air-Dried Insect Cells2017

    • Author(s)
      Shingo Kikuta, Shunsuke J Watanabe, Ryoichi Sato, Oleg Gusev, Alexander Nesmelov, Yoichiro Sogame, Richard Cornette, Takahiro Kikawada
    • Journal Title

      bioRxiv

      Volume: NA Pages: 120063-120063

    • DOI

      10.1101/120063

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Establishment of gene transfer and gene silencing methods in a desiccation‐tolerant cell line, Pv112017

    • Author(s)
      Yoichiro Sogame, Jun Okada, Shingo Kikuta, Yugo Miyata, Richard Cornette, Oleg Gusev, Takahiro Kikawada
    • Journal Title

      Extremophiles

      Volume: 21 Issue: 1 Pages: 65-72

    • DOI

      10.1007/s00792-016-0880-4

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The complete mitochondrial genome of an anhydrobiotic midge Polypedilum vanderplanki (Chironomidae, Diptera)2015

    • Author(s)
      Deviatiiarov R, Kikawada T, Gusev O
    • Journal Title

      Mitochondrial DNA

      Volume: E pub Issue: 2 Pages: 1-3

    • DOI

      10.3109/19401736.2015.1115849

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] X-midge: cell and tissue-specific mechanisms of tolerance to complete desiccation in a unique insect.2018

    • Author(s)
      Oleg Gusev
    • Organizer
      OIST International Seminar Series
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] “Sleeping beauty” way to defeat aging: genomics of an anhydrobiotic insect2018

    • Author(s)
      Oleg Gusev
    • Organizer
      International Conference "Interventions to extend healthspan and lifespan"
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Genetic background of extraordinary adaptivity of non-biting midges (Chironomidae) to extreme environmental conditions2017

    • Author(s)
      Oleg Gusev
    • Organizer
      3rd Tokyo Vector Encounter
    • Place of Presentation
      Jikai University, Tokyo
    • Year and Date
      2017-03-09
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Chromatin under extreme desiccation:3D organization of genome of an anhydrobiotic midge Polypedilum vanderplanki2017

    • Author(s)
      Oleg Gusev
    • Organizer
      ConBio-2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Genetic background of extraordinary adaptivity of non-biting midges Chironomidae to extreme environmental conditions.2017

    • Author(s)
      Oleg Gusev
    • Organizer
      3nd Tokyo Vector Encounter
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Single-nucleotide resolution map of promoters expression in anhydrobiotic midge provides new insights on mechanisms of tissue-specific desiccation resistance2016

    • Author(s)
      R. Deviatiiarov, A. Kozakova, A. Danilina, R. Cornette, E. Shagimardanova, M. de Hoon, T. Kikawada, O.A. Gusev
    • Organizer
      MSBJ2016
    • Place of Presentation
      Yokohama
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Anhydrobiosis in the sleeping chironomid: genome-wide adaptions to extreme desiccation2016

    • Author(s)
      Oleg Gusev
    • Organizer
      The 1st Workshop on Biology of Intriguing Creatures
    • Place of Presentation
      Sapporo, Hokkaido University
    • Year and Date
      2016-10-22
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Functional Genomics of Anhydrobiosis: from organisms to technologies of bio-materials preservation.2015

    • Author(s)
      Oleg Gusev
    • Organizer
      PhysBioTech-2015
    • Place of Presentation
      Moscow Physico-Technical Institute, Moscow
    • Year and Date
      2015-04-29
    • Related Report
      2015 Annual Research Report
    • Invited

URL: 

Published: 2015-04-16   Modified: 2022-09-01  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi