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Identification of functional compounds and biosynthetic genes by metagenomic methods

Research Project

Project/Area Number 15H05629
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Aquatic life science
Research InstitutionHokkaido University

Principal Investigator

Fujita Masaki  北海道大学, 水産科学研究院, 准教授 (30505251)

Research Collaborator Imai Ichiro  
Kimura Nobutada  
Project Period (FY) 2015-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥24,830,000 (Direct Cost: ¥19,100,000、Indirect Cost: ¥5,730,000)
Fiscal Year 2018: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2017: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥13,520,000 (Direct Cost: ¥10,400,000、Indirect Cost: ¥3,120,000)
Keywordsメタゲノム / 化学生態学 / 海洋天然物 / クオラムセンシング / 殺藻細菌 / 生合成 / シデロフォア / 赤潮 / アオコ / 殺藻物質 / 海洋細菌 / 天然物化学 / 生物有機化学
Outline of Final Research Achievements

In order to clarify the chemical communication among the environmental microorganisms, general scheme consisted of following methods and knowledges; metagenomics, biosynthesis, isolation and structure elucidation, bioinformatics, and variety of bioassays, were established.
Species, compounds, and biosynthetic genes clusters were identified from algicidal bacteria obtained from algal-blooming environmental samples. Furthermore, mechanisms of production and action of the active compounds were revealed which are important for practical usage of algicidal bacteria.
From the metagenomic clones, novel super-agonist of quorum sensing whose structure was completely different from the known signaling molecule was determined. Biosynthetic gene cluster of anti-tumor substance and its producer were identified from marine sponge symbiotic bacteria by metagenomics analysis. The producer is a quite unique bacterium belongs to the putative novel phylum, and exist in the specific marine sponge.

Academic Significance and Societal Importance of the Research Achievements

環境微生物、生合成、単離構造決定など異なる分野を統合して、環境中での微生物間化学相互作用を解析する試みは技術的にも困難でありほとんどなかった。その中で、DNA配列決定法とメタゲノム法の進展を取り入れ、体系的に研究するための方法論を確立できたことは、環境中で生じる未解明生命現象をとらえる上で大きな進歩である。
その結果、赤潮・アオコの生物学的防除につながる発見や、産業利用可能なクオラムセンシング物質の新規スーパーアゴニストの同定(特許取得済み)、カイメン共生微生物の有効利用を可能にする共生菌群の全ゲノム解明は、環境中での微生物機能を実用化する上でのモデルケースとなりうるものである。

Report

(5 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (28 results)

All 2019 2018 2017 2016 2015 Other

All Int'l Joint Research (2 results) Journal Article (5 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 5 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (17 results) (of which Int'l Joint Research: 5 results,  Invited: 2 results) Book (1 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 1 results)

  • [Int'l Joint Research] ITQB-NOVA(ポルトガル)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Universidade Nova de Lisboa(ポルトガル)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Structure and reactivity of a siderophore-interacting protein from the marine bacterium Shewanella reveals unanticipated functional versatility2018

    • Author(s)
      Inês Trindade, José M. Silva, Bruno M. Fonseca2, Teresa Catarino3, Masaki Fujita, Pedro M. Matias, Elin Moe and Ricardo O. Louro
    • Journal Title

      J. Biol. Chem.

      Volume: 294 Issue: 1 Pages: 157-167

    • DOI

      10.1074/jbc.ra118.005041

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Cloning of the Bisucaberin B Biosynthetic Gene Cluster from the Marine Bacterium Tenacibaculum mesophilum, and Heterologous Production of Bisucaberin B2018

    • Author(s)
      Masaki J. Fujita, Yusuke Goto and Ryuichi Sakai
    • Journal Title

      Mar. Drugs

      Volume: 16 Issue: 9 Pages: 342-353

    • DOI

      10.3390/md16090342

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Elemental composition and ultrafine structure of the skeleton in shell-bearing protists-A case study of phaeodarians and radiolarians2018

    • Author(s)
      Nakamura, Yasuhide; Iwata, Izumi; Hori, Rie S.; Uchiyama, Naomi; Tuji, Akihiro; Fujita, Masaki J.; Honda, Daiske; Ohfuji, Hiroaki
    • Journal Title

      J. Struct. Biol.

      Volume: 204 Issue: 1 Pages: 45-51

    • DOI

      10.1016/j.jsb.2018.06.008

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] KB343, a Cyclic Tris-guanidine Alkaloid from Palauan Zoantharian Epizoanthus illoricatus2018

    • Author(s)
      Ken Matsumura, Tohru Taniguchi, James D. Reimer, Shuntaro Noguchi, Masaki J. Fujita, and Ryuichi Sakai
    • Journal Title

      Org. Lett.

      Volume: 20 Issue: 10 Pages: 3039-3043

    • DOI

      10.1021/acs.orglett.8b01069

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] N-Methyl-β-carbolinium Salts and an N-Methylated 8-Oxoisoguanine as Acetylcholinesterase Inhibitors from a Solitary Ascidian, Cnemidocarpa irene2017

    • Author(s)
      Yohei Tadokoro, Teruaki Nishikawa, Taichi Ichimori, Satoko Matsunaga, Masaki J Fujita, Ryuichi Sakai
    • Journal Title

      ACS Omega

      Volume: 2 Issue: 3 Pages: 1074-1080

    • DOI

      10.1021/acsomega.7b00127

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Mycale Sponge Inherits Mycalolide Producers Through2019

    • Author(s)
      藤田雅紀
    • Organizer
      第4回 部局横断シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Alteromonas 属殺藻細菌由来シデロフォアの同定と機能解析2019

    • Author(s)
      神手大輝、酒井隆一、藤田雅紀
    • Organizer
      平成31年度日本水産学会春季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 環境にやさしい赤潮対策~細菌による赤潮防除~2018

    • Author(s)
      神田衛、藤田雅紀
    • Organizer
      HAKODATEアカデミックリンク2018
    • Related Report
      2018 Annual Research Report
  • [Presentation] 五稜郭の細菌でアオコを防ぐ!2018

    • Author(s)
      加藤健、藤田雅紀
    • Organizer
      HAKODATEアカデミックリンク2018
    • Related Report
      2018 Annual Research Report
  • [Presentation] Mycale Sponge Inherits Mycalolide Producers Through Vertical Microbial Transmission2018

    • Author(s)
      Masaki Fujita, Kentaro Takada
    • Organizer
      Gordon Research Conference, Marine Natural Products
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Identification of a Novel Mycalolide from Fresh Sponge Extract by LC-MS Principal Component Analysis2018

    • Author(s)
      Masaki Fujita, Risa Nitanai, Ryuichi Sakai
    • Organizer
      Gordon Research Conference, Marine Natural Products
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Identification and Production Mechanisms of Algicidal Compounds from Alteromonas sp.2018

    • Author(s)
      Masaki Fujita, Saki Umetsu, Ichiro Imai, Ryuichi Sakai
    • Organizer
      Gordon Research Conference, Marine Natural Products
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] LCMS主成分分析法により見出した新規マイカロライド類の同定2018

    • Author(s)
      藤田雅紀、似内梨紗、酒井隆一
    • Organizer
      平成30年度日本水産学会春季大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Biosynthetic Origin of Mycalolides from Marine Sponge Mycale sp.2018

    • Author(s)
      Masaki Fujita, Risa Nitanai, Yosuke Itaka, Ryuichi Sakai
    • Organizer
      JSFS International Symposium (85 anniversary)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Alteromonas属由来の殺藻物質の生産と殺藻様式に関する研究2017

    • Author(s)
      梅津早希、今井一郎、酒井隆一、藤田雅紀
    • Organizer
      平成29年度日本水産学会春季大会
    • Place of Presentation
      東京海洋大学(東京都港区)
    • Year and Date
      2017-03-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] Biosynthetic Gene Cluster and Potential Producer of the Marine Sponge Derived Macrolide, Mycalolides2017

    • Author(s)
      藤田雅紀
    • Organizer
      US-Japan Seminar on the Biosynthesis of Natural Products for Young Researchers
    • Place of Presentation
      東京工業大学(東京都目黒区)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Alteromonas属海洋細菌由来の赤潮藻類殺藻物質2016

    • Author(s)
      梅津早希、今井一郎、酒井隆一、藤田雅紀
    • Organizer
      第58回天然有機化合物討論会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2016-09-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] Alteromonas属海洋細菌由来の赤潮殺藻物質2016

    • Author(s)
      梅津 早希、今井 一郎、酒井 隆一、藤田 雅紀
    • Organizer
      平成28年度日本水産学会春季大会
    • Place of Presentation
      東京海洋大学(東京都品川区)
    • Year and Date
      2016-03-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] 遺伝子から探す・作る海洋天然物2016

    • Author(s)
      藤田雅紀
    • Organizer
      2016年度27年度日本化学会北海道支部会
    • Place of Presentation
      北海道大学(北海道函館市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] メタゲノム由来新規クオラムセンシング物質の研究2015

    • Author(s)
      伊藤 秀輝、木村 信忠、奈須野 恵里、藤田 雅紀
    • Organizer
      平成27年度日本化学会北海道支部会
    • Place of Presentation
      北海道教育大学函館校(北海道函館市)
    • Year and Date
      2015-07-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] Alteromonas属殺藻細菌由来二次代謝産物と生合成遺伝子の解析2015

    • Author(s)
      梅津 早希、今井 一郎、酒井 隆一、藤田 雅紀
    • Organizer
      第50回天然物化学談話会
    • Place of Presentation
      グリーンピア岩沼モンタナリゾート(宮城県岩沼市)
    • Year and Date
      2015-07-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 海綿メタゲノムからのマイカロライド生合成遺伝子探索2015

    • Author(s)
      藤田 雅紀、酒井 隆一、伊勢 優史
    • Organizer
      第29回海洋生物活性談話会
    • Place of Presentation
      筑波大学下田臨海実験所(静岡県下田市)
    • Year and Date
      2015-05-09
    • Related Report
      2015 Annual Research Report
  • [Book] 海をまるごとサイエンス2018

    • Author(s)
      藤田雅紀 分担
    • Total Pages
      128
    • Publisher
      KAIBUNDO
    • ISBN
      9784303800017
    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 新規インドロキナゾリン型化合物およびその製造方法2017

    • Inventor(s)
      木村信忠、藤田雅紀
    • Industrial Property Rights Holder
      木村信忠、藤田雅紀
    • Industrial Property Rights Type
      特許
    • Filing Date
      2017
    • Acquisition Date
      2018
    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 新規インドロキナゾリン型化合物およびその製造方法2017

    • Inventor(s)
      藤田雅紀 木村信忠
    • Industrial Property Rights Holder
      藤田雅紀 木村信忠
    • Industrial Property Rights Type
      特許
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 新規インドロキナゾリン型化合物およびその製造方法2016

    • Inventor(s)
      木村信忠、藤田雅紀
    • Industrial Property Rights Holder
      木村信忠、藤田雅紀
    • Industrial Property Rights Type
      特許
    • Filing Date
      2016-12-27
    • Related Report
      2016 Annual Research Report

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Published: 2015-04-16   Modified: 2023-12-25  

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