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Macroscopic Theory for Robustness and Plasticity in Cells

Research Project

Project/Area Number 15H05746
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Biological physics/Chemical physics/Soft matter physics
Research InstitutionThe University of Tokyo

Principal Investigator

KANEKO Kunihiko  東京大学, 大学院総合文化研究科, 教授 (30177513)

Co-Investigator(Kenkyū-buntansha) 古澤 力  国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー (00372631)
若本 祐一  東京大学, 大学院総合文化研究科, 准教授 (30517884)
Project Period (FY) 2015-05-29 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥182,520,000 (Direct Cost: ¥140,400,000、Indirect Cost: ¥42,120,000)
Fiscal Year 2019: ¥31,850,000 (Direct Cost: ¥24,500,000、Indirect Cost: ¥7,350,000)
Fiscal Year 2018: ¥34,060,000 (Direct Cost: ¥26,200,000、Indirect Cost: ¥7,860,000)
Fiscal Year 2017: ¥34,190,000 (Direct Cost: ¥26,300,000、Indirect Cost: ¥7,890,000)
Fiscal Year 2016: ¥33,800,000 (Direct Cost: ¥26,000,000、Indirect Cost: ¥7,800,000)
Fiscal Year 2015: ¥48,620,000 (Direct Cost: ¥37,400,000、Indirect Cost: ¥11,220,000)
Keywords生命現象の物理 / 進化 / マクロ状態論 / 1細胞計測 / ゆらぎ
Outline of Final Research Achievements

Through theory, evolutionary simulation, and experiments on the adaptation and evolution of E. coli, we uncovered and formulated universal laws of fluctuation and response of cells, and constructed a quantitative theory of the state of life. Specifically, we clarified the relationship between cell growth fluctuation and proliferation, the law between proliferation and death, the low-dimensional constraint of phenotype as a result of robustness, and the proportionality in the change of phenotype due to adaptation and evolution, together with prediction on resistance of bacteria to antibiotics. Also, the central dogma of molecular biology on separation of function and information is derived from spontaneous symmetry breaking.

Academic Significance and Societal Importance of the Research Achievements

生命科学において膨大なデータが得られている現在、そこから「生命とは何か」の答えにつながる、生命状態論を構築することは国民の知的、文化的要請に答えるものであり、実際、本成果をまとめた著「普遍生物学」は好評裡に受け入れられている。細胞適応の定量的記述はその増殖、生存の制御にもつながり、表現型進化の方向性の発見とその記述は、進化の描像の革新だけでなく進化工学としても意義がある。一方、細菌の抗生物質への順応や進化による耐性の理解は医学的にも重要な成果である。

Assessment Rating
Verification Result (Rating)

A

Assessment Rating
Result (Rating)

A: Progress in the research is steadily towards the initial goal. Expected research results are expected.

Report

(11 results)
  • 2020 Research Progress Assessment (Verification Result) ( PDF )
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Abstract ( PDF )   Comments on the Screening Results ( PDF )   Annual Research Report
  • Research Products

    (270 results)

All 2020 2019 2018 2017 2016 2015

All Journal Article (61 results) (of which Int'l Joint Research: 13 results,  Peer Reviewed: 61 results,  Open Access: 50 results,  Acknowledgement Compliant: 8 results) Presentation (203 results) (of which Int'l Joint Research: 84 results,  Invited: 99 results) Book (4 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] Homeorhesis in Waddington's landscape by epigenetic feedback regulation2020

    • Author(s)
      Matsushita Yuuki、Kaneko Kunihiko
    • Journal Title

      Physical Review Research

      Volume: 2 Issue: 2 Pages: 023083-023083

    • DOI

      10.1103/physrevresearch.2.023083

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Suppression of antibiotic resistance evolution by single-gene deletion2020

    • Author(s)
      Horinouchi Takaaki、Maeda Tomoya、Kotani Hazuki、Furusawa Chikara
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 4178-4178

    • DOI

      10.1038/s41598-020-60663-6

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transition in relaxation paths in allosteric molecules: Enzymatic kinetically constrained model2020

    • Author(s)
      T.S. Hatakeyama, K. Kaneko
    • Journal Title

      Phys. Rev. Research

      Volume: 2 Issue: 1

    • DOI

      10.1103/physrevresearch.2.012005

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic Ratchet: Spontaneous Adaptation via Stochastic Gene Expression2020

    • Author(s)
      Y. Himeoka, K. Kaneko
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 459-459

    • DOI

      10.1038/s41598-019-57372-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Advantage of Leakage of Essential Metabolites for Cells2020

    • Author(s)
      J.F. Yamagishi, N. Saito and K. Kaneko
    • Journal Title

      Phys. Rev. Lett.

      Volume: 124 Issue: 4 Pages: 048101-048101

    • DOI

      10.1103/physrevlett.124.048101

    • NAID

      130008156522

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evolutionary dimension reduction in phenotypic space2020

    • Author(s)
      T. U. Sato, K. Kaneko
    • Journal Title

      Phys. Rev. Research

      Volume: 2 (1) Issue: 1 Pages: 013197-013197

    • DOI

      10.1103/physrevresearch.2.013197

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Long-range Correlation in Protein Dynamics: Confirmation by Structural Data and Normal Mode Analysis2020

    • Author(s)
      Qian-Yuan Tang and Kunihiko Kaneko
    • Journal Title

      PLoS Comp. Biol.

      Volume: 16 (2) Issue: 2 Pages: e1007670-e1007670

    • DOI

      10.1371/journal.pcbi.1007670

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Estimating Cellular Transcriptomes from Raman Spectra2020

    • Author(s)
      小林鉱石, 亀井健一郎, 中岡秀憲, 若本祐一
    • Journal Title

      Seibutsu Butsuri

      Volume: 60 Issue: 2 Pages: 108-110

    • DOI

      10.2142/biophys.60.108

    • NAID

      130007818360

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Universal Laws in Phenotypic Changes through Adaptation and Evolution2019

    • Author(s)
      金子邦彦,古澤力
    • Journal Title

      Butsuri

      Volume: 74 Issue: 3 Pages: 137-145

    • DOI

      10.11316/butsuri.74.3_137

    • NAID

      130007690582

    • ISSN
      0029-0181, 2423-8872
    • Year and Date
      2019-03-05
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes2019

    • Author(s)
      Kamimura Atsushi、Matsubara Yoshiya J.、Kaneko Kunihiko、Takeuchi Nobuto
    • Journal Title

      PLOS Computational Biology

      Volume: 15 Issue: 6 Pages: e1007094-e1007094

    • DOI

      10.1371/journal.pcbi.1007094

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular Diversity and Network Complexity in Growing Protocells2019

    • Author(s)
      Kamimura Atsushi、Kaneko Kunihiko
    • Journal Title

      Life

      Volume: 9 Issue: 2 Pages: 53-53

    • DOI

      10.3390/life9020053

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The origin of the central dogma through conflicting multilevel selection2019

    • Author(s)
      N. Takeuchi, K. Kaneko
    • Journal Title

      Proc. R. Soc. B

      Volume: 286 Issue: 1912 Pages: 20191359-20191359

    • DOI

      10.1098/rspb.2019.1359

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] High-throughput identification of the sensitivities of an Escherichia coli ΔrecA mutant strain to various chemical compounds2019

    • Author(s)
      Maeda Tomoya、Horinouchi Takaaki、Sakata Natsue、Sakai Aki、Furusawa Chikara
    • Journal Title

      The Journal of Antibiotics

      Volume: - Issue: 7 Pages: 1-8

    • DOI

      10.1038/s41429-019-0160-5

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Theoretical modeling reveals that regulatory T cells increase T-cell interaction with antigen-presenting cells for stable immune tolerance2019

    • Author(s)
      Yamaguchi Tomoyuki、Teraguchi Shunsuke、Furusawa Chikara、Machiyama Hiroaki、Watanabe Tomonobu M、Fujita Hideaki、Sakaguchi Shimon、Yanagida Toshio
    • Journal Title

      International Immunology

      Volume: 31 Issue: 11 Pages: 743-753

    • DOI

      10.1093/intimm/dxz043

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of Bacterial Laboratory Evolution toward Prediction, Control, and Macroscopic State Theory of Evolution2019

    • Author(s)
      FURUSAWA Chikara、HORINOUCHI Takaaki
    • Journal Title

      Seibutsu Butsuri

      Volume: 59 Issue: 5 Pages: 262-265

    • DOI

      10.2142/biophys.59.262

    • NAID

      130007718911

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 細胞のラマンスペクトルから遺伝子発現プロファイルを推定する新手法2019

    • Author(s)
      亀井健一郎, 小林鉱石, 中岡秀憲, 若本祐一
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 77(1) Pages: 17-21

    • NAID

      40021786782

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 適応と進化におけるマクロ現象論――表現型変化の低次元拘束と揺らぎ―応答関係2019

    • Author(s)
      金子邦彦,古澤力
    • Journal Title

      日本物理学会誌

      Volume: 74(3) Pages: 137-145

    • NAID

      130007690582

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Linear Regression Links Transcriptomic Data and Cellular Raman Spectra2018

    • Author(s)
      Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Kamei, K. F., Nosho, K., Fukushima, H., Kanesaki, Y., Yajima, S., Masaki, H., Ohta, K., Wakamoto, Y.
    • Journal Title

      Cell Systems

      Volume: 7 Issue: 1 Pages: 104-117

    • DOI

      10.1016/j.cels.2018.05.015

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Toward prediction and control of antibiotic-resistance evolution2018

    • Author(s)
      Furusawa Chikara、Horinouchi Takaaki、Maeda Tomoya
    • Journal Title

      Current Opinion in Biotechnology

      Volume: 54 Pages: 45-49

    • DOI

      10.1016/j.copbio.2018.01.026

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Formation of dominant mode by evolution in biological systems2018

    • Author(s)
      Furusawa Chikara、Kaneko Kunihiko
    • Journal Title

      Physical Review E

      Volume: 97 Issue: 4 Pages: 1-24

    • DOI

      10.1103/physreve.97.042410

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Macroscopic Theory for Evolving Biological Systems Akin to Thermodynamics2018

    • Author(s)
      K. Kaneko and C. Furusawa
    • Journal Title

      Ann. Rev. Biophys

      Volume: 47 Issue: 1 Pages: 273-290

    • DOI

      10.1146/annurev-biophys-070317-033155

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Boundary-Induced Pattern Formation from Uniform Temporal Oscillation2018

    • Author(s)
      T,Kohsokabe and K. Kaneko
    • Journal Title

      Chaos

      Volume: 28 Issue: 4 Pages: 045110-045110

    • DOI

      10.1063/1.5013280

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Kinetic selection of template polymer with complex sequences2018

    • Author(s)
      Y. J. Matsubara and K. Kaneko
    • Journal Title

      Phys. Rev. Lett.

      Volume: 121 Issue: 11 Pages: 118101-118101

    • DOI

      10.1103/physrevlett.121.118101

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cooperative reliable response from sloppy gene-expression dynamics2018

    • Author(s)
      M. Inoue, K. Kaneko
    • Journal Title

      EPL

      Volume: 124 Issue: 3 Pages: 38002-38002

    • DOI

      10.1209/0295-5075/124/38002

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exponential growth for self-reproduction in a catalytic reaction network: relevance of a minority molecular species and crowdedness2018

    • Author(s)
      A.Kamimura and K. Kaneko
    • Journal Title

      New J. Phys.

      Volume: 20 Issue: 3 Pages: 035001-035001

    • DOI

      10.1088/1367-2630/aaaf37

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of Drug Resistance Using Experimental Evolution2017

    • Author(s)
      C. Furusawa
    • Journal Title

      YAKUGAKU ZASSHI

      Volume: 137 Issue: 4 Pages: 373-376

    • DOI

      10.1248/yakushi.16-00235-1

    • NAID

      130005529539

    • ISSN
      0031-6903, 1347-5231
    • Year and Date
      2017-04-01
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Aging, mortality, and the fast growth trade-off of Schizosaccharomyses pombe2017

    • Author(s)
      Nakaoka, H., Wakamoto, Y.
    • Journal Title

      PLoS Biology

      Volume: 15 Issue: 6 Pages: e2001109-e2001109

    • DOI

      10.1371/journal.pbio.2001109

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Measurement of Environmental Response and Selection at the Single-Cell Level2017

    • Author(s)
      中岡秀憲, 梅谷実樹, 若本祐一
    • Journal Title

      KAGAKU TO SEIBUTSU

      Volume: 55 Issue: 4 Pages: 263-268

    • DOI

      10.1271/kagakutoseibutsu.55.263

    • NAID

      130006516066

    • ISSN
      0453-073X, 1883-6852
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metabolic dynamics restricted by conserved carriers: Jamming and feedback2017

    • Author(s)
      Hatakeyama Tetsuhiro S.、Furusawa Chikara
    • Journal Title

      PLOS Computational Biology

      Volume: 13 Issue: 11 Pages: e1005847-e1005847

    • DOI

      10.1371/journal.pcbi.1005847

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Prediction of Cross-resistance and Collateral Sensitivity by Gene Expression profiles and Genomic Mutations2017

    • Author(s)
      Horinouchi Takaaki、Suzuki Shingo、Kotani Hazuki、Tanabe Kumi、Sakata Natsue、Shimizu Hiroshi、Furusawa Chikara
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s41598-017-14335-7

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improvement of isopropanol tolerance of Escherichia coli using adaptive laboratory evolution and omics technologies2017

    • Author(s)
      Horinouchi Takaaki、Sakai Aki、Kotani Hazuki、Tanabe Kumi、Furusawa Chikara
    • Journal Title

      Journal of Biotechnology

      Volume: 255 Pages: 47-56

    • DOI

      10.1016/j.jbiotec.2017.06.408

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Acceleration and Suppression of Resistance Development by Antibiotic Combinations2017

    • Author(s)
      S. Suzuki, T. Horinouchi and C. Furusawa
    • Journal Title

      BMC Genomics

      Volume: 18 Issue: 1 Pages: 328-328

    • DOI

      10.1186/s12864-017-3718-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theory for Transitions Between Exponential and Stationary Phases: Universal Laws for Lag Time2017

    • Author(s)
      Himeoka Yusuke、Kaneko Kunihiko
    • Journal Title

      Physical Review X

      Volume: 7 Issue: 2 Pages: 021049-021049

    • DOI

      10.1103/physrevx.7.021049

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Robustness of spatial patterns in buffered reaction-diffusion systems and its reciprocity with phase plasticity2017

    • Author(s)
      Tetsuhiro S. Hatakeyama, Kunihiko Kaneko
    • Journal Title

      Physical Review E Rapid Communications

      Volume: 95 Issue: 3 Pages: 030201-030201

    • DOI

      10.1103/physreve.95.030201

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Conceptualizing the origin of life in terms of evolution2017

    • Author(s)
      Takeuchi N.、Hogeweg P.、Kaneko K.
    • Journal Title

      Philosophical Transactions of the Royal Society A

      Volume: 375 Issue: 2109 Pages: 20160346-20160346

    • DOI

      10.1098/rsta.2016.0346

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The origin of a primordial genome through spontaneous symmetry breaking2017

    • Author(s)
      Takeuchi Nobuto、Hogeweg Paulien、Kaneko Kunihiko
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 250-250

    • DOI

      10.1038/s41467-017-00243-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Stronger selection can slow down evolution driven by recombination on a smooth fitness landscape2017

    • Author(s)
      Ueda Masahiko、Takeuchi Nobuto、Kaneko Kunihiko
    • Journal Title

      PLoS One

      Volume: 12 Issue: 8 Pages: e0183120-e0183120

    • DOI

      10.1371/journal.pone.0183120

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamics Robustness of Linear Signaling Cascades2017

    • Author(s)
      J.T.Young, T.S.Hatakeyama, K. Kaneko
    • Journal Title

      PLoS Comp. Biol.

      Volume: 13 Issue: 3 Pages: e1005434-e1005434

    • DOI

      10.1371/journal.pcbi.1005434

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Robustness and Plasticity in Biological Rhythms2017

    • Author(s)
      畠山哲央、金子邦彦
    • Journal Title

      Seibutsu Butsuri

      Volume: 57 Issue: 4 Pages: 186-190

    • DOI

      10.2142/biophys.57.186

    • NAID

      130005866062

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Omics-Integrated Approach for Metabolic State Analysis of Microbial Processes: Innovations and Future Directions2017

    • Author(s)
      H. Shimizu, C. Furusawa, T. Hirasawa, K. Yoshikawa, Y. Toya, T. Shirai and F. Matsuda
    • Journal Title

      Appl. Bioeng

      Volume: 5 Pages: 213-236

    • DOI

      10.1002/9783527800599.ch7

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Expression profiling of antibiotic resistant bacteria obtained by laboratory evolution2017

    • Author(s)
      S. Suzuki, T. Horinouchi and C. Furusawa
    • Journal Title

      Methods Mol Biol.

      Volume: 1520 Pages: 263-279

    • DOI

      10.1007/978-1-4939-6634-9_16

    • ISBN
      9781493966325, 9781493966349
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Inferring fitness landscapes and selection on phenotypic states from single-cell genealogical data2017

    • Author(s)
      T. Nozoe, E. Kussell, and Y. Wakamoto
    • Journal Title

      PLoS Genetics

      Volume: 13 Issue: 3 Pages: e1006653-e1006653

    • DOI

      10.1371/journal.pgen.1006653

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates2016

    • Author(s)
      Yamagishi Jumpei F、Saito Nen、Kaneko Kunihiko
    • Journal Title

      PLoS Comp Biol

      Volume: 12 Issue: 10 Pages: e1005042-e1005042

    • DOI

      10.1371/journal.pcbi.1005042

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evolutionarily stable disequilibrium: Endless dynamics of evolution in a stationary population2016

    • Author(s)
      N. Takeuchi, K. Kaneko and P. Hogeweg
    • Journal Title

      Proc. Roy. Soc. B

      Volume: 283 Issue: 1830 Pages: 20153109-20153109

    • DOI

      10.1098/rspb.2015.3109

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Enzyme oscillation can enhance the thermodynamic efficiency of cellular metabolism: Consequence of anti-phase coupling between reaction flux and affinity2016

    • Author(s)
      Y. Himeoka, K. Kaneko
    • Journal Title

      Physical Biology

      Volume: 13 Issue: 2 Pages: 026002-026002

    • DOI

      10.1088/1478-3975/13/2/026002

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Optimal size for emergence of self-replicating polymer system2016

    • Author(s)
      Y. J. Matsubara and K. Kaneko
    • Journal Title

      Phys. Rev. E

      Volume: 93 Issue: 3 Pages: 032503-032503

    • DOI

      10.1103/physreve.93.032503

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Requirements for efficient cell-type proportioning: regulatory timescales, stochasticity and lateral inhibition2016

    • Author(s)
      B. Pfeuty and K. Kaneko
    • Journal Title

      Physical Biology

      Volume: 13 Issue: 2 Pages: 026007-026007

    • DOI

      10.1088/1478-3975/13/2/026007

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Inverse Relationship Between Molecular Diversity And Resource Abundances2016

    • Author(s)
      A.Kamimura and K. Kaneko
    • Journal Title

      Phys. Rev. E

      Volume: 93 Issue: 6 Pages: 062419-062419

    • DOI

      10.1103/physreve.93.062419

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evolution-Development Congruence in Pattern Formation Dynamics: Bifurcations in Gene Expressions and Regulation of Networks Structures2016

    • Author(s)
      T. Kohsokabe and K. Kaneko
    • Journal Title

      J. Exp Zoology B

      Volume: 326 Issue: 1 Pages: 61-84

    • DOI

      10.1002/jez.b.22666

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Robust and Accurate Discrimination of Self/Non-Self Antigen Presentations by Regulatory T Cell Suppression.2016

    • Author(s)
      Furusawa, C. and T. Yamaguchi
    • Journal Title

      PLoS One

      Volume: 11 Issue: 9 Pages: e0163134-e0163134

    • DOI

      10.1371/journal.pone.0163134

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Phenotypic changes associated with the fitness cost in antibiotic resistant Escherichia coli strains2016

    • Author(s)
      Shingo Suzuki, Takaaki Horinouchi, Chikara Furusawa
    • Journal Title

      Molecular Biosystems

      Volume: Vol.12  No.2 Issue: 2 Pages: 414-420

    • DOI

      10.1039/c5mb00590f

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 大腸菌進化実験を用いた遺伝子発現量からの抗生物質耐性メカニズムの解析2016

    • Author(s)
      古澤力, 鈴木真吾, 堀之内貴明
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 72 Pages: 138-140

    • NAID

      40020762041

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Microfluidic lighthouse: an omnidirectional gradient generator2016

    • Author(s)
      Akihiko Nakajima, Motohiko Ishida, Taihei Fujimori, Yuichi Wakamoto, Satoshi Sawai
    • Journal Title

      Lab on Chip

      Volume: 16(22) Issue: 22 Pages: 4382-4394

    • DOI

      10.1039/c6lc00898d

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Evolutionarily stable disequilibrium: Endless dynamics of evolution in a stationary population2016

    • Author(s)
      Takeuchi N., Kaneko K., and Hogeweg P.
    • Journal Title

      Proc.Royal Society B.

      Volume: 未定

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Noise-driven growth rate gain in clonal cellular populations2016

    • Author(s)
      Hashimoto, M., Nozoe, T., Nakaoka, H., Okura, R., Akiyoshi, S., Kaneko, K., Kussell, E., Wakamoto, Y.
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 113 Issue: 12 Pages: 3251-3256

    • DOI

      10.1073/pnas.1519412113

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Epigenetic Canalization of Cell-type Proportions2016

    • Author(s)
      B. Pfeuty and K. Kaneko
    • Journal Title

      Physical Biology

      Volume: 未定

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Bacterial autoimmunity due to a restriction-modification system2016

    • Author(s)
      Pleska, M., Qian, L., Okura, R., Bergmiller, T., Wakamoto, Y., Kussell, E., Guet, C. C.
    • Journal Title

      Current Biology

      Volume: 26 Issue: 3 Pages: 404-409

    • DOI

      10.1016/j.cub.2015.12.041

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Global relationships in fluctuation and response in adaptive evolution2015

    • Author(s)
      Chikara Furusawa and Kunihiko Kaneko
    • Journal Title

      Jour. Roy. Soc. Interfac

      Volume: Vol.12 No.109 Issue: 109 Pages: 20150482-20150482

    • DOI

      10.1098/rsif.2015.0482

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Phenotypic convergence in bacterial adaptive evolution to ethanol stress2015

    • Author(s)
      Takaaki Horinouchi, Shingo Suzuki, Takashi Hirasawa, Naoaki Ono, Tetsuya Yomo, Hiroshi Shizmiu, Chikara Furusawa
    • Journal Title

      BMC Evo. Biol.

      Volume: 15 Issue: 1 Pages: 180-180

    • DOI

      10.1186/s12862-015-0454-6

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bacterial transcriptome reorganization in thermal adaptive evolution2015

    • Author(s)
      B-W. Ying, Y. Matsumoto, K. Kitahara, S. Suzuki, N. Ono, C. Furusawa, T. Kishimoto, T. Yomo
    • Journal Title

      BMC Genomics

      Volume: 16 Issue: 1 Pages: 1-11

    • DOI

      10.1186/s12864-015-1999-x

    • NAID

      120007136181

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 細胞表現型ゆらぎの適応的意義と1細胞統計2015

    • Author(s)
      若本祐一
    • Journal Title

      顕微鏡

      Volume: 50 Pages: 86-91

    • NAID

      130007701767

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Presentation] 必須代謝物の漏出による細胞の成長促進2020

    • Author(s)
      山岸純平, 斉藤稔, 金子邦彦
    • Organizer
      第75回 日本物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 遅いモード存在下における抗生物質耐性進化の低自由度表現2020

    • Author(s)
      佐藤匠哉, 金子邦彦
    • Organizer
      第75回 日本物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 発現エラーの大きな遺伝子から機能的な発現制御ネットワークをつくる方法2020

    • Author(s)
      井上雅世, 金子邦彦
    • Organizer
      第75回 日本物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ホスト-パラサイト相互作用における成長と耐性のトレードオフ2020

    • Author(s)
      西浦直人, 金子邦彦
    • Organizer
      第75回 日本物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] High-dimensional data acquisition for analysis of microbial evolution and ecology2020

    • Author(s)
      Chikara Furusawa
    • Organizer
      The 29th Hot Spring Harbor International Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 実験室進化手法を応用した大腸菌のストレス耐性機構の解明とその制御2020

    • Author(s)
      古澤力
    • Organizer
      日本農芸化学会大会2020
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Dimension reduction in phenotypic space through adaptive evolution2019

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      UBI-Nano LSI Workshop
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Homeorhesis Revisited2019

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      2nd Joint Symposium between Mechanobiology Institute and Universal Biology Institute
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transition in relaxation paths in allosteric molecules: enzymatic kinetically constrained model2019

    • Author(s)
      Tetsuhiro Hatakeyama
    • Organizer
      Statistical Physics of Complex Systems
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞の成長と休眠への理論的アプローチ2019

    • Author(s)
      金子邦彦
    • Organizer
      低温生物工学会大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Dimension-Reduction Theory for Direction and Constraint in Phenotypic Evolution2019

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      From Molecular Basis to Predictability and Control of Evolution
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transition in relaxation paths in allosteric molecules: enzymatic kinetically constrained model2019

    • Author(s)
      Tetsuhiro S. Hatakeyama, Kunihiko Kaneko
    • Organizer
      STAPHYS
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Microeconomics of Metabolism: Overflow metabolism as Giffen behavior2019

    • Author(s)
      Jumpei Yamagishi
    • Organizer
      Advances in Complex Systems - From Ecology to Economics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 境界が動く反応拡散系のパターンの波長収縮2019

    • Author(s)
      長谷川将, 金子邦彦
    • Organizer
      日本物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] エピジェネティック制御と遺伝子制御ダイナミクス;Waddington 地形の実現2019

    • Author(s)
      松下優貴, 金子邦彦
    • Organizer
      日本物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 資源供給を伴う分子・細胞集団の多様性2019

    • Author(s)
      上村淳
    • Organizer
      日本物理学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Functional Sensitivity and Mutational Robustness of Proteins2019

    • Author(s)
      Qianyuan Tang, Tetsuhiro Hatakeyama, Kunihiko Kaneko
    • Organizer
      第57回 日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Cooperative architecture for functional network from sloppy gene expression dynamics2019

    • Author(s)
      Masayo Inoue, Kunihiko Kaneko
    • Organizer
      第57回 日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Analysis of Evolutionary Constraints and Plasticity by Microbial Laboratory Evolution and Computational Models2019

    • Author(s)
      Chikara Furusawa
    • Organizer
      From Molecular Basis to Predictability and Control of Evolution
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 自動化システムを用いた大腸菌進化実験:進化の予測と制御へ向けて2019

    • Author(s)
      古澤力
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Analysis of Phenotypic Constraints and Plasticity by Microbial Laboratory Evolution2019

    • Author(s)
      古澤力
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Analysis of Evolutionary Constraints and Plasticity by Microbial Laboratory Evolution and Computational Models2019

    • Author(s)
      Chikara Furusawa
    • Organizer
      2nd Joint Symposium between Mechanobiology Institute and Universal Biology Institute
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生物システムの安定性と可塑性の理解へ向けて:実験室進化と理論解析2019

    • Author(s)
      古澤力
    • Organizer
      CBI学会2019年大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Analysis of Phenotypic Constraints and Plasticity by Microbial Laboratory Evolution2019

    • Author(s)
      Chikara Furusawa
    • Organizer
      The 20th International Conference on Systems Biology
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] High-dimensional data acquisition for analysis of microbial evolution and ecology2019

    • Author(s)
      Chikara Furusawa
    • Organizer
      The 1st Symposium of China-Japan Joint Laboratory for Natural Products and Chemical Biology--Trends in Gut Microbiome Research
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution2019

    • Author(s)
      古澤力
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Bacterial growth curves are predictable from cellular Raman spectra2019

    • Author(s)
      Kamei, K. F., Kobayashi-Kirschvink, K. J., Wakamoto, Y.
    • Organizer
      American Physical Society March Meeting 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞ラマンスペクトルを用いたトランスクリプトームの非破壊測定2019

    • Author(s)
      若本祐一
    • Organizer
      形態解析ワークショップー多様な顕微鏡を用いて
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 細胞ラマンスペクトルを用いたトランスクリプトームの非破壊測定2019

    • Author(s)
      若本祐一
    • Organizer
      農芸化学会2019年度大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Non-destructive prediction of transcriptomic profiles by Raman microscopy2019

    • Author(s)
      Kobayashi-Kirschvink, K. J., Kamei, K. F., Nakaoka, H., Wakamoto, Y.
    • Organizer
      American Physical Society March Meeting 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Non-destructive prediction of transcriptomic profiles by Raman microscopy2019

    • Author(s)
      Kobayashi-Kirschvink, K. J., Kamei, K. F., Nakaoka, H., Wakamoto, Y.
    • Organizer
      Gordon Research Conference 2019
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細菌の薬剤耐性進化における変異率と進化速度の関係2019

    • Author(s)
      芝井厚, 井筒弥那子, 古澤力
    • Organizer
      第13回日本ゲノム微生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 全自動培養システムを用いた多種ストレス環境下における大腸菌の大規模実験室進化2019

    • Author(s)
      前田智也、岩澤諄一郎、堀之内貴明、阪田奈津枝、川田正子、小谷葉月、酒井亜希、田邊久美、古澤力
    • Organizer
      第13回日本ゲノム微生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] High-throughput Laboratory Evolution of E. coli to Unveil Phenotypic Plasticity and Constraint2019

    • Author(s)
      Chikara Furusawa, Takaaki Horinouchi, Tomoya Maeda
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 触媒反応増殖系における水平伝播効果2019

    • Author(s)
      上村淳, 金子邦彦
    • Organizer
      日本物理学会 第74回年次大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] エピジェネティック制御を含んだ遺伝子ダイナミクス:多重状態の生成と安定化2019

    • Author(s)
      松下優貴, 金子邦彦
    • Organizer
      日本物理学会 第74回年次大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 相克的階層進化におけるスケーリング則2019

    • Author(s)
      竹内信人, 御手洗菜美子, 金子邦彦
    • Organizer
      日本物理学会 第74回年次大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 遺伝子制御ネットワークの進化と低次元構造2019

    • Author(s)
      佐藤匠哉, 金子邦彦
    • Organizer
      日本物理学会 第74回年次大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] スピングラス模型における固有モードの進化2019

    • Author(s)
      坂田綾香, 金子邦彦
    • Organizer
      日本物理学会 第74回年次大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Multilevel Consistency, Dimension Reduction, and Slow Dynamics in Biology2019

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Evolving life: the evolution with tradeoffs, frustration in selection and growing complexity
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細菌パーシスタンスにおける生存モードの多様性2018

    • Author(s)
      若本祐一
    • Organizer
      第41回分子生物学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] パーシスタンス現象の1細胞解析2018

    • Author(s)
      若本祐一
    • Organizer
      第3回抗酸菌研究会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 特殊な細胞ヒストリーをとらえる1細胞計測技術2018

    • Author(s)
      若本祐一
    • Organizer
      第32回さんわかセミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Long-term nongenetic adaptation of antibiotic-stressed Escherichia coli2018

    • Author(s)
      Umetani, M., Fujisawa, M., Furusawa, C., Wakamoto, Y.
    • Organizer
      19th International Conference on Systems Biology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Non-genetic adaptation of antibiotic-stressed Escherichia coli2018

    • Author(s)
      Umetani, M., Hashimoto, M., Fujisawa, M., Furusawa, C., Wakamoto, Y.
    • Organizer
      第18回東京大学生命科学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] The Linearity between Transcriptomes and Cellular Raman Spectra2018

    • Author(s)
      Kamei, K. F., Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Ohta, K., Wakamoto, Y.
    • Organizer
      第18回東京大学生命科学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Is There A Correspondence between Cellular Macroscopic Quantities and Raman Spectra?2018

    • Author(s)
      Kamei, K. F., Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Ohta, K., Wakamoto, Y.
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] High-throughput Laboratory Evolution of E. coli to Unveil Phenotypic Plasticity and Constraint2018

    • Author(s)
      Chikara Furusawa
    • Organizer
      1st Asia Evo.
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] High-throughput laboratory evolution of E. coli: toward understanding of phenotypic plasticity and constraint2018

    • Author(s)
      Chikara Furusawa
    • Organizer
      Euro EvoDevo2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] High-throughput Laboratory Evolution of E. coli to Unveil Phenotypic Plasticity and Constraint2018

    • Author(s)
      Chikara Furusawa
    • Organizer
      46th Naito Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 表現型進化はどのように拘束されているか:進化実験を用いた定量解析2018

    • Author(s)
      古澤力
    • Organizer
      進化学会第20会大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 生物システムの記述と制御に向けて:大腸菌進化実験と理論解析2018

    • Author(s)
      古澤力
    • Organizer
      第15回 生物数学の理論とその応用 -次世代の数理科学への展開-
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 生物の状態変化をどのように記述すべきか:実験室進化と理論解析2018

    • Author(s)
      古澤力
    • Organizer
      第6回MACSコロキウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 細胞状態の記述・予測・制御へ向けて:構成的実験と理論解析2018

    • Author(s)
      古澤力
    • Organizer
      JST-CRDS 多次元生命システム研究開発戦略 科学技術未来ワークショップ
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 高変異率条件における細菌の長期実験進化2018

    • Author(s)
      芝井厚, 堀之内貴明, 古澤力, 津留三良
    • Organizer
      日本進化学会第20回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 大規模実験室進化を用いた転写因子の破壊による大腸菌の薬剤耐性化の制御2018

    • Author(s)
      堀之内貴明, 前田智也 小谷葉月, 酒井亜希, 古澤力
    • Organizer
      日本生物工学会第70回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 全自動培養システムを用いた多種ストレス環境下における大腸菌の大規模実験室進化2018

    • Author(s)
      前田智也、堀之内貴明、阪田奈津枝、川田正子、小谷葉月、酒井亜希、田邊久美、古澤力
    • Organizer
      生命科学系フロンティアミーティング2018
    • Related Report
      2018 Annual Research Report
  • [Presentation] 細菌の抗生物質耐性進化における最適変異率モデルと実験検証2018

    • Author(s)
      芝井厚, 井筒弥那子, 古澤力
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Phenotypic evolvability2018

    • Author(s)
      Kuhihiko Kaneko
    • Organizer
      1st AsiaEvo Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Is a macroscopic description of biological systems possible?2018

    • Author(s)
      Kuhihiko Kaneko
    • Organizer
      Physics of Living Matter
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Reproduction of a Set of Diverse Molecules, Minority Control, and Arrival of Evolvability2018

    • Author(s)
      金子邦彦
    • Organizer
      Workshop "Puzzles and Solutions in Astrobiology"
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The origin of the central dogma of molecularbiology throughconflicting multilevel evolution2018

    • Author(s)
      Nobuto Takeuchi
    • Organizer
      Science of Early Life
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Phenotypic robustness, fluctuations and plasticity2018

    • Author(s)
      Kuhihiko Kaneko
    • Organizer
      7th Euro Evo Devo
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The origin of the central dogma through conflicting multilevel evolution2018

    • Author(s)
      Nobuto Takeuchi
    • Organizer
      Evolution - Genetic Novelty/Genomic Variations by RNA Networks and Viruses
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Complex-Systems Approach to an Ecosystem of Interacting Cells: Differentiation, Symbiosis, and Diversification2018

    • Author(s)
      Kuhihiko Kaneko
    • Organizer
      Research meeting: Principles of Microbial Ecosystems 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Epigenetic Spin Glass II:アトラクタの刈り込みのメカニズム2018

    • Author(s)
      松下優貴, 金子邦彦
    • Organizer
      日本物理学会 2018年秋季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] フラグメント化された自己触媒系のコンパートメント化2018

    • Author(s)
      上村淳, 竹内信人, 松原嘉哉, 金子邦彦
    • Organizer
      日本物理学会 2018年秋季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 多環境下における触媒反応ネットワーク進化による次元削減2018

    • Author(s)
      佐藤匠哉, 金子邦彦
    • Organizer
      日本物理学会 2018年秋季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ホストパラサイト共進化系における遺伝子型-表現型対応の進化2018

    • Author(s)
      西浦直人, 金子邦彦
    • Organizer
      日本物理学会 2018年秋季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 不正確な素子から正確な情報伝達をおこなうためのネットワーク構造と協同性2018

    • Author(s)
      井上雅世, 金子邦彦
    • Organizer
      日本物理学会 2018年秋季大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 細胞分化への現象論的アプローチ:エピジェティクスによる安定細胞タイプの形成2018

    • Author(s)
      松下優貴, 金子邦彦
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 対称性の自発的破れにより生起する分子生物学のセントラルドグマ2018

    • Author(s)
      竹内信人, 金子邦彦
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Multilevel consistency, dimension reduction, and slow dynamics in biology2018

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      2018 Quantitative Life Science Workshop
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dimension Reduction and Relevance of Slow Modes in Biological Dynamical Systems102018

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Dynamics Days Asia Pacific
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Emergence of low-dimensional structure in high-dimensional cell model and convergent evolution in phenotypic space2018

    • Author(s)
      Takuya Sato
    • Organizer
      APEF 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Non-destructive prediction of transcriptomes from single-cell Raman spectra2018

    • Author(s)
      Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Kamei, K. F., Nosho, K., Fukushima, H., Kanesaki, Y., Yajima, S., Masaki, H., Ohta, K., Wakamoto, Y.
    • Organizer
      The 62nd Annual Meeting of the Biophysical Socieity
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Linking transcriptomes and single-cell Raman spectra: Towards in-vivo omics analysis2018

    • Author(s)
      Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Kamei, K. F., Nosho, K., Fukushima, H., Kanesaki, Y., Yajima, S., Masaki, H., Ohta, K., Wakamoto, Y.
    • Organizer
      Winter Q-Bio 2018
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Non-genetic adaptation of antibiotic-stressed Escherichia coli2018

    • Author(s)
      Umetani, M., Hashimoto, M., Fujisawa, M., Furusawa, C., Wakamoto, Y.
    • Organizer
      Winter q-bio 2018
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 大腸菌のストレス適応から見た遺伝子型に依らない表現型の変化2018

    • Author(s)
      梅谷実樹、若本祐一
    • Organizer
      応用物理学会 有機分子・バイオエレクトロニクス分科会3月研究会 生命システムに学ぶセンシングおよび情報処理
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Phenotypic diversity and constraints in microbial adaptive evolution2018

    • Author(s)
      Chikara Furusawa
    • Organizer
      Les Houches School“Evolution of Diversity
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 大腸菌進化実験を用いた進化的拘束の解析2018

    • Author(s)
      古澤力
    • Organizer
      生命の起源および進化学会第43回学術講演会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Universality in Phenotypic Adaptation and Evolution: Fluctuationresponse, Genetic Assimilation, and Dimension Reduction2018

    • Author(s)
      金子邦彦
    • Organizer
      Non-equilibrium dynamics and information processing in biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Reproduction of protocells follows trade-off between growth and survival2018

    • Author(s)
      Atsushi Kamimura
    • Organizer
      Optimization and Trade-offs in Cell Growth and Survival
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Theory for Transitions Between Exponential and Stationary Phases: Universal Laws for Lag Time2018

    • Author(s)
      Yusuke Himeoka
    • Organizer
      Optimization and Trade-offs in Cell Growth and Survival
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Macroscopic Theory of Phenotypic Adaptation and Evolution: Fluctuation-Response, Genetic Assimilation, and Dimension Reduction2018

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Evolution of Diversity
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A quantitative law of homeostasis in the gene regulatory network through the evolutionary process2018

    • Author(s)
      Tetsuhiro Hatakeyama
    • Organizer
      Evolution of Diversity
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Conditions for selecting complex sequences in self-replicating template polymer system2018

    • Author(s)
      Yoshiya Matsubara
    • Organizer
      Evolution of Diversity
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Promotion of cellular growth by leakage of chemical components and its impact on symbiosis2018

    • Author(s)
      Jumpei Yamagishi
    • Organizer
      Evolution of Diversity
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 対称性の自発的破れによって生起する分子生物学の基本原理:セントラル・ドグマはもはやドグマではない2018

    • Author(s)
      竹内信人, 金子邦彦
    • Organizer
      物理学会 第73回年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] フラグメント化された自己触媒系の安定した増殖2018

    • Author(s)
      上村淳, 竹内信人, 松原嘉哉, 金子邦彦
    • Organizer
      物理学会 第73回年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 鋳型複製高分子系における機能分化2018

    • Author(s)
      松原嘉哉, 金子邦彦
    • Organizer
      物理学会 第73回年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 自己強化によるアトラクターの生成と刈り込み:エピジェネティクスによる安定細胞タイプの形成2018

    • Author(s)
      松下優貴, 金子邦彦
    • Organizer
      物理学会 第73回年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Growth, Death, and Aging in Fission yeast2017

    • Author(s)
      Nakaoka, H., Wakamoto, Y.
    • Organizer
      The 9th international Fission Yeast Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Heterogeneous response and adaptation of antibiotic-stressed clonal population of bacteria2017

    • Author(s)
      Umetani, M., Wakamoto, Y.
    • Organizer
      9th International Conference on Molecular Electronics and Bioelectronics
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The Correspondence Between Single-Cell Raman Spectra and Transcriptomes2017

    • Author(s)
      Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Ohta, K., Wakamoto, Y.
    • Organizer
      Single-Cell Biophysics: Measurement, Modulation, and Modeling
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 非ストレス環境における成長と死のトレードオフ関係2017

    • Author(s)
      中岡秀憲、若本祐一
    • Organizer
      第50回酵母遺伝学フォーラム研究報告会
    • Related Report
      2017 Annual Research Report
  • [Presentation] マイクロ流体デバイスを用いて分裂酵母の成長と死の動態を計測する2017

    • Author(s)
      中岡秀憲、若本祐一
    • Organizer
      第913回酵母細胞研究会例会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 実験室進化・オミックス解析・破壊株スクリーニングに基づく表現型メモリー機構の理解への試み2017

    • Author(s)
      堀之内貴明, 前田智也, 古澤力
    • Organizer
      生命情報科学若手の会第9回研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 実験室進化により得られたメチルグリオキサール耐性大腸菌のマルチオミクス解析2017

    • Author(s)
      堀之内貴明, 徳山健斗, 前田智也, 松田史生, 清水浩, 古澤力
    • Organizer
      第11 回メタボロームシンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 全自動培養システムを用いた多種ストレス環境化における大腸菌進化ダイナミクスの解析2017

    • Author(s)
      前田智也, 堀之内貴明, 阪田奈津枝, 小谷葉月, 酒井亜希, 田邊久美, 古澤力
    • Organizer
      第16回微生物研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 全自動培養システムを用いた多種ストレス環境下における大腸菌の大規模実験室進化2017

    • Author(s)
      前田智也, 堀之内貴明, 阪田奈津枝, 小谷葉月, 酒井亜希, 田邊久美, 古澤力
    • Organizer
      第12回日本ゲノム微生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 大腸菌実験室進化とオミックス解析を用いて大腸菌の適応進化過程を解析する2017

    • Author(s)
      堀之内貴明, 前田智也, 古澤力
    • Organizer
      第五回NGS現場の会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 大規模実験室進化とオミックス解析による大腸菌のストレス耐性機構の解析2017

    • Author(s)
      堀之内貴明, 前田智也, 古澤力
    • Organizer
      第69回生物工学会大会シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 大腸菌の人工進化実験における表現型・遺伝子型の網羅的解析2017

    • Author(s)
      古澤力
    • Organizer
      第16回微生物研究会-微生物の多様な生き様にせまる
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Phenotypic Constraints Shaped by Evolution: Numerical and Experimental Approaches2017

    • Author(s)
      Chikara Furusawa, Kunihiko Kaneko, Takaaki Horinouchi, Tomoya Maeda
    • Organizer
      生物物理学会第55回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Macroscopic Theory of Phenotypic Adaptation and Evolution: Fluctuation-response, Genetic Assimilation, and Deep Linearity2017

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      117th Statistical Mechanics Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] From a set of catalytic reactions to reproduction of cells: Perspective from Universal Biology2017

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      The Origin of Life Workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transition to Diversification by Limitation and Competition for Multiple Resources in Catalytic Reaction Networks2017

    • Author(s)
      Kamimura A., Kaneko K.
    • Organizer
      18th International Conference on the Origin of Life
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Dynamical-Systems Perspective to Stem-cell Biology:Relevance of oscillatory gene expression dynamics and cell-cell interaction2017

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Physical Consepts in Stem Cell Biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Universality in Biology?: (I) Consistency Principle for Complex Systems-Biology (II) Robustness, Plasticity in Adaptation and Evolution2017

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      EON Workshop on Universal Biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transitions among Log, Dormant, and Death Phases: Proposition of a simple model and quantitative characterization of dormancy and lag time2017

    • Author(s)
      姫岡優介, 金子邦彦
    • Organizer
      第55回 日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Conditions for selecting complex sequences in mathematical model of self-replicating template polymer system2017

    • Author(s)
      松原嘉哉, 金子邦彦
    • Organizer
      第55回 日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 進化による低次元主要モード形成2017

    • Author(s)
      金子邦彦, 古澤力
    • Organizer
      日本物理学会2017年秋季大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 進化ゆらぎ応答関係の固有モード解析2017

    • Author(s)
      佐藤匠哉, 金子邦彦
    • Organizer
      日本物理学会2017年秋季大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 触媒増殖系における触媒活性と成長速度の関係2017

    • Author(s)
      上村淳, 金子邦彦
    • Organizer
      日本物理学会2017年秋季大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 遅い変数と発生の進化可能性2017

    • Author(s)
      香曽我部隆裕, 金子邦彦
    • Organizer
      日本物理学会2017年秋季大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ネットワークのデザイン原理と構成要素の応答性2017

    • Author(s)
      井上雅世, 金子邦彦
    • Organizer
      日本物理学会2017年秋季大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 構成的・複雑系・普遍性:「生命とは何か」をめぐって2017

    • Author(s)
      金子邦彦
    • Organizer
      「細胞を創る」研究会10.0
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 適応、記憶、分化、進化の普遍生物学:大自由度力学系との視点から2017

    • Author(s)
      金子邦彦
    • Organizer
      第4回 非線形現象の捉え方
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Theory for Transitions Between Exponential and Stationary Phases: Universal Laws for Lag Time2017

    • Author(s)
      Yusuke Himeoka
    • Organizer
      EMBO Conference: Quantitative Principles in Biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Reciprocity between Robustness and Plasticity as a Universal Quantitative Principle in Biology2017

    • Author(s)
      Tetsuhiro Hatakeyama
    • Organizer
      EMBO Conference: Quantitative Principles in Biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Universality in Biology? Fluctuation-response relationship and Deep Linearity in Adaptation and Evolution2017

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      ENS-UTokyo symposium
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Deep Linearity in Adaptation and Evolution: Macroscopic Theory, Microscopic Simulation, and Bacterial Experiments2017

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Q-bio Workshop: Physical approaches for growing & evolving populations
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Toward Understanding of Adaptive Evolution: Theoretical Analysis and Microbial Laboratory Evolution.2017

    • Author(s)
      Chikara Furusawa
    • Organizer
      5th International Symposium of the Mathematics on Chromatin Live Dynamics
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生物システムの可塑性と安定性の理解へ向けて:実験室進化と理論解析によるアプローチ2017

    • Author(s)
      Chikara Furusawa
    • Organizer
      Workshop on recent development of statistical physics
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Unique single-cell histories that adapt to antibiotic stress2017

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      第90回細菌学会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Constraints and limits in the growth of microbial cells2017

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      International Workshop: Physical Approaches for Growing and Evolving Population
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Multi-level Evolution under Resource Limitation2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      生命動態システム科学四拠点・CREST・PRESTO・QBiC 合同シンポジウム「生命動態の分子メカニズムと数理」
    • Place of Presentation
      シェラトンホテル広島
    • Year and Date
      2016-03-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] 生物時計における周期の頑健性と位相の可塑性の互恵的関係2016

    • Author(s)
      畠山哲央
    • Organizer
      生命動態システム科学四拠点・CREST・PRESTO・QBiC 合同シンポジウム「生命動態の分子メカニズムと数理」
    • Place of Presentation
      シェラトンホテル広島
    • Year and Date
      2016-03-25
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] バクテリアの適応ダイナミクスの1細胞解析2016

    • Author(s)
      若本祐一
    • Organizer
      生命動態システム科学四拠点・CREST・PRESTO・QBiC合同シンポジウム「生命動態の分子メカニズムと数理」
    • Place of Presentation
      シェラトンホテル広島(広島県広島市)
    • Year and Date
      2016-03-25
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Pirt方程式成立条件の探索2016

    • Author(s)
      姫岡優介
    • Organizer
      第71回 日本物理学会
    • Place of Presentation
      東北学院大学(宮城県仙台市)
    • Year and Date
      2016-03-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] 鋳型複製する高分子系における配列情報の選択2016

    • Author(s)
      松原嘉哉
    • Organizer
      第71回 日本物理学会
    • Place of Presentation
      東北学院大学(宮城県仙台市)
    • Year and Date
      2016-03-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] The origin of genes through spontaneous symmetry breaking2016

    • Author(s)
      竹内信人
    • Organizer
      第71回 日本物理学会
    • Place of Presentation
      東北学院大学(宮城県仙台市)
    • Year and Date
      2016-03-20
    • Related Report
      2015 Annual Research Report
  • [Presentation] 発生で遅く変化する変数と進化可能性2016

    • Author(s)
      香曽我部隆裕
    • Organizer
      第71回 日本物理学会
    • Place of Presentation
      東北学院大学(宮城県仙台市)
    • Year and Date
      2016-03-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] 階層ゲームにおける階層的囚人のジレンマ2016

    • Author(s)
      藤本悠雅
    • Organizer
      第71回 日本物理学会
    • Place of Presentation
      東北学院大学(宮城県仙台市)
    • Year and Date
      2016-03-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] Optimal system size for emergence of self-replicating polymer system2016

    • Author(s)
      Yoshiya J. Matsubara
    • Organizer
      winter q-bio
    • Place of Presentation
      Sheraton Waikiki(ハワイ、米国)
    • Year and Date
      2016-02-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Sequence selection in mathematical model of template replicating polymer system2016

    • Author(s)
      Yoshiya J. Matsubara
    • Organizer
      Origins of Life (Gordon research seminar)
    • Place of Presentation
      Hotel Galvez(ガルベストン、米国)
    • Year and Date
      2016-01-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Fitness and gene expression from the viewpoint of single-cell lineages2016

    • Author(s)
      Wakamoto, Y.
    • Organizer
      QBio NIG International Symposium
    • Place of Presentation
      東京大学生産技術研究所(東京都目黒区)
    • Year and Date
      2016-01-11
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Macroscopic Theory of Phenotypic Adaptation and Evolution: Fluctuation-response, Genetic Assimilation, and Slow-Manifold Hypothesis2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Dynamics Days Asia-Pacific
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Macroscopic Theory of Phenotypic Adaptation and Evolution: Fluctuation-response, Genetic Assimilation, and Slow-Manifold Hypothesis2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      APCTP-ICTP Joint Workshop: Quantitative Life Sciences
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Macroscopic Theory of Phenotypic Adaptation and Evolution: Fluctuation-response, Genetic Assimilation, and Slow-Manifold Hypothesis2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      第54回日本生物物理学会年会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Macroscopic Theory of Phenotypic Adaptation and Evolution: Fluctuation-response, Genetic Assimilation and Deep Linearity2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Universal Biology Symposium
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] In search for macroscopic description of cellular states2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Interdisciplinary Applications of Nonlinear Science
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Taming high-dimensional dynamical systems2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Multistability and Tipping: From Mathematics and Physics to Climate and Brain
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Consistency between molecular and cellular levels: From a set of catalytic reactions to reproduction of cells2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      History and Philosophy of Origins Research Workshop
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 表現型進化の方向性:揺らぎ-応答-安定性理論2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      日本進化学会第18 回大会シンポジウム「進化可能性と方向性:実験と理論からのアプローチ」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Macroscopic theory of phenotypic adaptation and evolution: fluctuationresponse, genetic assimilation, and slow-manifold hypothesis2016

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Quantative Laws II
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞の可塑性とロバストネスの状態論2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      第54回日本生物物理学会年会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Analysis of evolutionary constraints and plasticity by laboratory evolution and computational models.2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      Genome Evolution Conference
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Toward Understanding of Adaptive Evolution: High-throughput Laboratory Evolution and Computational Analysis2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      International Symposium on Universal Biology.
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Toward Understanding of Biological Plasticity: Computational Analysis and Experimental Evolution2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      QBiC Symposium 2016
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 大腸菌進化実験による進化可能性の構成的理解に向けて2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      日本進化学会第18 回大会シンポジウム「進化可能性と方向性:実験と理論からのアプローチ」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 生き物はどこまで変われるのか:進化実験と理論解析-2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      研究会「物理学的普遍性から生物学的普遍性へ」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Prediction of Stress Resistance by Gene Expression Proles2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      Metabolic Engineering XI
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analyses of aging dynamics using mathematical models2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      Kickoff-Workshop of Aging Project
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 細胞シミュレーションと大腸菌進化実験を用いた適応進化ダイナミクスの解析2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      第三回数理デザイン道場
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 適応進化ダイナミクスの解明~微生物実験と理論解析~2016

    • Author(s)
      Chikara Furusawa
    • Organizer
      東京大学物理学専攻A7サブコース第三回シンポジウム「生物物理の新展開」
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Single-cell dynamics leading to drug resistance acquisition2016

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      UBI International Symposium
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Acquisition of drug resistance at the single-cell level2016

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      BSJ2016
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] ストレス環境に対する適応・順応を担う特殊細胞系列の解析2016

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      「細胞を創る」研究会9.0
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 1細胞ヒストリーと系統樹の計測・解析技術2016

    • Author(s)
      Yuichi Wakamoto
    • Organizer
      日本顕微鏡学会第59回シンポジウム
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] The Growth/Death transition in self-replicating polymer system2015

    • Author(s)
      Yusuke Himeoka
    • Organizer
      Winter School on Quantitative Systems Biology 2015
    • Place of Presentation
      International Centre for Theoretical Sciences (バンガロール、インド)
    • Year and Date
      2015-12-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 生物システムの安定性と可塑性: 理論と実験からのアプローチ2015

    • Author(s)
      古澤力
    • Organizer
      第34回 BMIRC研究会
    • Place of Presentation
      九州工業大学 飯塚キャンパス
    • Year and Date
      2015-12-10
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Diversification by resource limitations in a catalytic reaction network2015

    • Author(s)
      上村淳
    • Organizer
      生命ダイナミクスの数理とその応用:理論からのさらなる深化
    • Place of Presentation
      東京大学大学院数理科学研究科(東京)
    • Year and Date
      2015-12-09
    • Related Report
      2015 Annual Research Report
  • [Presentation] Origin of genes through spontaneous symmetry breaking2015

    • Author(s)
      竹内信人
    • Organizer
      生命ダイナミクスの数理とその応用:理論からのさらなる深化
    • Place of Presentation
      東京大学大学院数理科学研究科(東京)
    • Year and Date
      2015-12-09
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Evolution-Development Congruence in Pattern Formation Dynamics: Bifurcations in Gene Expression and Regulation of Networks Structures2015

    • Author(s)
      Takahiro Kohsokabe
    • Organizer
      生命ダイナミクスの数理とその応用:理論からのさらなる深化
    • Place of Presentation
      東京大学大学院数理科学研究科(東京)
    • Year and Date
      2015-12-09
    • Related Report
      2015 Annual Research Report
  • [Presentation] Multi-level Evolutionary Dynamics2015

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Winter School on Quantitative Systems Biology 2015
    • Place of Presentation
      International Centre for Theoretical Sciences (バンガロール、インド)
    • Year and Date
      2015-12-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Fluctuation and Response of Gene Expressions through Adaptation and Evolution2015

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Bacterial Expressions II
    • Place of Presentation
      The National Centre for Biological Sciences(バンガロール、インド)
    • Year and Date
      2015-12-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 大腸菌進化実験と 細胞シミュレーションを用いた 適応進化ダイナミクスの解析2015

    • Author(s)
      古澤力
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 全自動実験室進化システムを用いた多系列・多種ストレス環境の実験室進化による大腸菌のストレス適応戦略の解析2015

    • Author(s)
      堀之内貴明
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
  • [Presentation] The Growth/Death transition in self-replicating polymer system2015

    • Author(s)
      Yusuke Himeoka
    • Organizer
      Bacterial Expressions II
    • Place of Presentation
      The National Centre for Biological Sciences(バンガロール、インド)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞の増殖と死に見られる定量法則2015

    • Author(s)
      若本祐一
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Toward Understanding of Adaptive Evolution:Computational Analysis and Experimental Evolution2015

    • Author(s)
      古澤力
    • Organizer
      平成27年度生命システム理論研究会
    • Place of Presentation
      東京医科歯科大学
    • Year and Date
      2015-11-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] The origin of genes by spontaneous symmetry breaking2015

    • Author(s)
      Nobuto Takeuchi
    • Organizer
      The Computational Biology Branch Seminar
    • Place of Presentation
      National Center for Biotechnology Information (Bethesda MD; USA)
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生物システムの安定性と可塑性:大腸菌進化実験によるアプローチ2015

    • Author(s)
      古澤力
    • Organizer
      山田研究会「生物と非生物をつなぐ」
    • Place of Presentation
      ラフォーレ修善寺
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] The origin of genes by spontaneous symmetry breaking2015

    • Author(s)
      Nobuto Takeuchi
    • Organizer
      Re-conceptualizing the Origin of Life: Experimental; Interdisciplinary; and Computational Windows on the Core Concepts;
    • Place of Presentation
      Carnegie Institution for Science (Washington DC, USA)
    • Year and Date
      2015-11-09
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 大腸菌の進化実験を用いた進化ダイナミクスの解析とその応用2015

    • Author(s)
      古澤力
    • Organizer
      第67回日本生物工学大会
    • Place of Presentation
      城山観光ホテル
    • Year and Date
      2015-10-28
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 全自動実験室進化による様々な化合物ストレスに対する耐性大腸菌の創生と耐性化機構の解析2015

    • Author(s)
      堀之内貴明
    • Organizer
      第67回日本生物工学大会
    • Place of Presentation
      城山観光ホテル
    • Year and Date
      2015-10-26
    • Related Report
      2015 Annual Research Report
  • [Presentation] ハイスループット実験室進化とオミックス解析による大腸菌の適応進化の解析2015

    • Author(s)
      堀之内貴明
    • Organizer
      生命情報科学若手の会第7回研究会
    • Place of Presentation
      慶應義塾大学鶴岡タウンキャンパス
    • Year and Date
      2015-10-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 触媒反応ネットワークにおける相補的細胞分化と集団成長2015

    • Author(s)
      山岸純平
    • Organizer
      日本物理学会 2015年秋季大会
    • Place of Presentation
      関西大学(大阪府吹田市)
    • Year and Date
      2015-09-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 触媒反応系における増殖速度と多様化のトレードオフ2015

    • Author(s)
      上村淳
    • Organizer
      日本物理学会 2015年秋季大会
    • Place of Presentation
      関西大学(大阪府吹田市)
    • Year and Date
      2015-09-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 触媒反応ネットワークにおける動的記憶の形成2015

    • Author(s)
      畠山哲央
    • Organizer
      日本物理学会 2015年秋季大会
    • Place of Presentation
      関西大学(大阪府吹田市)
    • Year and Date
      2015-09-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 代謝の切り替えが収率に与える影響2015

    • Author(s)
      姫岡優介
    • Organizer
      日本物理学会 2015年秋季大会
    • Place of Presentation
      関西大学(大阪府吹田市)
    • Year and Date
      2015-09-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] 固定端境界条件の効果による周期空間パターン2015

    • Author(s)
      香曽我部隆裕
    • Organizer
      日本物理学会 2015年秋季大会
    • Place of Presentation
      関西大学(大阪府吹田市)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 簡単な細胞モデルを用いた Pirt 方程式の導出:Derivation of the Pirt equation in the simple cellular model2015

    • Author(s)
      姫岡優介
    • Organizer
      第53回 日本生物物理学会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] 進化と適応における揺らぎ、応答の普遍関係:Fluctuation and Response in Adaptation and Evolution-Universal Relationship2015

    • Author(s)
      金子邦彦
    • Organizer
      第53回 日本生物物理学会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ネットワーク構造のデザイン原理と構成要素の応答性:Network Design Principles and Response Sensitivity of Components2015

    • Author(s)
      井上雅世
    • Organizer
      第53回 日本生物物理学会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] 触媒反応ネットワークにおける資源不足と多様化:Diversification by limitation of multiple resources in a catalytic reaction network2015

    • Author(s)
      上村淳
    • Organizer
      第53回 日本生物物理学会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] 大自由度ダイナミクスから”生きている状態”の記述へ2015

    • Author(s)
      古澤力
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Evolution-Development Congruence in Pattern Formation Dynamics: Bifurcations in Gene Expression and Regulation of Networks Structures2015

    • Author(s)
      Takahiro Kohsokabe
    • Organizer
      High-Dimensional data for the design principles of life
    • Place of Presentation
      QBiC(大阪府吹田市)
    • Year and Date
      2015-08-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Derivation of the Pirt equation in the simple cellular model2015

    • Author(s)
      Yusuke Himeoka
    • Organizer
      High-Dimensional data for the design principles of life
    • Place of Presentation
      QBiC(大阪府吹田市)
    • Year and Date
      2015-08-26
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Diversification under limited resources in catalytic reaction networks2015

    • Author(s)
      AtsushiK Kamimura
    • Organizer
      High-Dimensional data for the design principles of life
    • Place of Presentation
      QBiC(大阪府吹田市)
    • Year and Date
      2015-08-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Complementary Cell Differentiation and Collective Growth in Catalytic Reaction Networks2015

    • Author(s)
      Jumpei Yamagishi
    • Organizer
      High-Dimensional data for the design principles of life
    • Place of Presentation
      QBiC(大阪府吹田市)
    • Year and Date
      2015-08-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A physicist's Look at Biological Robustness and Plasticity: Relationship between Fluctuation and Response through Adaptation and Evolution2015

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      High-Dimensional data for the design principles of life
    • Place of Presentation
      QBiC(大阪府吹田市)
    • Year and Date
      2015-08-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Toward Understanding of Adaptive Evolution: Computational Analysis and Experimental Evolution2015

    • Author(s)
      Chikara Furusawa
    • Organizer
      QBiC Symposium: High-dimensional data for the design principles of life
    • Place of Presentation
      理化学研究所 大阪キャンパス
    • Year and Date
      2015-08-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Growth and adaptation at the single-cell level2015

    • Author(s)
      Wakamoto, Y.
    • Organizer
      QBiC Symposium 2015: High-Dimensional Data for the Design Principles of Life
    • Place of Presentation
      理化学研究所生命システム研究センター(大阪府吹田市)
    • Year and Date
      2015-08-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Reciprocity between robustness of period and plasticity of phase2015

    • Author(s)
      Tetsuhiro Hatakeyama
    • Organizer
      Workshop & Summer School on "Models of Life"
    • Place of Presentation
      Krogerup hojskole(デンマーク)
    • Year and Date
      2015-08-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Theory of Biological Robustness and Plasticity:Fluctuation and Response in Adaptation and Evolution2015

    • Author(s)
      Kunihiko Kaneko
    • Organizer
      Workshop & Summer School on "Models of Life"
    • Place of Presentation
      Krogerup hojskole(デンマーク)
    • Year and Date
      2015-08-04
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 適応進化ダイナミクスの解明:微生物実験と理論解析2015

    • Author(s)
      古澤力
    • Organizer
      東大理学部物理学科 懇話会
    • Place of Presentation
      東京大学本郷キャンパス
    • Year and Date
      2015-07-17
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Origin of heredity by spontaneous symmetry breaking: Evolutionary consequences of complementary replication in a minimum model of protocells2015

    • Author(s)
      Nobuto Takeuchi
    • Organizer
      the Annual Meeting of the Society for Molecular Biology and Evolution
    • Place of Presentation
      Hofburg Palace(ウィーン、オーストリア)
    • Year and Date
      2015-07-12
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ゲノム解析の先に見えるもの:大腸菌進化実験の表現型・遺伝子型解析2015

    • Author(s)
      古澤力
    • Organizer
      第4回NGS現場の会
    • Place of Presentation
      筑波国際会議場
    • Year and Date
      2015-07-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 進化ダイナミクスの構成的理解~大腸菌進化実験から何が見えるか?~2015

    • Author(s)
      古澤力
    • Organizer
      第8回Evo-devo青年の会
    • Place of Presentation
      名古屋大学理学南館
    • Year and Date
      2015-06-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 大腸菌進化過程の表現型・遺伝子型解析:抗生物質耐性菌の出現抑制へ向けて2015

    • Author(s)
      古澤力
    • Organizer
      アジレントゲノミクスフォーラム
    • Place of Presentation
      浅草橋ヒューリックホール
    • Year and Date
      2015-06-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Book] 普遍生物学2019

    • Author(s)
      金子 邦彦
    • Total Pages
      322
    • Publisher
      東京大学出版会
    • ISBN
      4130626205
    • Related Report
      2019 Annual Research Report
  • [Book] 進化実験の定量生物学(定量生物学(小林徹也 編))2018

    • Author(s)
      古澤力
    • Total Pages
      290
    • Publisher
      化学同人
    • ISBN
      9784759817300
    • Related Report
      2018 Annual Research Report
  • [Book] ラボ内での全自動進化実験システムの構築(実験医学別冊「あなたのラボにAI×ロボットがやってくる(夏目徹 編)」)2017

    • Author(s)
      古澤力, 前田智也, 堀之内貴明
    • Total Pages
      144
    • Publisher
      羊土社
    • Related Report
      2017 Annual Research Report
  • [Book] 進化学に残された謎:複数の形質が絡み合う進化プロセスはどのようにして可能か?(「進化の謎をゲノムで解く」(長谷部光泰監修))2015

    • Author(s)
      古澤力
    • Total Pages
      198
    • Publisher
      学研メディカル秀潤社
    • Related Report
      2015 Annual Research Report
  • [Patent(Industrial Property Rights)] TRANSCRIPTOME ESTIMATION DEVICE AND TRANSCRIPTOME ESTIMATION METHOD2019

    • Inventor(s)
      Wakamoto, Y., Kobayashi, K.
    • Industrial Property Rights Holder
      東京大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2019
    • Acquisition Date
      2019
    • Related Report
      2019 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] トランスクリプトーム推定装置およびトランスクリプトーム推定方法2017

    • Inventor(s)
      若本祐一、小林鉱石
    • Industrial Property Rights Holder
      国立大学法人東京大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-234164
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report

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Published: 2015-06-03   Modified: 2023-10-16  

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