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Induction of -1 ribosomal frameshifting by a small molecule and its application to protein transport and localization

Research Project

Project/Area Number 15K01820
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Chemical biology
Research InstitutionOsaka University

Principal Investigator

Murata Asako  大阪大学, 産業科学研究所, 助教 (50557121)

Project Period (FY) 2015-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
KeywordsRNA高次構造 / 合成小分子 / -1リボソーマルフレームシフト / 翻訳制御 / バイオテクノロジー / 小分子化合物 / 翻訳-1フレームシフト / 翻訳-1フレームシフト / 翻訳–1フレームシフト
Outline of Final Research Achievements

This research aims to develop a tool to control protein transport and localization by utilizing the ligand-inducible -1 ribosomal frameshifting (-1PRF). -1PRF is a recoding mechanism to make alternative proteins from a single mRNA transcript. -1PRF is stimulated by cis-acting signals in mRNA, a slippery sequence and a downstream pseudoknot. In this study we engineered the frameshifting pseudoknot to respond to our designed small molecule naphthyridine carbamate tetramer (NCTn). We demonstrate that NCTn can stabilize the pseudoknot structure in mRNA and activate -1PRF, thereby induce synthesis of a protein from an alternative reading frame in cells. The ligand-inducible -1PRF system developed in this study provides a new tool for de novo production of a fusion protein by small synthetic molecules, and therefore can be applied to cellular transport and localization of target proteins in cells.

Academic Significance and Societal Importance of the Research Achievements

タンパク質の輸送や局在を規定するシグナルペプチドは,任意のタンパク質を特定の細胞小器官へ局在させることに利用されている。シグナルペプチドの付加は,タンパク質の遺伝子配列にシグナルペプチドをコードする塩基配列を付加する,という遺伝子工学の手法により行われる。そのため,発現後のタンパク質へのシグナルペプチドの付加もしくは除去は,既存の遺伝子工学手法では実現出来ない。本研究は,合成小分子で誘導される-1フレームシフトを利用することで,標的タンパク質に翻訳の段階でシグナルペプチドを付加する方法を提供する。

Report

(5 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (15 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (4 results) Journal Article (5 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 5 results,  Open Access: 1 results) Presentation (6 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results)

  • [Int'l Joint Research] Department of Physical Biochemistry/Max Planck Institute/for Biophysical Chemistry(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Department of Physical Biochemistry,/Max Planck Institute/for Biophysical Chemistry(Germany)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] Max Planck Institute(Germany)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Max Planck Institute(Germany)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting2018

    • Author(s)
      Matsumoto Saki、Caliskan Neva、Rodnina Marina V、Murata Asako、Nakatani Kazuhiko
    • Journal Title

      Nucleic Acids Research

      Volume: 46 Issue: 16 Pages: 8079-8089

    • DOI

      10.1093/nar/gky689

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Synthetic ligand promotes gene expression by affecting GC sequence in promoter2017

    • Author(s)
      Matsumoto Saki、Iida Kei、Murata Asako、Denawa Masatsugu、Hagiwara Masatoshi、Nakatani Kazuhiko
    • Journal Title

      Bioorganic & medicinal chemistry letters

      Volume: 27 Issue: 15 Pages: 3391-3394

    • DOI

      10.1016/j.bmcl.2017.06.006

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Naphthyridine-Benzoazaquinolone : Evaluation of tricyclic system for the binding to (CAG)n Repeat DNA and RNA2016

    • Author(s)
      Fukuzumi, T. ; Murata, A. ; Aikawa, H. ; Harada, Y. ; Nakatani, K.
    • Journal Title

      Chem. Asian. J.

      Volume: 21 Issue: 13 Pages: 1971-1981

    • DOI

      10.1002/asia.201600527

    • Description
      in press
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Ligand that Targets CUG Trinucleotide Repeats2016

    • Author(s)
      Li. J.; Matsumoto, J.; Bai, L.-P.; Murata, A.; Dohno, A.; Nakatani, K.
    • Journal Title

      Chem. Eur. J.

      Volume: 22 Issue: 42 Pages: 14881-14889

    • DOI

      10.1002/chem.201602741

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Exploratory Study on the RNA-Binding Structural Motifs by Library Screening Targeting pre-miRNA-29a.2015

    • Author(s)
      Fukuzumi, T.; Murata, A.; Aikawa, H.; Harada, Y.: Nakatani, K.
    • Journal Title

      Chem. Eur. J.

      Volume: 21 Issue: 47 Pages: 16859-16867

    • DOI

      10.1002/chem.201502913

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Presentation] Synthetic small molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting2018

    • Author(s)
      Asako Murata, Saki Matsumoto, Neva Caliskan, Marina V. Rodnina, Kazuhiko Nakatani
    • Organizer
      International Symposium on Nucleic Acids Chemistry (ISNAC) 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ligand-inducible –1 ribosomal frameshifting in the cells2016

    • Author(s)
      松本 咲・村田 亜沙子・中谷 和彦
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] 小分子による-1リボソーマルフレームシフト誘起とタンパク質の輸送・局在制御への応用2015

    • Author(s)
      村田 亜沙子・松本 咲・洪 昌峰・中谷 和彦
    • Organizer
      第38回分子生物学会年会 第88回日本生化学会 合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 小分子誘起型-1リボソームフレームシフトによる遺伝子発現制御システムの開発2015

    • Author(s)
      松本咲・村田亜沙子・中谷和彦
    • Organizer
      細胞をつくる会
    • Place of Presentation
      大阪
    • Year and Date
      2015-11-12
    • Related Report
      2015 Research-status Report
  • [Presentation] Regulation of gene expression by ligand-inducible -1 ribosomal frameshifting2015

    • Author(s)
      Saki Matsumoto, Asako Murata, Changfeng Hong, Kazuhiko Nakatani
    • Organizer
      ECBS & ICBS joint meeting 2015
    • Place of Presentation
      Berlin, Germany
    • Year and Date
      2015-10-07
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Regulation of gene expression by ligand-inducible -1 ribosomal frameshifting2015

    • Author(s)
      Saki Matsumoto, Asako Murata, Changfeng Hong, Kazuhiko Nakatani
    • Organizer
      RNA2015, The 20th Annual Meeting of the RNA Society
    • Place of Presentation
      Wisconsin, USA
    • Year and Date
      2015-05-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2020-03-30  

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