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Rational design of organocatalysts with a DFT-based conformational search

Research Project

Project/Area Number 15K05431
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Organic chemistry
Research InstitutionFukuoka Institute of Technology (2017)
Kyushu University (2015-2016)

Principal Investigator

Kamachi Takashi  福岡工業大学, 工学部, 准教授 (40403951)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords有機分子触媒 / 配座解析 / 密度汎関数法 / 遷移状態
Outline of Final Research Achievements

Asymmetric organocatalysis is one of the most useful methods for a wide variety of enantioselective transformation because of operational simplicity, mild reaction conditions, and the environmentally benign nature of the reaction.1-3 Unlike traditional metal-based catalysts with well-defined metal-ligand coordination, non-covalent interactions, such as hydrogen-bonding interactions, van der Waals interactions, and electrostatic interactions, play a central role in controlling the stereochemical outcome of the organocatalysts. A conformational search program for finding low-energy conformations of large noncovalent complexes has been developed. Quantitatively reliable semiempirical quantum mechanical PM6-DH+ method, which is able to accurately describe noncovalent interactions at a low computational cost, was employed in contrast to conventional conformational search programs in which molecular mechanical methods are usually adopted.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (27 results)

All 2018 2017 2016 2015

All Journal Article (15 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 15 results,  Acknowledgement Compliant: 5 results,  Open Access: 6 results) Presentation (12 results) (of which Int'l Joint Research: 6 results,  Invited: 5 results)

  • [Journal Article] Combined theoretical and experimental study on alcoholysis of amides on CeO 2 surface: A catalytic interplay between Lewis acid and base sites2018

    • Author(s)
      Kamachi Takashi、Siddiki S.M.A. Hakim、Morita Yoshitsugu、Rashed Md. Nurnobi、Kon Kenichi、Toyao Takashi、Shimizu Ken-ichi、Yoshizawa Kazunari
    • Journal Title

      Catalysis Today

      Volume: 303 Pages: 256-262

    • DOI

      10.1016/j.cattod.2017.09.006

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Catalyst Informatics on Methane Activation on Various Metal Alloys2017

    • Author(s)
      蒲池 高志、斎藤 雅史、辻 雄太、吉澤 一成
    • Journal Title

      Journal of Computer Chemistry, Japan

      Volume: 16 Issue: 5 Pages: 147-148

    • DOI

      10.2477/jccj.2017-0058

    • NAID

      130006397395

    • ISSN
      1347-1767, 1347-3824
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Superior Thermoelasticity and Shape-Memory Nanopores in a Porous Supramolecular Organic Framework2016

    • Author(s)
      Y.-G. Huang, Y. Shiota, M.-Y. Wu, S.-Q. Su, Z.-S. Yao, S. Kang, S. Kanegawa, G.-L. Li, S.-Q. Wu, T. Kamachi, K. Yoshizawa, M.-C. Hong, and Osamu Sato
    • Journal Title

      Nature Commun.

      Volume: 7 Issue: 1 Pages: 11564-11571

    • DOI

      10.1038/ncomms11564

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Computational Mutation Study on the Role of Catalytic Residues in Coenzyme B12-Dependent Diol Dehydratase2016

    • Author(s)
      K. Doitomi, T. Kamachi, T. Toraya, and K. Yoshizawa
    • Journal Title

      Bull. Chem. Soc. Jpn.

      Volume: 89 Issue: 8 Pages: 955-964

    • DOI

      10.1246/bcsj.20160083

    • NAID

      130006770684

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Thermally Induced Intra-Carboxyl Proton Shuttle in a Molecular Rack-and-Pinion Cascade Achieving Macroscopic Crystal Deformation2016

    • Author(s)
      You-Gui Huang, Yoshihito Shiota, Sheng-Qun Su, Shu-Qi Wu, Zi-Shuo Yao, Guo-Ling Li, Shinji Kanegawa, Soonchul Kang, Takashi Kamachi, Kazunari Yoshizawa, Katsuhiko Ariga, Osamu Sato
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 55 Issue: 47 Pages: 14628-14632

    • DOI

      10.1002/anie.201607886

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] DFT Study on the pH Dependence of the Reactivity of Ferrate(VI)2016

    • Author(s)
      T. Kamachi, M. Miyanishi, K. Yoshizawa
    • Journal Title

      ACS Symposium Series

      Volume: 1238 Pages: 473-487

    • DOI

      10.1021/bk-2016-1238.ch018

    • ISBN
      9780841231870, 9780841231863
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Synthesis and Structure of a Water-soluble μ-η1:η1-N2 Dinuclear RuII Complex with a Polyamine Ligand2016

    • Author(s)
      K. Yoshimoto, T. Yatabe, T. Matsumoto, A. Robertson, H. Nakai, H. Tanaka, T. Kamachi, Y. Shiota, K. Yoshizawa, K. Asazawa, H. Tanaka, Seiji Ogo
    • Journal Title

      Chemistry Letters

      Volume: 45 Issue: 2 Pages: 149-151

    • DOI

      10.1246/cl.151004

    • NAID

      130005124715

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Intraprotein transmethylation via a CH3–Co(III) species in myoglobin reconstituted with a cobalt corrinoid complex2016

    • Author(s)
      Y. Morita, K. Oohora, A. Sawada, K. Doitomi, J. Ohbayashi, T. Kamachi, K. Yoshizawa, Y. Hisaeda, T. Hayashi
    • Journal Title

      Dalton Transactions

      Volume: 45 Issue: 8 Pages: 3277-3284

    • DOI

      10.1039/c5dt04109k

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal Structures and Coordination Behavior of Aqua- and Cyano-Co(III) Tetradehydrocorrins in the Heme Pocket of Myoglobin2016

    • Author(s)
      Y. Morita, K. Oohora, E. Mizohata, A. Sawada, T. Kamachi, K. Yoshizawa, T. Inoue, T. Hayashi
    • Journal Title

      Inorganic Chemistry

      Volume: 55 Issue: 3 Pages: 1287-1295

    • DOI

      10.1021/acs.inorgchem.5b02598

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Low-Mode Conformational Search Method with Semiempirical Quantum Mechanical Calculations: Application to Enantioselective Organocatalysis2016

    • Author(s)
      T. Kamachi, K. Yoshizawa
    • Journal Title

      Journal of Chemical Information and Modeling

      Volume: 56 Issue: 2 Pages: 347-353

    • DOI

      10.1021/acs.jcim.5b00671

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Possible Peroxo State of the Dicopper Site of Particulate Methane Monooxygenase from Combined Quantum Mechanics and Molecular Mechanics Calculations2016

    • Author(s)
      S. Itoyama, K. Doitomi, T. Kamachi, Y. Shiota, K. Yoshizawa
    • Journal Title

      Inorganic Chemistry

      Volume: 55 Issue: 6 Pages: 2771-2775

    • DOI

      10.1021/acs.inorgchem.5b02603

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Selective carbon dioxide adsorption of ε-Keggin-type zincomolybdate-based purely-inorganic 3D frameworks2015

    • Author(s)
      Zhenxin Zhang, Masahiro Sadakane, Shin-ichiro Noro, Toru Murayama, Takashi Kamachi, Kazunari Yoshizawa, and Wataru Ueda
    • Journal Title

      Journal of Materials Chemistry A

      Volume: 3 Issue: 2 Pages: 746-755

    • DOI

      10.1039/c4ta05496b

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Computational Exploration of the Mechanism of the Hydrogenation Step of the Anthraquinone Process for Hydrogen peroxide Production2015

    • Author(s)
      T. Kamachi, T. Ogata, E. Mori, K. Iura, N. Okuda, M. Nagata, K. Yoshizawa
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 119 Issue: 16 Pages: 8748-8754

    • DOI

      10.1021/acs.jpcc.5b01325

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Formation and nitrile hydrogenation performance of Ru nanoparticles on a K-doped Al2O3 surface2015

    • Author(s)
      S. Muratsugu, S. Kityakarn, F. Wang, N. Ishiguro, T. Kamachi, K. Yoshizawa, O. Sekizawa, T. Uruga, M. Tada
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 17 Issue: 38 Pages: 24791-24802

    • DOI

      10.1039/c5cp03456f

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Assembling an alkyl rotor to access abrupt and reversible crystalline deformation of a cobalt(II) complex2015

    • Author(s)
      S.-Q. Su, T. Kamachi, Z.-S. Yao, Y.-G. Huang, Y. Shiota, K. Yoshizawa, N. Azuma, Y. Miyazaki, M. Nakano, G. Maruta, S. Takeda, S. Kang, S. Kanegawa, O. Sato
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 8810-8810

    • DOI

      10.1038/ncomms9810

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Conformational Analysis of Enantioselective Mukaiyama-Mannich Reaction by Cyclopentadiene-Based Bronsted Acid2018

    • Author(s)
      Takashi Kamachi, Masashi Saito, Kazunari Yoshizawa
    • Organizer
      International Congress on Pure & Applied Chemistry 2018 (ICPAC2018)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] CeO2触媒によるアミドのエステル化に関する理論的研究2017

    • Author(s)
      蒲池高志、森田能次、今健一、鳥屋尾隆、清水研一、吉澤一成
    • Organizer
      日本化学会第97春季年会
    • Place of Presentation
      東京 慶應義塾大学 日吉キャンパス
    • Year and Date
      2017-03-16
    • Related Report
      2016 Research-status Report
  • [Presentation] Low-Mode Conformational Search Method with Semi-empirical Quantum Mechanical Calculations: Application to Enantioselective Organocatalysis2017

    • Author(s)
      Takashi Kamachi, Kazunari Yoshizawa
    • Organizer
      International Symposium on Pure & Applied Chemistry 2017 (ISPAC2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] メタン活性化を目指したインフォマティクス2017

    • Author(s)
      蒲池高志、辻雄太、吉澤一成
    • Organizer
      日本コンピュータ化学会2017秋季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Low-Mode Conformational Search Method with Semi-empirical Quantum Mechanical Calculations: Application to Enantioselective Organocatalysis2016

    • Author(s)
      Takashi Kamachi, Kazunari Yoshizawa
    • Organizer
      Japan-France-Spain Joint-Symposium on Theoretical and Computational Science of Complex Systems
    • Place of Presentation
      京都 福井謙一記念研究センター
    • Year and Date
      2016-10-26
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 半経験的分子軌道法に基づく配座解析プログラムConFinderの開発と有機分子触媒反応への応用2016

    • Author(s)
      蒲池高志、吉澤一成
    • Organizer
      分子科学討論会2016
    • Place of Presentation
      神戸 神戸ファッションマート
    • Year and Date
      2016-09-13
    • Related Report
      2016 Research-status Report
  • [Presentation] 半経験的分子軌道法に基づく配座解析プログラムの開発と有機分子触媒反応への応用2016

    • Author(s)
      蒲池高志
    • Organizer
      九重分子科学セミナー2016
    • Place of Presentation
      大分 国立大学九重共同研修所
    • Year and Date
      2016-09-02
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Low-Mode Conformational Search Method with Semiempirical Quantum Mechanical Calculations: Application to Enantioselective Organocatalysis2016

    • Author(s)
      Takashi Kamachi, Kazunari Yoshizawa
    • Organizer
      6th French-Japanese Workshop on Computational Methods in Chemistry
    • Place of Presentation
      京都
    • Year and Date
      2016-03-01
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 半経験的分子軌道法に基づく配座解析プログラムの開発と有機分子触媒反応への応用2016

    • Author(s)
      蒲池高志、吉澤一成
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都
    • Year and Date
      2016-03-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Theoretical study on enantioselective alkylation by binaphthyl chiral phase-transfer catalysts: A DFT-based conformational analysis2015

    • Author(s)
      Takashi Kamachi, Kazunari Yoshizawa
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      ハワイ
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 密度汎関数法による固体表面の触媒機能解析2015

    • Author(s)
      蒲池高志
    • Organizer
      触媒学会西日本支部 触媒技術セミナー(2)
    • Place of Presentation
      福岡
    • Year and Date
      2015-10-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Enantioselective Alkylation by Binaphthyl Chiral Phase-Transfer Catalysis: A DFT-Based Conformational Analysis2015

    • Author(s)
      T. Kamachi, K. Yoshizawa
    • Organizer
      International Congress of Quantum Chemistry 15 th
    • Place of Presentation
      北京
    • Year and Date
      2015-06-01
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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