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Development of photoaffinity selection system for identification of low abundance proteins

Research Project

Project/Area Number 15K05559
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

Kaori Sakurai  東京農工大学, 工学(系)研究科(研究院), 准教授 (50447512)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Keywordsフォトアフィニティープローブ / 生物活性分子 / 結合タンパク質 / 金ナノ粒子 / 結合タンパク質探索法 / 標的タンパク質 / 光反応基 / フォトアフィニティーラベリング / フォトアフィニティラベリング / アフィニティー精製
Outline of Final Research Achievements

Development of efficient target identification methods is important for accelerating the discovery of new biological pathways and drug targets. We have designed and synthesized gold-nanoparticle based affinity labeling probes, which display bioactive ligands and photoreactive groups for catch and release of binding proteins in one-pot. Gold nanoparticles are suitable as probe scaffolds due to its capability to covalently immobilize organic compounds in a multivalent fashion, the water dispersibility and the high density, which enable facie centrifugal separation. We demonstrated that our gold-nanoparticle probes can crosslink the binding proteins of high μM affinity with high selectivity at nM probe concentration.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (10 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (3 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Invited: 3 results) Remarks (1 results)

  • [Int'l Joint Research] カロリンスカ研究所(スウェーデン)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Synthesis of alkyne-tagged and biotin-tagged Sortin1 as novel photoaffinity probes2018

    • Author(s)
      Komatsu, R. Yamaguchi, T. Kobayashi, N. Ozeki, Y. Sakurai, K.
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 28 Issue: 9 Pages: 1562-1565

    • DOI

      10.1016/j.bmcl.2018.03.060

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis of a fluorescent photoaffinity probe of OSW-1 by site-selective acylation of an inactive congener and biological evaluation2017

    • Author(s)
      Sakurai, K., Hiraizumi, M., Isogai, N., Komatsu, R., Shibata, T., Ohta, Y.
    • Journal Title

      Chemical Communications

      Volume: 53 Issue: 20 Pages: 517-520

    • DOI

      10.1016/j.bmcl.2016.08.053

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gold Nanoparticle-Based Multivalent Carbohydrate Probes: Selective Photoaffinity Labeling of Carbohydrate-Binding Proteins2016

    • Author(s)
      Sakurai, K., Hatai, Y., Okada, A.
    • Journal Title

      Chem. Sci.

      Volume: 7 Issue: 1 Pages: 702-706

    • DOI

      10.1039/c5sc03275j

    • Related Report
      2016 Research-status Report 2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 生物活性分子の作用機構解明に向けた標的タンパク質探索法2018

    • Author(s)
      櫻井香里
    • Organizer
      Asian Chemical Probe Research Hub Symposium天然物有機化学・天然物合成とケミカルバイオロジー
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 生物活性分子の作用機構解明に向けた標的タンパク質探索法2018

    • Author(s)
      櫻井香里
    • Organizer
      日本化学会 第98春季年会 女性科学者が拓く生命化学 特別企画公演
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 生物活性分子の作用機序解明に向けた標的タンパク質探索法の開発2017

    • Author(s)
      櫻井香里
    • Organizer
      新規素材探索研究会第16回セミナー
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Development of gold nanoparticle-based photoaffinity probes displaying bioactive small-molecule ligands2017

    • Author(s)
      Amane Kato, Keisuke Adachi, Yuki Hatai, Kaori Sakurai,
    • Organizer
      第97回日本化学会春季年会
    • Place of Presentation
      慶應大学日吉キャンパス(神奈川県横浜市)
    • Related Report
      2016 Research-status Report
  • [Presentation] Development of gold nanoparticle-based multivalent carbohydrate probes for selective photoaffinity labeling and enrichment of carbohydrate-binding proteins2015

    • Author(s)
      Yuki Hatai
    • Organizer
      第34回日本糖質学会年会
    • Place of Presentation
      東京大学安田講堂(東京都文京区)
    • Year and Date
      2015-08-02
    • Related Report
      2015 Research-status Report
  • [Remarks]

    • URL

      http://web.tuat.ac.jp/~sakurai/

    • Related Report
      2017 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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