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Elucidating electron transfer mechanism of new [NiFe]hydrogenase surpassing platinum catalyst

Research Project

Project/Area Number 15K05566
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionKyushu University

Principal Investigator

Ki-Seok Yoon  九州大学, カーボンニュートラル・エネルギー国際研究所, 准教授 (50701497)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords水素酸化反応 / ヒドロゲナーゼ / 酸素耐性酵素 / 燃料電池 / 電子伝達系 / ゲノム解析 / タンパク質結晶解析 / 生化学的な特性解析 / 水素酸化活性 / 酸素安定性 / 生化学的な特性 / 電子伝達 / タンパク質結晶構造解析 / 水素燃料電池
Outline of Final Research Achievements

[NiFe]hydrogenases catalyze the reversible reaction of the cleavage and production of H2, harboring a NiFe center for H2 activation in a large subunit and iron-sulfur clusters for electron transfer in a small subunit. The H2-catalyzing biocatalysts have received much attention due to their potential applications in H2-based fuel cell technology. However, most hydrogenases are highly sensitive to O2, leading to inactivation of catalytic activity after oxidative stress. We recently found the new O2-tolerant [NiFe]hydrogenases from our isolated enterobacterium Citrobacter sp. S-77. The newly found [NiFe]hydrogenase displays an excellent performance for catalytic H2-activation as an O2-tolerant catalyst.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (21 results)

All 2018 2017 2016 2015

All Journal Article (13 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 13 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (8 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Journal Article] A MnI Model for the Photoinhibited Species of Oxygen-Evolving Complex.2018

    • Author(s)
      Yatabe, Takeshi; Tokunaga, Taisuke; Matsumoto, Kikkawa, Mitsuhiro; Tatsuya; Yoon, Ki-Seok; Ogo, Seiji.
    • Journal Title

      Chem. Lett.

      Volume: 47 Issue: 1 Pages: 34-36

    • DOI

      10.1246/cl.170869

    • NAID

      130006302110

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis of the redox switches in the NAD+-reducing soluble [NiFe]-hydrogenase2017

    • Author(s)
      Y. Shomura, M, Taketa, H. Nakashima, H. Tai, H. Nakagawa, Y. Ikeda, Y, M. Ishii, Y. Igarashi, H. Nishihara, K.-S. Yoon, S. Ogo, Y. Higuchi
    • Journal Title

      Science

      Volume: 537 Issue: 6354 Pages: 928-932

    • DOI

      10.1126/science.aan4497

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanistic Investigation of the Formation of H2 from HCOOH with a Dinuclear Ru Model Complex for Formate Hydrogen Lyase.2017

    • Author(s)
      Tokunaga, Taisuke; Yatabe, Takeshi; Matsumoto, Takahiro; Ando, Tatsuya; Yoon, Ki-Seok; Ogo, Seiji.
    • Journal Title

      Sci. Tech. Adv. Mater.

      Volume: 18 Issue: 1 Pages: 870-876

    • DOI

      10.1080/14686996.2017.1379857

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nitrogen Fixation Genes and Nitrogenase Activity of the Non-Heterocystous Cyanobacterium <i>Thermoleptolyngbya</i> sp. O-772017

    • Author(s)
      K.-S. Yoon, N.T. Nguyen, K.T. Tran, K. Tsuji, S. Ogo
    • Journal Title

      Microbes and Environments

      Volume: 32 Issue: 4 Pages: 324-329

    • DOI

      10.1264/jsme2.ME17015

    • NAID

      130006286273

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanistic Insight into Switching between H2- or O2-Activation by Simple Ligand Effects of [NiFe]hydrogenase Models.2017

    • Author(s)
      Matsumoto, Takahiro; Kishima, Takahiro; Yatabe, Takeshi; Yoon, Ki-Seok; Ogo, Seiji.
    • Journal Title

      Organometallics

      Volume: 36 Issue: 20 Pages: 3883-3890

    • DOI

      10.1021/acs.organomet.7b00471

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Fusion of Biomimetic Fuel and Solar Cells Based on Hydrogenase, Photosystem II, and Cytochrome c Oxidase.2017

    • Author(s)
      Kikkawa, Mitsuhiro; Yatabe, Takeshi; Matsumoto, Takahiro; Yoon, Ki-Seok; Suzuki, Kazuhau; Enomoto, Takao; Kaneko, Kenji; Ogo, Seiji.
    • Journal Title

      ChemCatChem

      Volume: 9 Issue: 21 Pages: 4024-4028

    • DOI

      10.1002/cctc.201700995

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] One Model, Two Enzymes: Activation of Hydrogen and Carbon Monoxide.2017

    • Author(s)
      Ogo, Seiji; Mori, Yuki; Ando, Tatsuya; Matsumoto, Takahiro; Yatabe, Takeshi; Yoon, Ki-Seok; Hayashi, Hideki; Asano, Masashi.
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 56 Issue: 33 Pages: 9723-9726

    • DOI

      10.1002/anie.201704864

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Acetyl-CoA Production by Encapsulated Pyruvate Ferredoxin Oxidoreductase in Alginate Hydrogels2017

    • Author(s)
      Takenaka, Makoto; Yoon, Ki-Seok; Matsumoto, Takahiro; Ogo, Seiji
    • Journal Title

      Bioresour. Technol.

      Volume: 227 Pages: 279-285

    • DOI

      10.1016/j.biortech.2016.12.051

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structure and Reactivity of a Ru-based Peroxide Complex as a Reactive Intermediate of O2-Promoted Activation of a C-H Bond in a Cp* Ligand.2017

    • Author(s)
      Yatabe, Takeshi; Kishima, Takahiro; Nagano, Hideaki; Matsumoto, Takahiro; Yamasaki, Mikio; Yoon, Ki-Seok; Ogo, Seiji
    • Journal Title

      Chemistry Letters

      Volume: 46 Issue: 1 Pages: 74-76

    • DOI

      10.1246/cl.160909

    • NAID

      130005308316

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Improved purification, crystallization and crystallographic study of Hyd-2 type [NiFe] hydrogenase from Citrobacter sp. S-772016

    • Author(s)
      Muhd Noor, N.D.; Nishikawa, Koji; Nishihara, Hirofumi; Yoon, Ki-Seok; Ogo, Seiji; Higuchi, Yoshiki
    • Journal Title

      Acta Crystallogr. Sect. F Struct. Biol. Commun.

      Volume: F72 Issue: 1 Pages: 53-58

    • DOI

      10.1107/s2053230x15024152

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Biochemical Characterization of a Bifunctional Acetaldehyde-Alcohol Dehydrogenase Purified from a Facultative Anaerobic Bacterium Citrobacter sp. S-772016

    • Author(s)
      Tsuji, Kohsei; Yoon, Ki-Seok; Ogo, Seiji
    • Journal Title

      J. Biosci. Bioeng.

      Volume: 121 Issue: 3 Pages: 253-258

    • DOI

      10.1016/j.jbiosc.2015.06.019

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural Differences of Oxidized Iron-Sulfur and Nickel-Iron Cofactors in O2-Tolerant and O2-Sensitive Hydrogenases Studied by X-ray Absorption Spectroscopy2015

    • Author(s)
      Sigfridsson, Kajsa G. V.; Leidel, Nils; Sanganas, Oliver; Chernev, Petko; Lenz, Oliver; Yoon, Ki-Seok; Nishihara, Hirofumi; Parkin, Alison; Armstrong, Fraser A.; Dementin, S&#233;bastien; Rousset, Marc; L. De Lacey, Antonio; Haumann, Michael
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1847 Issue: 2 Pages: 162-170

    • DOI

      10.1016/j.bbabio.2014.06.011

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Crystallization and preliminary X-ray analysis of the NAD+-reducing [NiFe] hydrogenase from Hydrogenophilus thermoluteolus TH-1.2015

    • Author(s)
      Taketa M, Nakagawa H, Habukawa M, Osuka H, Kihira K, Komori H, Shibata N, Ishii M, Igarashi Y, Nishihara H, Yoon KS, Ogo S, Shomura Y, Higuchi Y.
    • Journal Title

      Acta Crystallogr F Struct Biol Commun.

      Volume: 71 Issue: 1 Pages: 96-99

    • DOI

      10.1107/s2053230x14026521

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Presentation] New insights of naturally occurring O2-tolerant [NiFe]hydrogenase2018

    • Author(s)
      Ki-Seok Yoon
    • Organizer
      International Congress on Pure & Applied Chemistry (ICPAC) 2018
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] グリセルアルデヒド-3-リン酸脱水素酵素の補酵素AによるS-チオール化2017

    • Author(s)
      辻 幸盛、尹 基石、小江 誠司
    • Organizer
      2017年度生命科学系学会合同年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 固定化ピルビン酸-フェレドキシン酸化還元酵素によるアセチル-CoA生成2017

    • Author(s)
      竹中 慎, 尹 基石, 松本 崇弘, 小江 誠司
    • Organizer
      第69回日本生物工学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Biochemical characterization of Acetaldehyde-alcohol dehydrogenase from Citrobacter sp. S-772016

    • Author(s)
      Kohsei Tsuji, Ki-Seok Yoon, Seiji Ogo
    • Organizer
      6th CSJ Chemistry Festa
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2016-11-14
    • Related Report
      2016 Research-status Report
  • [Presentation] iochemical and phylogenetic studies of Hyd-2 type O2-tolerant [NiFe]hydrogenase2016

    • Author(s)
      Ki-Seok Yoon
    • Organizer
      Gordon Research Conference: Metallocofactors
    • Place of Presentation
      Stonehill College in Easton, MA, United States
    • Year and Date
      2016-06-12
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 新規ヒドロゲナーゼの特性と燃料電池用触媒への応用2015

    • Author(s)
      尹基石
    • Organizer
      微生物学の新たな発展、ゲノムから機能・実用に関する九州シンポジウム
    • Place of Presentation
      ANAホリデイ・イン リゾート 宮崎、宮﨑
    • Year and Date
      2015-12-05
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Citrobacter sp. S-77由来のアセトアルデヒド-アルコール脱水素酵素の精製と生化学的特性評価2015

    • Author(s)
      辻 幸盛、 尹 基石、 小江 誠司
    • Organizer
      微生物学の新たな発展、ゲノムから機能・実用に関する九州シンポジウム
    • Place of Presentation
      ANAホリデイ・イン リゾート 宮崎、宮﨑
    • Year and Date
      2015-12-05
    • Related Report
      2015 Research-status Report
  • [Presentation] Insight into phylogenetic diversity of O2-tolerant [NiFe]hydrogenase2015

    • Author(s)
      尹基石
    • Organizer
      Gordon Research Conference: Enzyme, Coenzyme & Metabolic Pathways
    • Place of Presentation
      Waterville Valley, NH, United States
    • Year and Date
      2015-07-12
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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