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Regulation of DNA polymerase-catalyzed primer extension reaction based on formation of metal-mediated base pairs

Research Project

Project/Area Number 15K05574
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionOsaka University of Pharmaceutical Sciences

Principal Investigator

Urata Hidehito  大阪薬科大学, 薬学部, 教授(移行) (80211085)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords金属錯体型塩基対 / DNAポリメラーゼ / プライマー伸長反応 / 銀(I)イオン / 水銀(II)イオン / Ag(I)イオン / Hg(II)イオン / 5位修飾ピリミジン塩基
Outline of Final Research Achievements

In this project, we studied the selectivity for the formation of metal-mediated T-Ag(I)-C and T-Hg(II)-T base pairs in DNA polymerase-catalyzed primer extension reaction (PER) by using DNA templates containing the thymine analogs such as 5-fluorouracil (5FU) and 5-hydroxyuracil (OHU), etc. The results indicated that the acidity of NH at the N3 position of thymine is important for the formation of the T-Ag(I)-C base pair in PER and also the stability of DNA duplex containing the T-Ag(I)-C base pair, although the acidity hardly affected on the formation of the T-Hg(II)-T base pair in PER and the stability of DNA duplex containing the T-Hg(II)-T base pair.
Thus, selective regulation of the formation of the T-Ag(I)-C base pair in PER can be successfully achieved by changing the acidity of NH at the N3 position by modifying the 5-methyl group of thymine.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (6 results)

All 2017 2016 2015 Other

All Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Acknowledgement Compliant: 1 results) Presentation (3 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Structures, physicochemical properties, and applications of T-HgII-T, C-AgI-C, and other metallo-base-pairs.2015

    • Author(s)
      Yoshiyuki Tanaka, Jiro Kondo, Vladimir Sychrovsky, Jakub Sebera, Takenori Dairaku, Hisao Saneyoshi, Hidehito Urata, Hidetaka Torigoe and Akira Ono
    • Journal Title

      Chem. Commun.

      Volume: 51 Issue: 98 Pages: 17313-17360

    • DOI

      10.1039/c5cc02693h

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] DNA polymerase による金属錯体型塩基対の形成に対する pyrimidine 5 位修飾の影響2017

    • Author(s)
      吉村沙奈子、林淳祐、和田俊一、浦田秀仁
    • Organizer
      第67回 日本薬学会近畿支部総会・大会(兵庫医療大学)
    • Related Report
      2017 Annual Research Report
  • [Presentation] Influences of Zn(Ⅱ) and Mn(Ⅱ) ions on fidelity of DNA polymerases2016

    • Author(s)
      杉町莉世、田中菜摘、舩井達也、宮崎有紀、林淳祐、和田俊一、浦田秀仁
    • Organizer
      第43回国際核酸化学シンポジウム
    • Place of Presentation
      熊本
    • Year and Date
      2016-09-27
    • Related Report
      2016 Research-status Report
  • [Presentation] Cu(Ⅰ)の配位による新規C-Cu(Ⅰ)-T 型塩基対の形成2015

    • Author(s)
      中田 賢、舩井達也、宮崎有紀、林 淳祐、和田俊一、浦田秀仁
    • Organizer
      第65回日本薬学会近畿支部大会
    • Place of Presentation
      大阪大谷大学
    • Year and Date
      2015-10-17
    • Related Report
      2015 Research-status Report
  • [Book] 月刊「化学」2015

    • Author(s)
      舩井達也、浦田秀仁
    • Total Pages
      2
    • Publisher
      化学同人
    • Related Report
      2015 Research-status Report
  • [Remarks] 研究室一覧 機能分子創製化学研究室

    • URL

      https://www.oups.ac.jp/kenkyu/kenkyuushitu/sousei.html

    • Related Report
      2017 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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